Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8068J22.3 |
| Conread position: | 175-376 |
| Cow position: | chr15:18231386-18231169 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 95, 15 |
| Conread position: | 178-536 |
| Cow position: | chr15:47771327-47770965 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 158, 14 |
| Conread position: | 179-429 |
| Cow position: | chr15:31409105-31408848 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 180-620 |
| Cow position: | chr15:10829445-10829001 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 35 |
| Conread position: | 184-378 |
| Cow position: | chr15:34515324-34515117 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 184-412 |
| Cow position: | chr15:45712412-45712171 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 80, 34 |
| Conread position: | 186-431 |
| Cow position: | chr15:18043933-18044190 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 189-428 |
| Cow position: | chr15:21367582-21367822 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 84, 114 |
| Conread position: | 190-431 |
| Cow position: | chr15:35219925-35219675 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 81, 175 |
| Conread position: | 190-619 |
| Cow position: | chr15:42885986-42885587 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 61 |
| Conread position: | 191-406 |
| Cow position: | chr15:26444491-26444712 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 192-381 |
| Cow position: | chr15:34715374-34715573 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 192-402 |
| Cow position: | chr15:48870193-48870414 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 113, 206 |
| Conread position: | 192-409 |
| Cow position: | chr15:40347989-40347762 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 5, 171 |
| Conread position: | 192-430 |
| Cow position: | chr15:38540252-38540500 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 78, 89 |
| Conread position: | 192-431 |
| Cow position: | chr15:19782843-19783083 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 105, 181 |
| Conread position: | 192-624 |
| Cow position: | chr15:14373159-14373616 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 193-431 |
| Cow position: | chr15:27394935-27395179 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 79, 213 |
| Conread position: | 194-431 |
| Cow position: | chr15:547685-547438 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 70, 78 |
| Conread position: | 194-691 |
| Cow position: | chr15:9741250-9740753 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 64 |
| Conread position: | 203-620 |
| Cow position: | chr15:40300511-40300937 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 123 |
| Conread position: | 204-407 |
| Cow position: | chr15:36442629-36442430 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 12, 72 |
| Conread position: | 208-423 |
| Cow position: | chr15:11649968-11649738 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 63, 37 |
| Conread position: | 208-470 |
| Cow position: | chr15:36362930-36363193 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 91, 42 |
| Conread position: | 208-619 |
| Cow position: | chr15:47444085-47443682 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 51 |
| Conread position: | 208-637 |
| Cow position: | chr15:42479587-42479173 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 160 |
| Conread position: | 225-431 |
| Cow position: | chr15:33154636-33154426 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 74, 125 |
| Conread position: | 250-432 |
| Cow position: | chr15:18664985-18664791 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 277-618 |
| Cow position: | chr15:50202030-50202371 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 169 |
| Conread position: | 298-634 |
| Cow position: | chr15:23776720-23777072 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 116 |
| Conread position: | 338-611 |
| Cow position: | chr15:43623078-43623336 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 37, 19 |
| Conread position: | 346-617 |
| Cow position: | chr15:26066848-26066567 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 347-611 |
| Cow position: | chr15:1602784-1603025 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 15, 32 |
| Conread position: | 357-631 |
| Cow position: | chr15:28715759-28716024 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 362-619 |
| Cow position: | chr15:27872397-27872139 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 16, 42 |
| Conread position: | 430-576 |
| Cow position: | chr15:25014609-25014467 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 430-619 |
| Cow position: | chr15:19785480-19785675 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 52, 106 |
| Conread position: | 430-620 |
| Cow position: | chr15:11649179-11648988 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 154 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 61, 18 |
| Conread position: | 430-620 |
| Cow position: | chr15:31442655-31442469 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 60, 80 |
| Conread position: | 430-623 |
| Cow position: | chr15:38543755-38543952 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 158 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 430-658 |
| Cow position: | chr15:16625828-16625602 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 55, 133 |
| Conread position: | 430-685 |
| Cow position: | chr15:29603127-29603389 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 60, 101 |
| Conread position: | 434-619 |
| Cow position: | chr15:545575-545388 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 436-618 |
| Cow position: | chr15:46718502-46718685 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 103 |
| Conread position: | 436-690 |
| Cow position: | chr15:19151856-19151616 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 213, 89 |
| Conread position: | 451-623 |
| Cow position: | chr15:27108861-27108684 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 456-631 |
| Cow position: | chr15:30042444-30042616 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 490-690 |
| Cow position: | chr15:34715845-34716040 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 493-623 |
| Cow position: | chr15:35219663-35219534 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 115, 9 |
| Conread position: | 498-635 |
| Cow position: | chr15:27395196-27395332 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 507-620 |
| Cow position: | chr15:36363570-36363681 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
Show alignments to all cow chromosomes.