Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8068J22.3 |
| Conread position: | 179-623 |
| Cow position: | chr19:2446835-2446390 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 224 |
| Conread position: | 179-656 |
| Cow position: | chr19:6950980-6951457 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 138 |
| Conread position: | 183-397 |
| Cow position: | chr19:31326471-31326688 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 109 |
| Conread position: | 186-622 |
| Cow position: | chr19:28065637-28066071 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 252 |
| Conread position: | 187-350 |
| Cow position: | chr19:21278298-21278470 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 187-407 |
| Cow position: | chr19:32843596-32843830 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 187-623 |
| Cow position: | chr19:36795117-36795532 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 306 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 84, 62 |
| Conread position: | 190-407 |
| Cow position: | chr19:22058207-22058422 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 106, 62 |
| Conread position: | 190-423 |
| Cow position: | chr19:15991090-15990834 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 191-431 |
| Cow position: | chr19:45703053-45703295 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 192-350 |
| Cow position: | chr19:13268289-13268132 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 80, 109 |
| Conread position: | 192-395 |
| Cow position: | chr19:18282413-18282201 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 67, 137 |
| Conread position: | 192-407 |
| Cow position: | chr19:12359503-12359269 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 192-412 |
| Cow position: | chr19:42982330-42982562 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 192-415 |
| Cow position: | chr19:38262485-38262718 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 192-431 |
| Cow position: | chr19:10619406-10619149 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 73, 194 |
| Conread position: | 192-431 |
| Cow position: | chr19:42210466-42210221 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 111, 149 |
| Conread position: | 192-533 |
| Cow position: | chr19:29986129-29986460 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 75, 236 |
| Conread position: | 192-617 |
| Cow position: | chr19:43892710-43893128 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 37 |
| Conread position: | 192-624 |
| Cow position: | chr19:2863392-2863824 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 237 |
| Conread position: | 192-633 |
| Cow position: | chr19:13664178-13663709 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 314 |
| Conread position: | 192-633 |
| Cow position: | chr19:35979943-35980381 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 57 |
| Conread position: | 193-618 |
| Cow position: | chr19:17171171-17170749 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 78 |
| Conread position: | 194-620 |
| Cow position: | chr19:55205604-55205178 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 129 |
| Conread position: | 196-561 |
| Cow position: | chr19:41839007-41839377 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 119 |
| Conread position: | 199-402 |
| Cow position: | chr19:19850928-19850716 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 72, 48 |
| Conread position: | 199-620 |
| Cow position: | chr19:25891969-25891550 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 48 |
| Conread position: | 208-429 |
| Cow position: | chr19:7025555-7025780 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 153 |
| Conread position: | 208-617 |
| Cow position: | chr19:24913097-24912690 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 58 |
| Conread position: | 210-526 |
| Cow position: | chr19:22764414-22764717 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 239 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 54, 84 |
| Conread position: | 211-619 |
| Cow position: | chr19:13466041-13465631 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 150 |
| Conread position: | 223-616 |
| Cow position: | chr19:5377767-5378162 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 67 |
| Conread position: | 225-623 |
| Cow position: | chr19:54303011-54303408 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 295 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 183 |
| Conread position: | 251-602 |
| Cow position: | chr19:20062891-20063235 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 166 |
| Conread position: | 255-619 |
| Cow position: | chr19:23827724-23827369 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 16, 112 |
| Conread position: | 275-431 |
| Cow position: | chr19:5087627-5087795 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 149 |
| Conread position: | 300-560 |
| Cow position: | chr19:56067219-56067481 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 36, 168 |
| Conread position: | 304-620 |
| Cow position: | chr19:36489486-36489792 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 32, 53 |
| Conread position: | 314-523 |
| Cow position: | chr19:22923775-22923990 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 32, 42 |
| Conread position: | 322-542 |
| Cow position: | chr19:23041480-23041704 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 14, 76 |
| Conread position: | 345-618 |
| Cow position: | chr19:56317321-56317602 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 11, 86 |
| Conread position: | 358-520 |
| Cow position: | chr19:55769451-55769622 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 358-619 |
| Cow position: | chr19:16825964-16826230 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 116 |
| Conread position: | 363-650 |
| Cow position: | chr19:28926557-28926282 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 215 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 370-619 |
| Cow position: | chr19:21278658-21278897 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 13, 59 |
| Conread position: | 370-620 |
| Cow position: | chr19:16058605-16058852 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 65, 7 |
| Conread position: | 395-677 |
| Cow position: | chr19:51101408-51101678 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 40, 81 |
| Conread position: | 421-616 |
| Cow position: | chr19:40967392-40967593 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 59, 75 |
| Conread position: | 430-611 |
| Cow position: | chr19:42342891-42343078 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 430-619 |
| Cow position: | chr19:19295333-19295141 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 153 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 430-642 |
| Cow position: | chr19:12372846-12373056 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 127, 48 |
| Conread position: | 432-615 |
| Cow position: | chr19:4363903-4363716 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 91 |
| Conread position: | 433-619 |
| Cow position: | chr19:45148734-45148549 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 17, 5 |
| Conread position: | 434-619 |
| Cow position: | chr19:21785162-21784974 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 434-619 |
| Cow position: | chr19:31326686-31326866 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 50, 92 |
| Conread position: | 434-619 |
| Cow position: | chr19:51402484-51402302 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 54, 26 |
| Conread position: | 435-619 |
| Cow position: | chr19:21862074-21862266 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 448-637 |
| Cow position: | chr19:42982730-42982923 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 448-701 |
| Cow position: | chr19:39851265-39851015 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 450-608 |
| Cow position: | chr19:2216227-2216386 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 450-620 |
| Cow position: | chr19:5088145-5088313 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 450-621 |
| Cow position: | chr19:7027595-7027767 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 35, 90 |
| Conread position: | 457-617 |
| Cow position: | chr19:15826524-15826363 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 31, 84 |
| Conread position: | 457-617 |
| Cow position: | chr19:55537788-55537623 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 472-623 |
| Cow position: | chr19:8861963-8862114 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 483-619 |
| Cow position: | chr19:40881311-40881447 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 489-620 |
| Cow position: | chr19:36321157-36321027 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 63, 48 |
| Conread position: | 493-619 |
| Cow position: | chr19:38262744-38262872 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 496-619 |
| Cow position: | chr19:13266931-13266808 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 44, 36 |
| Conread position: | 496-623 |
| Cow position: | chr19:45703434-45703561 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.