Cow genome map

Conread name: Ss1.1-Pig4-TMW8068J22.3

Conread position: 174-429
Cow position: chr16:11354730-11354464 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 195
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 7, 66

Conread position: 176-376
Cow position: chr16:40664745-40664959 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 91, 0

Conread position: 180-628
Cow position: chr16:12729413-12728960 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 16

Conread position: 183-617
Cow position: chr16:11588716-11588269 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 74

Conread position: 183-623
Cow position: chr16:55087563-55087119 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 306
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 33, 224

Conread position: 185-350
Cow position: chr16:2538027-2537857 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 114, 85

Conread position: 188-332
Cow position: chr16:23412844-23412689 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 79, 0

Conread position: 189-431
Cow position: chr16:24890581-24890325 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 188
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 68, 0

Conread position: 190-346
Cow position: chr16:23006778-23006939 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 9, 29

Conread position: 190-407
Cow position: chr16:22607109-22606877 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 81, 0

Conread position: 191-416
Cow position: chr16:19311489-19311250 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 63, 0

Conread position: 191-431
Cow position: chr16:11336292-11336039 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 182
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 80, 173

Conread position: 191-617
Cow position: chr16:51805700-51805289 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 43

Conread position: 192-407
Cow position: chr16:28424221-28423982 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 78, 0

Conread position: 192-415
Cow position: chr16:15318689-15318911 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 167
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 80, 133

Conread position: 192-422
Cow position: chr16:42338048-42338281 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 177
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 7, 17

Conread position: 192-431
Cow position: chr16:37365137-37364889 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 174
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 60, 178

Conread position: 192-615
Cow position: chr16:13411284-13411706 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 53

Conread position: 192-617
Cow position: chr16:50816610-50816200 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 30

Conread position: 192-618
Cow position: chr16:44753615-44754040 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 26

Conread position: 192-622
Cow position: chr16:34866989-34866554 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 9

Conread position: 192-642
Cow position: chr16:598925-598489 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 19

Conread position: 193-612
Cow position: chr16:35159919-35159517 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 302
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 74, 24

Conread position: 193-619
Cow position: chr16:33149557-33149977 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 220

Conread position: 194-619
Cow position: chr16:38331944-38332378 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 347

Conread position: 195-407
Cow position: chr16:13816349-13816128 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 72, 166

Conread position: 199-432
Cow position: chr16:22770131-22769882 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 65, 0

Conread position: 202-619
Cow position: chr16:13350826-13351239 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 51

Conread position: 203-431
Cow position: chr16:51985001-51984774 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 173
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 64, 178

Conread position: 205-619
Cow position: chr16:31731981-31732393 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 206

Conread position: 225-455
Cow position: chr16:6303302-6303534 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 47, 82

Conread position: 233-618
Cow position: chr16:25933526-25933912 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 255-432
Cow position: chr16:39398693-39398493 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 255-620
Cow position: chr16:11045010-11044646 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 267
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 12, 137

Conread position: 294-619
Cow position: chr16:55146230-55146547 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 242
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 41, 59

Conread position: 309-623
Cow position: chr16:53269970-53270277 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 90

Conread position: 312-622
Cow position: chr16:3114792-3115104 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 236
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 24, 7

Conread position: 316-638
Cow position: chr16:15995802-15996112 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 25

Conread position: 319-617
Cow position: chr16:30038912-30039234 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 226
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 17, 51

Conread position: 347-623
Cow position: chr16:54925384-54925658 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 94

Conread position: 353-619
Cow position: chr16:34265321-34265049 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 56

Conread position: 361-619
Cow position: chr16:47217293-47217045 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 198
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 10, 40

Conread position: 362-565
Cow position: chr16:2537628-2537445 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 22, 64

Conread position: 362-615
Cow position: chr16:40665181-40665433 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 77

Conread position: 364-632
Cow position: chr16:2703354-2703090 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 60

Conread position: 367-628
Cow position: chr16:43838915-43838649 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 195
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 25, 0

Conread position: 413-618
Cow position: chr16:10418178-10418383 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 77, 150

Conread position: 423-623
Cow position: chr16:27980884-27981072 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 159
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 52, 0

Conread position: 430-618
Cow position: chr16:18764746-18764560 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 151
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 97, 0

Conread position: 430-618
Cow position: chr16:23873221-23873408 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 34, 0

Conread position: 430-619
Cow position: chr16:13317332-13317525 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 152
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 5, 0

Conread position: 430-619
Cow position: chr16:15319865-15320056 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 18, 93

Conread position: 430-619
Cow position: chr16:23410466-23410278 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 147
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 53, 90

Conread position: 430-620
Cow position: chr16:24302962-24303164 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 430-623
Cow position: chr16:42341253-42341447 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 162
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 8

Conread position: 430-648
Cow position: chr16:26328553-26328772 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 58, 33

Conread position: 431-613
Cow position: chr16:9410182-9409994 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 150
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 35, 162

Conread position: 434-623
Cow position: chr16:19307354-19307172 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 56, 136

Conread position: 434-623
Cow position: chr16:52930388-52930578 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 154
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 83, 59

Conread position: 434-691
Cow position: chr16:23007542-23007806 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 194
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 47, 102

Conread position: 436-601
Cow position: chr16:51983627-51983461 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 133
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 45, 29

Conread position: 436-690
Cow position: chr16:47484755-47484504 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 190
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 43, 133

Conread position: 445-619
Cow position: chr16:23636636-23636472 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 43, 64

Conread position: 448-618
Cow position: chr16:38119630-38119804 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 138
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 37, 0

Conread position: 450-623
Cow position: chr16:56704447-56704274 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 41, 79

Conread position: 456-620
Cow position: chr16:37576551-37576721 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 34, 62

Conread position: 457-595
Cow position: chr16:22766379-22766238 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 458-619
Cow position: chr16:31774283-31774437 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 27, 115

Conread position: 462-619
Cow position: chr16:40802332-40802174 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 20, 93

Conread position: 492-619
Cow position: chr16:11354449-11354322 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 493-619
Cow position: chr16:42287842-42287716 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 493-658
Cow position: chr16:36914411-36914579 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 133
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 131, 66

Conread position: 494-623
Cow position: chr16:11336025-11335898 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 508-619
Cow position: chr16:27810190-27810299 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 95
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 29, 0

Show alignments to all cow chromosomes.