Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8068J22.3 |
| Conread position: | 181-397 |
| Cow position: | chr20:4695183-4694945 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 183-478 |
| Cow position: | chr20:36928796-36929096 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 88, 95 |
| Conread position: | 185-623 |
| Cow position: | chr20:19271291-19271745 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 14 |
| Conread position: | 186-415 |
| Cow position: | chr20:8214148-8213913 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 81, 150 |
| Conread position: | 187-605 |
| Cow position: | chr20:24693747-24693307 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 189-407 |
| Cow position: | chr20:24940127-24939897 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 189-597 |
| Cow position: | chr20:7796159-7796577 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 193 |
| Conread position: | 191-431 |
| Cow position: | chr20:22656511-22656759 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 108, 17 |
| Conread position: | 191-617 |
| Cow position: | chr20:26855315-26854904 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 79 |
| Conread position: | 191-618 |
| Cow position: | chr20:16991287-16990861 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 47 |
| Conread position: | 192-373 |
| Cow position: | chr20:8306827-8307021 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 192-395 |
| Cow position: | chr20:23654737-23654950 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 75, 9 |
| Conread position: | 192-404 |
| Cow position: | chr20:22865434-22865210 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 79, 15 |
| Conread position: | 192-617 |
| Cow position: | chr20:33094867-33095281 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 43 |
| Conread position: | 192-617 |
| Cow position: | chr20:35629902-35630337 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 258 |
| Conread position: | 192-618 |
| Cow position: | chr20:30702126-30701701 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 151 |
| Conread position: | 192-619 |
| Cow position: | chr20:25406138-25405718 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 80 |
| Conread position: | 193-619 |
| Cow position: | chr20:41317237-41317677 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 171 |
| Conread position: | 193-623 |
| Cow position: | chr20:21500674-21501108 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 44 |
| Conread position: | 193-638 |
| Cow position: | chr20:8860616-8861071 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 43 |
| Conread position: | 194-660 |
| Cow position: | chr20:1275355-1275809 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 312 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 195-636 |
| Cow position: | chr20:13685149-13684698 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 91 |
| Conread position: | 208-617 |
| Cow position: | chr20:36758660-36758240 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 19 |
| Conread position: | 250-431 |
| Cow position: | chr20:2973156-2973344 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 22, 110 |
| Conread position: | 274-407 |
| Cow position: | chr20:6129223-6129085 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 85 |
| Conread position: | 300-618 |
| Cow position: | chr20:42868950-42869255 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 362-623 |
| Cow position: | chr20:7861919-7862182 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 8 |
| Conread position: | 366-617 |
| Cow position: | chr20:6053262-6053012 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 17, 61 |
| Conread position: | 367-619 |
| Cow position: | chr20:34311224-34311481 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 100 |
| Conread position: | 385-633 |
| Cow position: | chr20:30827391-30827139 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 166 |
| Conread position: | 387-618 |
| Cow position: | chr20:37170100-37169861 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 425-619 |
| Cow position: | chr20:10724363-10724178 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 430-616 |
| Cow position: | chr20:22861308-22861125 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 60, 23 |
| Conread position: | 430-618 |
| Cow position: | chr20:20742392-20742587 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 158 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 430-620 |
| Cow position: | chr20:5275211-5275019 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 11, 112 |
| Conread position: | 436-690 |
| Cow position: | chr20:10716922-10717174 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 21, 90 |
| Conread position: | 440-617 |
| Cow position: | chr20:25303516-25303346 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 457-617 |
| Cow position: | chr20:19443104-19443264 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 142 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 31, 73 |
| Conread position: | 457-692 |
| Cow position: | chr20:37990677-37990906 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 31, 130 |
| Conread position: | 459-623 |
| Cow position: | chr20:2834081-2834247 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 21, 51 |
| Conread position: | 460-617 |
| Cow position: | chr20:2975239-2975397 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 11, 82 |
| Conread position: | 481-618 |
| Cow position: | chr20:36929298-36929433 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 493-615 |
| Cow position: | chr20:26512068-26512186 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 498-620 |
| Cow position: | chr20:34764932-34764812 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 499-639 |
| Cow position: | chr20:42907252-42907385 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.