Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8068J22.3 |
| Conread position: | 183-623 |
| Cow position: | chr28:17290985-17291405 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 300 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 81, 9 |
| Conread position: | 184-379 |
| Cow position: | chr28:22574616-22574818 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 110, 41 |
| Conread position: | 184-463 |
| Cow position: | chr28:19294878-19294585 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 88, 285 |
| Conread position: | 184-619 |
| Cow position: | chr28:4066442-4066852 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 67 |
| Conread position: | 185-619 |
| Cow position: | chr28:31371771-31371336 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 74 |
| Conread position: | 188-431 |
| Cow position: | chr28:34404406-34404165 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 111, 51 |
| Conread position: | 189-359 |
| Cow position: | chr28:26080091-26079915 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 82, 58 |
| Conread position: | 189-392 |
| Cow position: | chr28:14622425-14622209 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 190-691 |
| Cow position: | chr28:11874433-11874936 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 60 |
| Conread position: | 191-504 |
| Cow position: | chr28:33200416-33200729 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 231 |
| Conread position: | 191-613 |
| Cow position: | chr28:4119008-4118605 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 90 |
| Conread position: | 192-391 |
| Cow position: | chr28:16464953-16465157 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 79, 139 |
| Conread position: | 192-431 |
| Cow position: | chr28:9870216-9869966 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 192-431 |
| Cow position: | chr28:10069472-10069220 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 8, 218 |
| Conread position: | 192-618 |
| Cow position: | chr28:23181270-23180855 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 199 |
| Conread position: | 192-619 |
| Cow position: | chr28:23665731-23665317 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 125 |
| Conread position: | 193-424 |
| Cow position: | chr28:24563752-24563993 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 193-580 |
| Cow position: | chr28:33853963-33854331 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 276 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 74, 167 |
| Conread position: | 193-624 |
| Cow position: | chr28:31442923-31443367 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 309 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 76, 281 |
| Conread position: | 202-403 |
| Cow position: | chr28:30574429-30574219 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 65, 188 |
| Conread position: | 208-407 |
| Cow position: | chr28:23167578-23167362 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 218-623 |
| Cow position: | chr28:611733-612149 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 141 |
| Conread position: | 219-622 |
| Cow position: | chr28:30309755-30309338 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 248-558 |
| Cow position: | chr28:20111597-20111900 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 248-619 |
| Cow position: | chr28:24193078-24192707 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 189 |
| Conread position: | 298-431 |
| Cow position: | chr28:28390979-28391119 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 298-618 |
| Cow position: | chr28:6855053-6855379 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 23 |
| Conread position: | 298-623 |
| Cow position: | chr28:25016373-25016063 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 71 |
| Conread position: | 320-619 |
| Cow position: | chr28:4392488-4392767 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 357-619 |
| Cow position: | chr28:34283299-34283559 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 55 |
| Conread position: | 360-619 |
| Cow position: | chr28:26079694-26079457 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 361-619 |
| Cow position: | chr28:23917997-23917746 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 23, 49 |
| Conread position: | 367-600 |
| Cow position: | chr28:4637317-4637079 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 16, 155 |
| Conread position: | 427-613 |
| Cow position: | chr28:21178506-21178685 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 35, 56 |
| Conread position: | 428-618 |
| Cow position: | chr28:9869699-9869504 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 62, 143 |
| Conread position: | 430-568 |
| Cow position: | chr28:10068129-10067988 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 430-624 |
| Cow position: | chr28:8133018-8133203 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 166, 46 |
| Conread position: | 431-618 |
| Cow position: | chr28:31298731-31298913 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 431-635 |
| Cow position: | chr28:31945948-31946147 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 47, 100 |
| Conread position: | 434-619 |
| Cow position: | chr28:2293809-2293993 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 53, 31 |
| Conread position: | 436-611 |
| Cow position: | chr28:23892220-23892046 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 75 |
| Conread position: | 436-713 |
| Cow position: | chr28:7856670-7856386 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 49, 163 |
| Conread position: | 437-619 |
| Cow position: | chr28:23163591-23163775 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 53, 19 |
| Conread position: | 440-619 |
| Cow position: | chr28:4844166-4844343 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 147 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 77, 139 |
| Conread position: | 443-614 |
| Cow position: | chr28:30574215-30574047 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 459-628 |
| Cow position: | chr28:22574860-22575025 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 462-620 |
| Cow position: | chr28:26662639-26662481 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 122, 13 |
| Conread position: | 469-637 |
| Cow position: | chr28:14066590-14066770 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
Show alignments to all cow chromosomes.