Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8068J22.3 |
| Conread position: | 119-407 |
| Cow position: | chr18:41935122-41934817 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 159-431 |
| Cow position: | chr18:36846671-36846941 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 112, 20 |
| Conread position: | 181-617 |
| Cow position: | chr18:18791951-18792391 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 180 |
| Conread position: | 185-430 |
| Cow position: | chr18:8031489-8031237 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 185-525 |
| Cow position: | chr18:15849289-15849611 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 114, 70 |
| Conread position: | 185-618 |
| Cow position: | chr18:23724196-23724643 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 7 |
| Conread position: | 188-619 |
| Cow position: | chr18:13353798-13354238 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 63 |
| Conread position: | 189-617 |
| Cow position: | chr18:16800801-16800343 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 29 |
| Conread position: | 190-617 |
| Cow position: | chr18:42573233-42573650 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 176 |
| Conread position: | 190-619 |
| Cow position: | chr18:36882971-36882543 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 179 |
| Conread position: | 192-369 |
| Cow position: | chr18:32036497-32036313 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 75, 168 |
| Conread position: | 192-431 |
| Cow position: | chr18:11824746-11824994 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 106, 74 |
| Conread position: | 192-541 |
| Cow position: | chr18:53284206-53284552 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 81, 241 |
| Conread position: | 192-565 |
| Cow position: | chr18:21248604-21248225 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 169 |
| Conread position: | 192-618 |
| Cow position: | chr18:29210933-29211364 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 45 |
| Conread position: | 192-619 |
| Cow position: | chr18:23382418-23381981 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 174 |
| Conread position: | 193-407 |
| Cow position: | chr18:17765382-17765612 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 193-431 |
| Cow position: | chr18:9137934-9138181 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 80, 57 |
| Conread position: | 193-607 |
| Cow position: | chr18:12808733-12808318 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 97 |
| Conread position: | 193-618 |
| Cow position: | chr18:42562150-42562592 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 193-620 |
| Cow position: | chr18:26458834-26458416 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 74 |
| Conread position: | 194-403 |
| Cow position: | chr18:14718536-14718325 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 69, 89 |
| Conread position: | 195-382 |
| Cow position: | chr18:249727-249922 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 195-418 |
| Cow position: | chr18:16198580-16198356 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 76, 52 |
| Conread position: | 204-407 |
| Cow position: | chr18:17816304-17816093 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 63, 7 |
| Conread position: | 207-617 |
| Cow position: | chr18:51555479-51555908 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 344 |
| Conread position: | 208-623 |
| Cow position: | chr18:29656954-29657376 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 5 |
| Conread position: | 210-454 |
| Cow position: | chr18:29611714-29611975 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 225-622 |
| Cow position: | chr18:15860209-15860615 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 295 |
| Conread position: | 252-624 |
| Cow position: | chr18:19304603-19304988 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 254-576 |
| Cow position: | chr18:10636084-10636424 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 11, 310 |
| Conread position: | 255-618 |
| Cow position: | chr18:7661713-7662068 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 221 |
| Conread position: | 255-621 |
| Cow position: | chr18:3995769-3995410 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 255 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 82, 160 |
| Conread position: | 256-431 |
| Cow position: | chr18:26509831-26510016 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 16, 113 |
| Conread position: | 260-594 |
| Cow position: | chr18:35461889-35461548 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 60 |
| Conread position: | 278-617 |
| Cow position: | chr18:27232817-27233148 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 21, 153 |
| Conread position: | 298-568 |
| Cow position: | chr18:2492351-2492626 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 310-623 |
| Cow position: | chr18:26319446-26319122 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 205 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 26, 198 |
| Conread position: | 347-616 |
| Cow position: | chr18:2969795-2969528 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 357-685 |
| Cow position: | chr18:1579595-1579914 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 72, 102 |
| Conread position: | 362-613 |
| Cow position: | chr18:50838635-50838881 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 76 |
| Conread position: | 362-619 |
| Cow position: | chr18:32035757-32035500 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 79 |
| Conread position: | 364-613 |
| Cow position: | chr18:47471866-47471632 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 50 |
| Conread position: | 365-617 |
| Cow position: | chr18:4000549-4000801 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 120 |
| Conread position: | 372-619 |
| Cow position: | chr18:24460244-24459995 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 99 |
| Conread position: | 385-691 |
| Cow position: | chr18:32255929-32255642 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 31 |
| Conread position: | 422-622 |
| Cow position: | chr18:30494836-30494639 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 424-619 |
| Cow position: | chr18:30022619-30022817 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 48, 180 |
| Conread position: | 426-542 |
| Cow position: | chr18:42546799-42546680 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 428-627 |
| Cow position: | chr18:28965592-28965794 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 60, 129 |
| Conread position: | 430-616 |
| Cow position: | chr18:9139432-9139621 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 157 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 430-623 |
| Cow position: | chr18:16250726-16250917 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 430-623 |
| Cow position: | chr18:36851038-36851226 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 52, 113 |
| Conread position: | 434-621 |
| Cow position: | chr18:29784242-29784053 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 49, 77 |
| Conread position: | 437-619 |
| Cow position: | chr18:9343271-9343445 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 440-614 |
| Cow position: | chr18:22747046-22746877 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 440-618 |
| Cow position: | chr18:27519906-27519725 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 448-620 |
| Cow position: | chr18:8029071-8028906 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 450-619 |
| Cow position: | chr18:45740622-45740786 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 38, 92 |
| Conread position: | 456-576 |
| Cow position: | chr18:11826205-11826328 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 458-620 |
| Cow position: | chr18:22853302-22853148 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 26, 74 |
| Conread position: | 463-676 |
| Cow position: | chr18:16196136-16195919 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 104, 185 |
| Conread position: | 466-618 |
| Cow position: | chr18:47930150-47929995 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 483-605 |
| Cow position: | chr18:38674873-38674992 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 493-622 |
| Cow position: | chr18:53765308-53765438 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 71, 28 |
| Conread position: | 496-622 |
| Cow position: | chr18:27723744-27723614 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
Show alignments to all cow chromosomes.