Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8068J22.3 |
| Conread position: | 158-623 |
| Cow position: | chr25:5767196-5766729 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 65 |
| Conread position: | 169-431 |
| Cow position: | chr25:26905753-26906029 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 169-623 |
| Cow position: | chr25:12620254-12620703 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 69 |
| Conread position: | 179-621 |
| Cow position: | chr25:15323217-15322789 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 92 |
| Conread position: | 186-431 |
| Cow position: | chr25:36916603-36916856 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 86, 50 |
| Conread position: | 189-691 |
| Cow position: | chr25:9565372-9565876 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 142 |
| Conread position: | 191-424 |
| Cow position: | chr25:14961118-14961341 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 145, 49 |
| Conread position: | 192-431 |
| Cow position: | chr25:14283584-14283833 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 74, 167 |
| Conread position: | 192-520 |
| Cow position: | chr25:26691604-26691942 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 107, 88 |
| Conread position: | 192-561 |
| Cow position: | chr25:32002581-32002217 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 81, 62 |
| Conread position: | 192-618 |
| Cow position: | chr25:35088481-35088927 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 64 |
| Conread position: | 192-619 |
| Cow position: | chr25:15459860-15460276 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 296 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 79, 132 |
| Conread position: | 192-623 |
| Cow position: | chr25:36906348-36905908 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 87 |
| Conread position: | 192-636 |
| Cow position: | chr25:24102961-24103386 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 61, 82 |
| Conread position: | 193-376 |
| Cow position: | chr25:16897606-16897415 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 78, 172 |
| Conread position: | 193-634 |
| Cow position: | chr25:11389004-11389438 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 203 |
| Conread position: | 194-619 |
| Cow position: | chr25:38619792-38619357 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 295 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 194-639 |
| Cow position: | chr25:7020064-7019624 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 113 |
| Conread position: | 195-323 |
| Cow position: | chr25:12342475-12342607 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 68 |
| Conread position: | 199-431 |
| Cow position: | chr25:34498815-34498572 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 74, 46 |
| Conread position: | 199-617 |
| Cow position: | chr25:19384409-19384873 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 134 |
| Conread position: | 207-623 |
| Cow position: | chr25:25850763-25850346 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 208-430 |
| Cow position: | chr25:16087692-16087455 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 209-431 |
| Cow position: | chr25:615449-615681 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 90, 62 |
| Conread position: | 209-634 |
| Cow position: | chr25:10946413-10945982 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 25 |
| Conread position: | 211-562 |
| Cow position: | chr25:18670630-18670297 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 90, 145 |
| Conread position: | 211-605 |
| Cow position: | chr25:22633251-22632848 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 213 |
| Conread position: | 215-619 |
| Cow position: | chr25:36651561-36651947 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 293 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 54, 113 |
| Conread position: | 218-633 |
| Cow position: | chr25:36929791-36929374 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 24 |
| Conread position: | 219-624 |
| Cow position: | chr25:16706605-16706189 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 98 |
| Conread position: | 233-651 |
| Cow position: | chr25:8891343-8891752 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 292 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 41, 129 |
| Conread position: | 238-410 |
| Cow position: | chr25:4696253-4696427 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 29, 121 |
| Conread position: | 251-431 |
| Cow position: | chr25:5657301-5657107 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 137 |
| Conread position: | 255-623 |
| Cow position: | chr25:12506867-12506489 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 187 |
| Conread position: | 298-455 |
| Cow position: | chr25:33543783-33543945 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 48, 146 |
| Conread position: | 298-586 |
| Cow position: | chr25:9602729-9602437 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 37, 63 |
| Conread position: | 299-615 |
| Cow position: | chr25:7056383-7056055 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 124 |
| Conread position: | 301-617 |
| Cow position: | chr25:37233987-37234307 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 318-617 |
| Cow position: | chr25:12342889-12343187 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 18, 90 |
| Conread position: | 347-618 |
| Cow position: | chr25:18646928-18647183 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 207 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 347-619 |
| Cow position: | chr25:5682052-5682312 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 348-623 |
| Cow position: | chr25:12676145-12676416 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 348-623 |
| Cow position: | chr25:13775763-13775494 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 35, 10 |
| Conread position: | 362-499 |
| Cow position: | chr25:10784540-10784401 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 21, 89 |
| Conread position: | 362-618 |
| Cow position: | chr25:21292878-21292631 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 21, 13 |
| Conread position: | 363-611 |
| Cow position: | chr25:30034391-30034153 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 44 |
| Conread position: | 363-619 |
| Cow position: | chr25:12178734-12178980 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 114, 50 |
| Conread position: | 363-619 |
| Cow position: | chr25:38138719-38138467 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 364-601 |
| Cow position: | chr25:16897387-16897150 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 422-640 |
| Cow position: | chr25:26907842-26908046 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 192, 53 |
| Conread position: | 430-597 |
| Cow position: | chr25:23823327-23823159 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 23, 156 |
| Conread position: | 430-618 |
| Cow position: | chr25:18515219-18515028 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 153 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 430-623 |
| Cow position: | chr25:32438940-32439128 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 128, 48 |
| Conread position: | 430-630 |
| Cow position: | chr25:32775771-32775974 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 437-629 |
| Cow position: | chr25:12880655-12880846 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 440-561 |
| Cow position: | chr25:13562726-13562610 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 448-618 |
| Cow position: | chr25:381758-381589 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 450-638 |
| Cow position: | chr25:8841309-8841496 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 36, 20 |
| Conread position: | 456-618 |
| Cow position: | chr25:16533463-16533628 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 457-581 |
| Cow position: | chr25:8457381-8457508 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 470-619 |
| Cow position: | chr25:16472469-16472613 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 9, 103 |
| Conread position: | 481-665 |
| Cow position: | chr25:14283835-14284018 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 78, 15 |
| Conread position: | 488-618 |
| Cow position: | chr25:10784122-10783993 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 519-642 |
| Cow position: | chr25:23211543-23211416 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 95, 0 |
Show alignments to all cow chromosomes.