Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8068J22.3 |
| Conread position: | 167-380 |
| Cow position: | chr14:17780311-17780089 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 178-399 |
| Cow position: | chr14:1832967-1833200 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 182-429 |
| Cow position: | chr14:38892006-38892268 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 51, 225 |
| Conread position: | 182-432 |
| Cow position: | chr14:22312971-22313228 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 123, 218 |
| Conread position: | 184-560 |
| Cow position: | chr14:3113905-3113549 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 152, 82 |
| Conread position: | 184-611 |
| Cow position: | chr14:45385585-45385982 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 105, 69 |
| Conread position: | 185-375 |
| Cow position: | chr14:25704496-25704294 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 185-622 |
| Cow position: | chr14:5404200-5404639 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 174 |
| Conread position: | 187-433 |
| Cow position: | chr14:6909325-6909587 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 188-359 |
| Cow position: | chr14:4337762-4337937 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 83, 38 |
| Conread position: | 188-430 |
| Cow position: | chr14:38062604-38062853 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 101, 87 |
| Conread position: | 189-623 |
| Cow position: | chr14:11491807-11491384 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 309 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 190-407 |
| Cow position: | chr14:12784835-12785059 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 77, 133 |
| Conread position: | 190-430 |
| Cow position: | chr14:38067068-38066823 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 109, 57 |
| Conread position: | 190-618 |
| Cow position: | chr14:30502185-30502609 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 243 |
| Conread position: | 191-415 |
| Cow position: | chr14:32755044-32754815 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 79, 48 |
| Conread position: | 192-335 |
| Cow position: | chr14:37013897-37014047 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 192-395 |
| Cow position: | chr14:34216199-34216414 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 192-431 |
| Cow position: | chr14:22239443-22239698 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 104, 71 |
| Conread position: | 192-431 |
| Cow position: | chr14:35364874-35365127 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 17, 192 |
| Conread position: | 192-431 |
| Cow position: | chr14:41317792-41318035 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 35, 122 |
| Conread position: | 192-618 |
| Cow position: | chr14:35032683-35033120 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 262 |
| Conread position: | 192-619 |
| Cow position: | chr14:4527637-4527206 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 75 |
| Conread position: | 192-622 |
| Cow position: | chr14:35271279-35270855 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 42 |
| Conread position: | 192-623 |
| Cow position: | chr14:35423804-35424254 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 129 |
| Conread position: | 193-407 |
| Cow position: | chr14:37201613-37201389 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 74, 21 |
| Conread position: | 193-618 |
| Cow position: | chr14:48215632-48216065 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 212 |
| Conread position: | 194-619 |
| Cow position: | chr14:11562717-11562289 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 65 |
| Conread position: | 195-617 |
| Cow position: | chr14:13589525-13589120 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 106, 67 |
| Conread position: | 205-426 |
| Cow position: | chr14:15881260-15881500 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 60, 201 |
| Conread position: | 210-623 |
| Cow position: | chr14:39303019-39302603 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 17 |
| Conread position: | 219-617 |
| Cow position: | chr14:40429051-40429455 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 53, 178 |
| Conread position: | 225-618 |
| Cow position: | chr14:5411907-5412293 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 134 |
| Conread position: | 233-423 |
| Cow position: | chr14:33481209-33481404 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 103, 180 |
| Conread position: | 234-431 |
| Cow position: | chr14:41938087-41937897 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 33, 99 |
| Conread position: | 239-431 |
| Cow position: | chr14:45749176-45748979 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 277-623 |
| Cow position: | chr14:26590606-26590954 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 35 |
| Conread position: | 315-619 |
| Cow position: | chr14:7235965-7235647 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 352-619 |
| Cow position: | chr14:36792045-36792307 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 79 |
| Conread position: | 362-613 |
| Cow position: | chr14:3503521-3503249 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 21, 51 |
| Conread position: | 362-618 |
| Cow position: | chr14:39000091-38999836 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 98 |
| Conread position: | 362-619 |
| Cow position: | chr14:24686989-24686740 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 21, 49 |
| Conread position: | 363-618 |
| Cow position: | chr14:19005084-19005313 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 20, 49 |
| Conread position: | 369-620 |
| Cow position: | chr14:5265896-5266149 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 204 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 9, 57 |
| Conread position: | 373-618 |
| Cow position: | chr14:15668742-15668494 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 25, 185 |
| Conread position: | 381-613 |
| Cow position: | chr14:31219253-31219487 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 392-613 |
| Cow position: | chr14:39501239-39501461 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 190 |
| Conread position: | 400-630 |
| Cow position: | chr14:49632458-49632218 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 35, 71 |
| Conread position: | 413-623 |
| Cow position: | chr14:31181891-31182102 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 67, 19 |
| Conread position: | 421-618 |
| Cow position: | chr14:45747080-45746888 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 427-617 |
| Cow position: | chr14:38894474-38894664 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 96, 83 |
| Conread position: | 430-618 |
| Cow position: | chr14:41723135-41722955 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 129, 27 |
| Conread position: | 430-619 |
| Cow position: | chr14:16334076-16333885 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 60, 180 |
| Conread position: | 430-619 |
| Cow position: | chr14:41320623-41320801 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 53, 83 |
| Conread position: | 430-623 |
| Cow position: | chr14:33481757-33481954 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 52, 116 |
| Conread position: | 430-682 |
| Cow position: | chr14:4237626-4237872 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 130, 49 |
| Conread position: | 431-576 |
| Cow position: | chr14:6870585-6870739 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 431-623 |
| Cow position: | chr14:48713523-48713716 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 49, 83 |
| Conread position: | 434-622 |
| Cow position: | chr14:20597491-20597682 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 153 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 49, 129 |
| Conread position: | 439-619 |
| Cow position: | chr14:13499026-13498847 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 445-689 |
| Cow position: | chr14:2850035-2849792 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 195, 19 |
| Conread position: | 450-621 |
| Cow position: | chr14:6703040-6702868 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 107 |
| Conread position: | 457-587 |
| Cow position: | chr14:17660516-17660387 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 26, 67 |
| Conread position: | 457-682 |
| Cow position: | chr14:38014210-38013988 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 33, 170 |
| Conread position: | 461-638 |
| Cow position: | chr14:29637033-29636864 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 103, 20 |
| Conread position: | 464-601 |
| Cow position: | chr14:32060923-32061062 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 496-623 |
| Cow position: | chr14:22239714-22239841 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 511-615 |
| Cow position: | chr14:42587925-42587823 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 516-625 |
| Cow position: | chr14:22119603-22119494 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 525-619 |
| Cow position: | chr14:25510383-25510476 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 81 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
Show alignments to all cow chromosomes.