Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8068J22.3 |
| Conread position: | 162-415 |
| Cow position: | chr29:4333126-4332874 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 110, 12 |
| Conread position: | 170-460 |
| Cow position: | chr29:16718125-16718429 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 103, 11 |
| Conread position: | 175-619 |
| Cow position: | chr29:13627722-13628187 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 17 |
| Conread position: | 191-374 |
| Cow position: | chr29:18342278-18342473 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 192-358 |
| Cow position: | chr29:25668965-25669139 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 192-412 |
| Cow position: | chr29:34296345-34296576 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 75, 56 |
| Conread position: | 192-431 |
| Cow position: | chr29:23082299-23082047 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 192-490 |
| Cow position: | chr29:12674396-12674708 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 279 |
| Conread position: | 196-431 |
| Cow position: | chr29:14825045-14824797 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 199-396 |
| Cow position: | chr29:29995752-29995953 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 73, 124 |
| Conread position: | 202-623 |
| Cow position: | chr29:16349839-16350264 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 237 |
| Conread position: | 203-392 |
| Cow position: | chr29:18132578-18132378 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 203-618 |
| Cow position: | chr29:6652824-6652396 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 59 |
| Conread position: | 209-562 |
| Cow position: | chr29:25987801-25988170 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 214 |
| Conread position: | 210-633 |
| Cow position: | chr29:26657880-26658290 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 211 |
| Conread position: | 214-431 |
| Cow position: | chr29:24276517-24276288 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 44, 120 |
| Conread position: | 225-633 |
| Cow position: | chr29:12302529-12302961 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 145 |
| Conread position: | 248-430 |
| Cow position: | chr29:24084240-24084432 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 23, 114 |
| Conread position: | 255-431 |
| Cow position: | chr29:33934678-33934498 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 18, 46 |
| Conread position: | 255-623 |
| Cow position: | chr29:17053627-17053272 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 105 |
| Conread position: | 295-619 |
| Cow position: | chr29:28845365-28845032 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 256 |
| Conread position: | 353-705 |
| Cow position: | chr29:41202167-41202526 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 308 |
| Conread position: | 362-619 |
| Cow position: | chr29:31895757-31896014 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 46 |
| Conread position: | 365-614 |
| Cow position: | chr29:30406216-30405966 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 25, 87 |
| Conread position: | 424-623 |
| Cow position: | chr29:18530250-18530060 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 20, 25 |
| Conread position: | 429-612 |
| Cow position: | chr29:12675352-12675540 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 430-619 |
| Cow position: | chr29:15976445-15976635 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 58, 101 |
| Conread position: | 430-631 |
| Cow position: | chr29:29998312-29998510 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 182, 122 |
| Conread position: | 431-618 |
| Cow position: | chr29:11205564-11205379 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 434-619 |
| Cow position: | chr29:14823086-14822897 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 434-619 |
| Cow position: | chr29:25999170-25998992 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 435-619 |
| Cow position: | chr29:39339159-39339338 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 38, 52 |
| Conread position: | 450-698 |
| Cow position: | chr29:25104808-25105057 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 37, 169 |
| Conread position: | 456-601 |
| Cow position: | chr29:39420328-39420464 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 122, 32 |
| Conread position: | 463-619 |
| Cow position: | chr29:2884427-2884581 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 464-594 |
| Cow position: | chr29:34296978-34297111 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 488-623 |
| Cow position: | chr29:21798765-21798626 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 490-617 |
| Cow position: | chr29:24275469-24275343 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 493-620 |
| Cow position: | chr29:25025176-25025046 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 496-672 |
| Cow position: | chr29:1893230-1893045 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 7, 95 |
| Conread position: | 508-619 |
| Cow position: | chr29:43056951-43057061 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
Show alignments to all cow chromosomes.