Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8068J22.3 |
| Conread position: | 120-431 |
| Cow position: | chr22:24144586-24144910 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 182-419 |
| Cow position: | chr22:27505492-27505265 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 154, 31 |
| Conread position: | 184-607 |
| Cow position: | chr22:46733081-46732644 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 6, 12 |
| Conread position: | 184-635 |
| Cow position: | chr22:4700133-4699648 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 324 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 77, 8 |
| Conread position: | 187-381 |
| Cow position: | chr22:39385126-39385324 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 188-399 |
| Cow position: | chr22:3077754-3077535 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 102, 68 |
| Conread position: | 188-620 |
| Cow position: | chr22:20171437-20171007 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 171 |
| Conread position: | 189-561 |
| Cow position: | chr22:12354992-12355369 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 266 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 82, 230 |
| Conread position: | 190-377 |
| Cow position: | chr22:37199042-37199240 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 74, 133 |
| Conread position: | 192-334 |
| Cow position: | chr22:43007624-43007477 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 74, 132 |
| Conread position: | 192-503 |
| Cow position: | chr22:5265040-5265353 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 42 |
| Conread position: | 192-619 |
| Cow position: | chr22:23748214-23748658 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 62 |
| Conread position: | 192-619 |
| Cow position: | chr22:25123852-25123421 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 92 |
| Conread position: | 192-619 |
| Cow position: | chr22:27642464-27642883 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 12 |
| Conread position: | 192-630 |
| Cow position: | chr22:25259121-25258687 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 130 |
| Conread position: | 194-619 |
| Cow position: | chr22:6246320-6246761 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 256 |
| Conread position: | 194-625 |
| Cow position: | chr22:43779903-43779473 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 166 |
| Conread position: | 195-397 |
| Cow position: | chr22:14511863-14511646 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 74, 168 |
| Conread position: | 195-619 |
| Cow position: | chr22:25662965-25662530 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 13 |
| Conread position: | 195-620 |
| Cow position: | chr22:37376549-37376135 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 130 |
| Conread position: | 210-408 |
| Cow position: | chr22:16321906-16321700 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 63, 163 |
| Conread position: | 214-407 |
| Cow position: | chr22:21666583-21666387 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 57, 108 |
| Conread position: | 214-619 |
| Cow position: | chr22:27571750-27572146 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 132 |
| Conread position: | 218-431 |
| Cow position: | chr22:39744616-39744839 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 55, 110 |
| Conread position: | 222-407 |
| Cow position: | chr22:3025826-3026019 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 77, 61 |
| Conread position: | 225-623 |
| Cow position: | chr22:23706020-23705621 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 67 |
| Conread position: | 239-627 |
| Cow position: | chr22:24552362-24551940 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 254-654 |
| Cow position: | chr22:17686467-17686890 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 303 |
| Conread position: | 257-632 |
| Cow position: | chr22:39341671-39342045 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 187 |
| Conread position: | 268-431 |
| Cow position: | chr22:44085829-44086003 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 300-619 |
| Cow position: | chr22:47449535-47449217 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 174 |
| Conread position: | 361-618 |
| Cow position: | chr22:4244828-4244585 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 370-679 |
| Cow position: | chr22:4079136-4078825 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 13, 97 |
| Conread position: | 372-617 |
| Cow position: | chr22:47429824-47430063 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 376-619 |
| Cow position: | chr22:25767014-25766772 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 55 |
| Conread position: | 385-618 |
| Cow position: | chr22:37199210-37199443 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 10, 34 |
| Conread position: | 386-619 |
| Cow position: | chr22:39901961-39901727 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 31 |
| Conread position: | 386-624 |
| Cow position: | chr22:28588581-28588359 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 191, 36 |
| Conread position: | 394-623 |
| Cow position: | chr22:40530722-40530945 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 395-642 |
| Cow position: | chr22:6773922-6774178 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 30, 111 |
| Conread position: | 415-619 |
| Cow position: | chr22:10726695-10726894 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 64, 12 |
| Conread position: | 419-610 |
| Cow position: | chr22:44087881-44088071 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 63, 56 |
| Conread position: | 430-539 |
| Cow position: | chr22:26095-25986 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 430-576 |
| Cow position: | chr22:22648203-22648051 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 430-618 |
| Cow position: | chr22:27041238-27041047 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 151 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 432-576 |
| Cow position: | chr22:39385777-39385925 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 434-618 |
| Cow position: | chr22:5781875-5782063 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 434-619 |
| Cow position: | chr22:39856985-39856799 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 57, 121 |
| Conread position: | 435-611 |
| Cow position: | chr22:19055110-19055287 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 437-618 |
| Cow position: | chr22:41371732-41371911 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 35, 144 |
| Conread position: | 440-691 |
| Cow position: | chr22:14511643-14511394 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 29, 206 |
| Conread position: | 443-607 |
| Cow position: | chr22:22001182-22001011 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 450-619 |
| Cow position: | chr22:10811145-10810987 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 452-619 |
| Cow position: | chr22:21666392-21666224 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 109 |
| Conread position: | 457-713 |
| Cow position: | chr22:39746729-39746985 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 21, 118 |
| Conread position: | 486-623 |
| Cow position: | chr22:45944696-45944828 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 489-619 |
| Cow position: | chr22:3072560-3072432 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 492-707 |
| Cow position: | chr22:45847757-45847967 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 154, 45 |
| Conread position: | 493-619 |
| Cow position: | chr22:27735061-27735187 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 496-618 |
| Cow position: | chr22:23814956-23814834 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 518-692 |
| Cow position: | chr22:8631476-8631307 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 101, 6 |
Show alignments to all cow chromosomes.