Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8068J22.3 |
| Conread position: | 179-617 |
| Cow position: | chr17:10884418-10883992 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 150 |
| Conread position: | 179-619 |
| Cow position: | chr17:17557838-17558302 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 13 |
| Conread position: | 192-425 |
| Cow position: | chr17:18837691-18837937 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 79, 90 |
| Conread position: | 192-429 |
| Cow position: | chr17:13503331-13503078 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 192-432 |
| Cow position: | chr17:20009861-20010112 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 77, 236 |
| Conread position: | 192-617 |
| Cow position: | chr17:6873286-6873711 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 85 |
| Conread position: | 192-617 |
| Cow position: | chr17:14295863-14295429 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 166 |
| Conread position: | 193-396 |
| Cow position: | chr17:33981791-33982010 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 196-390 |
| Cow position: | chr17:20474929-20474723 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 199-586 |
| Cow position: | chr17:4807706-4808114 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 406 |
| Conread position: | 202-651 |
| Cow position: | chr17:43936684-43937131 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 35 |
| Conread position: | 208-617 |
| Cow position: | chr17:21896354-21895975 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 72 |
| Conread position: | 208-619 |
| Cow position: | chr17:42754208-42754618 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 288 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 26, 114 |
| Conread position: | 224-429 |
| Cow position: | chr17:1653577-1653359 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 228-619 |
| Cow position: | chr17:27989422-27989809 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 205 |
| Conread position: | 236-429 |
| Cow position: | chr17:30492928-30493126 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 236-624 |
| Cow position: | chr17:20638329-20638701 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 286 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 63, 176 |
| Conread position: | 248-622 |
| Cow position: | chr17:34753612-34753221 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 266 |
| Conread position: | 255-628 |
| Cow position: | chr17:33401897-33402290 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 269-620 |
| Cow position: | chr17:17569013-17568656 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 92 |
| Conread position: | 273-653 |
| Cow position: | chr17:23896505-23896871 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 16, 65 |
| Conread position: | 297-525 |
| Cow position: | chr17:6859611-6859377 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 39, 20 |
| Conread position: | 298-430 |
| Cow position: | chr17:7447768-7447635 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 47 |
| Conread position: | 299-563 |
| Cow position: | chr17:42356974-42357236 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 25, 164 |
| Conread position: | 307-619 |
| Cow position: | chr17:16887405-16887723 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 100 |
| Conread position: | 326-609 |
| Cow position: | chr17:5763477-5763184 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 219 |
| Conread position: | 344-619 |
| Cow position: | chr17:44205832-44205577 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 363-639 |
| Cow position: | chr17:28523381-28523653 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 13, 65 |
| Conread position: | 366-616 |
| Cow position: | chr17:12654731-12654480 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 17, 58 |
| Conread position: | 417-618 |
| Cow position: | chr17:20012219-20012411 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 129, 58 |
| Conread position: | 420-619 |
| Cow position: | chr17:3278128-3277925 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 21, 172 |
| Conread position: | 430-592 |
| Cow position: | chr17:9207042-9207205 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 45, 34 |
| Conread position: | 430-606 |
| Cow position: | chr17:1651230-1651051 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 430-616 |
| Cow position: | chr17:13387972-13387778 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 52, 166 |
| Conread position: | 430-618 |
| Cow position: | chr17:37984258-37984075 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 58, 151 |
| Conread position: | 430-619 |
| Cow position: | chr17:30495608-30495795 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 430-623 |
| Cow position: | chr17:26387393-26387201 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 60, 106 |
| Conread position: | 430-623 |
| Cow position: | chr17:36695013-36694815 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 432-621 |
| Cow position: | chr17:657968-657779 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 149, 156 |
| Conread position: | 433-576 |
| Cow position: | chr17:19355317-19355170 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 433-584 |
| Cow position: | chr17:17086098-17085946 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 434-617 |
| Cow position: | chr17:38379734-38379555 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 88, 44 |
| Conread position: | 434-620 |
| Cow position: | chr17:35028896-35029082 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 173, 100 |
| Conread position: | 434-622 |
| Cow position: | chr17:11850756-11850576 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 436-619 |
| Cow position: | chr17:5195924-5196105 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 153 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 101, 70 |
| Conread position: | 438-624 |
| Cow position: | chr17:40672049-40671857 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 443-572 |
| Cow position: | chr17:24158328-24158460 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 445-581 |
| Cow position: | chr17:32959559-32959423 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 43, 38 |
| Conread position: | 457-690 |
| Cow position: | chr17:33982035-33982261 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 23, 42 |
| Conread position: | 484-616 |
| Cow position: | chr17:1223104-1223236 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 486-637 |
| Cow position: | chr17:24096753-24096903 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 493-618 |
| Cow position: | chr17:7447621-7447499 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 496-612 |
| Cow position: | chr17:37798343-37798459 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 499-630 |
| Cow position: | chr17:40090887-40091018 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 65, 22 |
| Conread position: | 525-619 |
| Cow position: | chr17:5543435-5543341 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 81 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.