Cow genome map

Conread name: Ss1.1-Pig4-TMW8068J22.3

Conread position: 147-630
Cow position: chr21:20385397-20384944 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 315
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 122, 17

Conread position: 171-431
Cow position: chr21:33197210-33196949 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 201
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 100, 53

Conread position: 187-407
Cow position: chr21:37367813-37367584 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 174
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 82, 169

Conread position: 188-562
Cow position: chr21:13455707-13455342 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 281
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 111, 74

Conread position: 189-379
Cow position: chr21:11299756-11299956 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 81, 21

Conread position: 189-431
Cow position: chr21:42906296-42906546 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 78, 132

Conread position: 190-325
Cow position: chr21:30218515-30218656 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 77, 63

Conread position: 190-620
Cow position: chr21:34415687-34416108 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 109

Conread position: 191-332
Cow position: chr21:28157942-28158083 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 76, 42

Conread position: 191-390
Cow position: chr21:12453194-12452982 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 81, 150

Conread position: 191-618
Cow position: chr21:4262099-4261676 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 140

Conread position: 191-625
Cow position: chr21:26869319-26869766 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 253

Conread position: 192-407
Cow position: chr21:49646971-49647195 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 72, 185

Conread position: 192-422
Cow position: chr21:16776210-16776439 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 156, 89

Conread position: 192-431
Cow position: chr21:17382295-17382536 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 75, 209

Conread position: 192-431
Cow position: chr21:18082605-18082357 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 75, 177

Conread position: 192-617
Cow position: chr21:40214079-40214498 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 299
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 42, 251

Conread position: 192-619
Cow position: chr21:28147933-28148372 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 196

Conread position: 192-619
Cow position: chr21:37197502-37197097 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 298
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 81, 165

Conread position: 192-690
Cow position: chr21:16337243-16336761 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 31

Conread position: 193-431
Cow position: chr21:17223952-17223703 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 174
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 74, 84

Conread position: 193-619
Cow position: chr21:38927062-38926620 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 320

Conread position: 193-623
Cow position: chr21:45299417-45298981 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 141

Conread position: 198-407
Cow position: chr21:448226-448446 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 5, 180

Conread position: 203-431
Cow position: chr21:47730858-47730621 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 181
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 96, 63

Conread position: 203-615
Cow position: chr21:7168795-7169210 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 104

Conread position: 208-388
Cow position: chr21:30616122-30616314 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 56, 0

Conread position: 220-622
Cow position: chr21:29834156-29834532 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 53

Conread position: 223-637
Cow position: chr21:33974165-33973744 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 161

Conread position: 224-431
Cow position: chr21:27199869-27199646 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 225-491
Cow position: chr21:1721334-1721059 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 210
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 49, 129

Conread position: 238-658
Cow position: chr21:29868748-29868326 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 12

Conread position: 239-429
Cow position: chr21:43038189-43037993 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 34, 121

Conread position: 245-622
Cow position: chr21:22743868-22744263 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 169

Conread position: 298-616
Cow position: chr21:10796475-10796148 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 81

Conread position: 299-616
Cow position: chr21:45963067-45963405 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 240
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 27, 44

Conread position: 306-590
Cow position: chr21:908154-907880 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 212
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 30, 99

Conread position: 307-619
Cow position: chr21:24090144-24089828 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 91

Conread position: 310-616
Cow position: chr21:43803727-43804028 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 26, 120

Conread position: 316-691
Cow position: chr21:34167064-34167413 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 267
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 67, 26

Conread position: 346-623
Cow position: chr21:10120380-10120662 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 26

Conread position: 353-617
Cow position: chr21:11300190-11300457 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 16, 42

Conread position: 357-620
Cow position: chr21:18782452-18782711 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 200
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 26, 13

Conread position: 361-619
Cow position: chr21:30171034-30171285 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 197
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 19, 55

Conread position: 364-619
Cow position: chr21:9446543-9446292 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 11

Conread position: 365-617
Cow position: chr21:41540102-41540359 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 234

Conread position: 370-611
Cow position: chr21:8176137-8176380 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 184
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 13, 103

Conread position: 382-617
Cow position: chr21:6690240-6690466 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 178
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 97, 46

Conread position: 409-619
Cow position: chr21:36952811-36952607 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 168
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 79, 7

Conread position: 424-622
Cow position: chr21:8381532-8381735 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 424-622
Cow position: chr21:17384102-17384289 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 152
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 59, 0

Conread position: 430-610
Cow position: chr21:16800396-16800212 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 14, 96

Conread position: 430-619
Cow position: chr21:3354871-3354687 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 146
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 18, 0

Conread position: 430-619
Cow position: chr21:18080457-18080271 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 143
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 34, 0

Conread position: 430-619
Cow position: chr21:42907016-42907208 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 154
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 58, 0

Conread position: 430-623
Cow position: chr21:27197881-27197686 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 58, 153

Conread position: 430-625
Cow position: chr21:34174314-34174115 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 153
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 29, 145

Conread position: 432-629
Cow position: chr21:12450785-12450588 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 157
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 53, 70

Conread position: 434-618
Cow position: chr21:45450833-45450639 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 48, 0

Conread position: 434-620
Cow position: chr21:30221350-30221535 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 57, 88

Conread position: 435-623
Cow position: chr21:33196608-33196418 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 156
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 51, 141

Conread position: 436-689
Cow position: chr21:38863377-38863635 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 240

Conread position: 438-619
Cow position: chr21:3210732-3210907 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 145
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 12, 8

Conread position: 439-617
Cow position: chr21:4888679-4888499 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 41, 9

Conread position: 445-631
Cow position: chr21:10820329-10820140 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 457-618
Cow position: chr21:32334208-32334046 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 14, 75

Conread position: 459-618
Cow position: chr21:46898937-46899093 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 60, 13

Conread position: 459-619
Cow position: chr21:13501545-13501390 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 12, 22

Conread position: 464-623
Cow position: chr21:6847311-6847472 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 26, 129

Conread position: 465-638
Cow position: chr21:37310806-37310630 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 20, 59

Conread position: 496-619
Cow position: chr21:47730604-47730481 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 496-675
Cow position: chr21:27769860-27770040 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 5, 59

Show alignments to all cow chromosomes.