Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8068J22.3 |
| Conread position: | 140-621 |
| Cow position: | chr24:27649552-27650033 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 149-409 |
| Cow position: | chr24:14708482-14708226 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 121, 15 |
| Conread position: | 186-619 |
| Cow position: | chr24:26250176-26249747 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 242 |
| Conread position: | 190-407 |
| Cow position: | chr24:17859718-17859944 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 74, 165 |
| Conread position: | 191-413 |
| Cow position: | chr24:34546098-34545863 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 74, 231 |
| Conread position: | 191-433 |
| Cow position: | chr24:39579010-39578758 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 108, 77 |
| Conread position: | 192-407 |
| Cow position: | chr24:26396199-26395969 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 73, 164 |
| Conread position: | 192-431 |
| Cow position: | chr24:33517110-33516872 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 144, 28 |
| Conread position: | 192-433 |
| Cow position: | chr24:23636366-23636612 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 75, 196 |
| Conread position: | 192-462 |
| Cow position: | chr24:26625766-26625486 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 143, 67 |
| Conread position: | 192-548 |
| Cow position: | chr24:27475828-27475468 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 254 |
| Conread position: | 192-619 |
| Cow position: | chr24:37702570-37702123 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 309 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 18, 79 |
| Conread position: | 192-623 |
| Cow position: | chr24:32344379-32344820 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 121 |
| Conread position: | 193-407 |
| Cow position: | chr24:806345-806120 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 77, 162 |
| Conread position: | 193-431 |
| Cow position: | chr24:11125508-11125752 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 103, 72 |
| Conread position: | 195-618 |
| Cow position: | chr24:2696967-2696526 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 72, 30 |
| Conread position: | 199-619 |
| Cow position: | chr24:18361986-18362420 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 249 |
| Conread position: | 208-619 |
| Cow position: | chr24:405551-405128 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 10 |
| Conread position: | 210-427 |
| Cow position: | chr24:26037653-26037439 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 126, 59 |
| Conread position: | 225-617 |
| Cow position: | chr24:35563475-35563122 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 47, 111 |
| Conread position: | 226-431 |
| Cow position: | chr24:39749204-39749428 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 38, 125 |
| Conread position: | 226-619 |
| Cow position: | chr24:2306698-2306310 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 13 |
| Conread position: | 228-619 |
| Cow position: | chr24:44855725-44855336 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 229-460 |
| Cow position: | chr24:24485720-24485967 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 234-622 |
| Cow position: | chr24:38035724-38035352 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 281 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 67, 35 |
| Conread position: | 239-431 |
| Cow position: | chr24:31013320-31013520 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 30, 90 |
| Conread position: | 248-525 |
| Cow position: | chr24:33395848-33395562 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 215 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 25, 89 |
| Conread position: | 248-619 |
| Cow position: | chr24:4254252-4253895 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 24, 112 |
| Conread position: | 255-616 |
| Cow position: | chr24:9733724-9734097 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 14, 159 |
| Conread position: | 268-611 |
| Cow position: | chr24:889626-889959 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 301-618 |
| Cow position: | chr24:16165702-16165381 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 45, 73 |
| Conread position: | 310-431 |
| Cow position: | chr24:14770499-14770374 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 26, 103 |
| Conread position: | 315-624 |
| Cow position: | chr24:29073727-29074051 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 11, 94 |
| Conread position: | 330-618 |
| Cow position: | chr24:1834385-1834105 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 54 |
| Conread position: | 347-653 |
| Cow position: | chr24:17104420-17104114 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 362-620 |
| Cow position: | chr24:5678549-5678801 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 21, 71 |
| Conread position: | 430-544 |
| Cow position: | chr24:39751347-39751461 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 430-690 |
| Cow position: | chr24:7092611-7092873 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 57, 173 |
| Conread position: | 431-618 |
| Cow position: | chr24:17529254-17529066 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 433-638 |
| Cow position: | chr24:34543474-34543267 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 16, 148 |
| Conread position: | 434-613 |
| Cow position: | chr24:27236786-27236605 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 135, 107 |
| Conread position: | 434-619 |
| Cow position: | chr24:22143133-22143317 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 54, 104 |
| Conread position: | 439-613 |
| Cow position: | chr24:38849592-38849417 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 45, 103 |
| Conread position: | 445-692 |
| Cow position: | chr24:39037183-39037425 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 114, 34 |
| Conread position: | 456-618 |
| Cow position: | chr24:33423184-33423021 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 457-620 |
| Cow position: | chr24:31015765-31015930 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 29, 42 |
| Conread position: | 457-623 |
| Cow position: | chr24:21795992-21796158 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 33, 82 |
| Conread position: | 470-636 |
| Cow position: | chr24:30417666-30417493 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 488-618 |
| Cow position: | chr24:26037148-26037020 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 0 |
Show alignments to all cow chromosomes.