Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8068J22.3 |
| Conread position: | 137-581 |
| Cow position: | chr23:25132935-25133376 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 36 |
| Conread position: | 159-619 |
| Cow position: | chr23:27100268-27100733 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 14 |
| Conread position: | 171-431 |
| Cow position: | chr23:4559026-4558760 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 19, 195 |
| Conread position: | 177-621 |
| Cow position: | chr23:22985731-22986172 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 194 |
| Conread position: | 187-331 |
| Cow position: | chr23:19629663-19629511 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 188-431 |
| Cow position: | chr23:26127675-26127925 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 111, 69 |
| Conread position: | 189-623 |
| Cow position: | chr23:25142203-25142611 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 305 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 147, 46 |
| Conread position: | 190-420 |
| Cow position: | chr23:35133638-35133879 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 190-619 |
| Cow position: | chr23:32033468-32033917 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 92 |
| Conread position: | 190-623 |
| Cow position: | chr23:12148747-12148292 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 210 |
| Conread position: | 192-392 |
| Cow position: | chr23:5714672-5714878 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 107, 17 |
| Conread position: | 192-524 |
| Cow position: | chr23:29662724-29663060 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 72, 245 |
| Conread position: | 192-616 |
| Cow position: | chr23:40754249-40754668 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 303 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 80, 45 |
| Conread position: | 192-619 |
| Cow position: | chr23:5318442-5318011 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 149 |
| Conread position: | 192-620 |
| Cow position: | chr23:12585982-12586440 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 28 |
| Conread position: | 192-620 |
| Cow position: | chr23:24255786-24255350 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 169 |
| Conread position: | 193-371 |
| Cow position: | chr23:6515624-6515809 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 71, 177 |
| Conread position: | 193-381 |
| Cow position: | chr23:37300879-37301073 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 76, 166 |
| Conread position: | 193-431 |
| Cow position: | chr23:12946038-12946287 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 194-619 |
| Cow position: | chr23:27421907-27421466 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 237 |
| Conread position: | 196-375 |
| Cow position: | chr23:31071719-31071528 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 202-405 |
| Cow position: | chr23:26683243-26683027 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 202-619 |
| Cow position: | chr23:38354387-38353988 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 304 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 65, 167 |
| Conread position: | 202-623 |
| Cow position: | chr23:30680059-30680490 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 155 |
| Conread position: | 204-407 |
| Cow position: | chr23:24729553-24729340 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 95, 67 |
| Conread position: | 207-619 |
| Cow position: | chr23:7563010-7563435 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 244 |
| Conread position: | 208-635 |
| Cow position: | chr23:29150108-29149695 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 148 |
| Conread position: | 214-431 |
| Cow position: | chr23:29342420-29342193 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 57, 22 |
| Conread position: | 220-431 |
| Cow position: | chr23:675824-675603 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 73, 144 |
| Conread position: | 225-623 |
| Cow position: | chr23:183107-182710 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 254-618 |
| Cow position: | chr23:10683842-10683462 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 137 |
| Conread position: | 255-691 |
| Cow position: | chr23:37430536-37430988 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 39 |
| Conread position: | 268-431 |
| Cow position: | chr23:14600481-14600661 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 268-619 |
| Cow position: | chr23:26909168-26909515 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 76 |
| Conread position: | 286-635 |
| Cow position: | chr23:22691915-22691557 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 311-579 |
| Cow position: | chr23:34313530-34313795 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 25, 67 |
| Conread position: | 316-618 |
| Cow position: | chr23:15621276-15620982 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 20, 64 |
| Conread position: | 329-621 |
| Cow position: | chr23:22987016-22987297 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 358-622 |
| Cow position: | chr23:17419142-17418878 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 25, 85 |
| Conread position: | 362-619 |
| Cow position: | chr23:33003671-33003918 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 370-632 |
| Cow position: | chr23:37844586-37844327 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 66 |
| Conread position: | 388-634 |
| Cow position: | chr23:27922470-27922714 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 45, 76 |
| Conread position: | 423-529 |
| Cow position: | chr23:33509887-33509998 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 430-619 |
| Cow position: | chr23:33924523-33924712 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 50, 108 |
| Conread position: | 434-624 |
| Cow position: | chr23:11188405-11188220 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 436-623 |
| Cow position: | chr23:34097034-34096847 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 38, 111 |
| Conread position: | 439-621 |
| Cow position: | chr23:670272-670087 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 153 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 44, 81 |
| Conread position: | 450-604 |
| Cow position: | chr23:5556054-5556204 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 493-619 |
| Cow position: | chr23:14556822-14556695 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 496-619 |
| Cow position: | chr23:17630309-17630187 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 6 |
| Conread position: | 508-681 |
| Cow position: | chr23:17851651-17851479 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 112, 50 |
Show alignments to all cow chromosomes.