Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8068J22.3 |
| Conread position: | 135-619 |
| Cow position: | chr4:65166195-65166699 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 149 |
| Conread position: | 182-431 |
| Cow position: | chr4:61681930-61682188 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 85, 8 |
| Conread position: | 183-424 |
| Cow position: | chr4:42603388-42603136 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 179 |
| Conread position: | 184-379 |
| Cow position: | chr4:32440261-32440466 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 184-429 |
| Cow position: | chr4:65337880-65337626 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 9, 217 |
| Conread position: | 184-619 |
| Cow position: | chr4:51864066-51863623 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 18 |
| Conread position: | 185-378 |
| Cow position: | chr4:42670949-42671152 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 187-602 |
| Cow position: | chr4:34440042-34439626 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 46 |
| Conread position: | 187-619 |
| Cow position: | chr4:54437183-54437611 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 53 |
| Conread position: | 190-390 |
| Cow position: | chr4:33046630-33046421 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 190-431 |
| Cow position: | chr4:35207092-35207350 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 81, 214 |
| Conread position: | 191-429 |
| Cow position: | chr4:55540990-55541244 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 196 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 192-392 |
| Cow position: | chr4:26130997-26131206 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 80, 200 |
| Conread position: | 192-397 |
| Cow position: | chr4:42872516-42872728 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 77, 177 |
| Conread position: | 192-404 |
| Cow position: | chr4:23504337-23504551 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 79, 50 |
| Conread position: | 192-428 |
| Cow position: | chr4:28342530-28342775 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 59, 212 |
| Conread position: | 192-431 |
| Cow position: | chr4:1775510-1775756 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 21, 191 |
| Conread position: | 192-431 |
| Cow position: | chr4:45005851-45005606 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 80, 222 |
| Conread position: | 192-473 |
| Cow position: | chr4:47668194-47667924 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 192-574 |
| Cow position: | chr4:21882176-21882545 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 75, 85 |
| Conread position: | 192-611 |
| Cow position: | chr4:57300381-57299965 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 153 |
| Conread position: | 192-617 |
| Cow position: | chr4:63067025-63067462 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 207 |
| Conread position: | 192-623 |
| Cow position: | chr4:33943946-33943531 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 54 |
| Conread position: | 192-636 |
| Cow position: | chr4:30419114-30419554 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 168 |
| Conread position: | 192-639 |
| Cow position: | chr4:24857050-24857501 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 58 |
| Conread position: | 193-431 |
| Cow position: | chr4:10657665-10657908 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 116 |
| Conread position: | 193-608 |
| Cow position: | chr4:65394421-65394004 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 71 |
| Conread position: | 194-410 |
| Cow position: | chr4:39864893-39864665 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 73, 179 |
| Conread position: | 194-636 |
| Cow position: | chr4:36945459-36945894 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 207 |
| Conread position: | 195-429 |
| Cow position: | chr4:23593442-23593685 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 76, 61 |
| Conread position: | 195-431 |
| Cow position: | chr4:502648-502898 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 76, 94 |
| Conread position: | 195-619 |
| Cow position: | chr4:31537492-31537903 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 69 |
| Conread position: | 199-408 |
| Cow position: | chr4:36709710-36709932 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 206-642 |
| Cow position: | chr4:10919696-10919250 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 288 |
| Conread position: | 209-426 |
| Cow position: | chr4:62172134-62172356 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 66, 150 |
| Conread position: | 211-466 |
| Cow position: | chr4:13892824-13893084 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 57 |
| Conread position: | 234-701 |
| Cow position: | chr4:14347357-14346909 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 335 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 37, 135 |
| Conread position: | 238-618 |
| Cow position: | chr4:50836346-50835952 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 194 |
| Conread position: | 239-619 |
| Cow position: | chr4:23540784-23541176 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 254-431 |
| Cow position: | chr4:17376818-17377010 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 106 |
| Conread position: | 254-617 |
| Cow position: | chr4:25862294-25862650 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 105 |
| Conread position: | 254-623 |
| Cow position: | chr4:51611138-51611519 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 39 |
| Conread position: | 255-407 |
| Cow position: | chr4:39842196-39842363 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 255-486 |
| Cow position: | chr4:36157280-36157044 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 19, 161 |
| Conread position: | 256-477 |
| Cow position: | chr4:4106029-4105797 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 15, 105 |
| Conread position: | 264-633 |
| Cow position: | chr4:24862777-24862407 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 73, 26 |
| Conread position: | 298-431 |
| Cow position: | chr4:8406787-8406651 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 298-619 |
| Cow position: | chr4:53353948-53354280 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 212 |
| Conread position: | 309-601 |
| Cow position: | chr4:27403747-27404035 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 310-581 |
| Cow position: | chr4:37819764-37820022 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 177, 9 |
| Conread position: | 310-625 |
| Cow position: | chr4:63005100-63004780 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 113 |
| Conread position: | 322-618 |
| Cow position: | chr4:50823923-50824200 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 61, 102 |
| Conread position: | 347-619 |
| Cow position: | chr4:34559349-34559620 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 55 |
| Conread position: | 347-623 |
| Cow position: | chr4:25702955-25703215 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 348-617 |
| Cow position: | chr4:3123083-3122821 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 87, 12 |
| Conread position: | 349-619 |
| Cow position: | chr4:23734841-23734560 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 131 |
| Conread position: | 362-621 |
| Cow position: | chr4:58505912-58506175 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 362-624 |
| Cow position: | chr4:4372392-4372127 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 104 |
| Conread position: | 398-633 |
| Cow position: | chr4:36710203-36710433 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 92, 35 |
| Conread position: | 421-620 |
| Cow position: | chr4:42873932-42874131 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 176, 62 |
| Conread position: | 423-621 |
| Cow position: | chr4:33044170-33043971 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 48, 105 |
| Conread position: | 423-623 |
| Cow position: | chr4:53822666-53822858 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 425-593 |
| Cow position: | chr4:28796933-28797097 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 133, 90 |
| Conread position: | 430-618 |
| Cow position: | chr4:503230-503414 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 149 |
| Conread position: | 430-619 |
| Cow position: | chr4:5136545-5136353 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 58, 184 |
| Conread position: | 430-619 |
| Cow position: | chr4:61521891-61522077 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 430-621 |
| Cow position: | chr4:44337545-44337733 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 430-624 |
| Cow position: | chr4:68484972-68485159 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 430-629 |
| Cow position: | chr4:66281352-66281151 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 432-618 |
| Cow position: | chr4:41389467-41389279 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 12, 65 |
| Conread position: | 434-619 |
| Cow position: | chr4:27744851-27745034 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 54, 96 |
| Conread position: | 435-690 |
| Cow position: | chr4:60436331-60436073 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 53, 193 |
| Conread position: | 436-658 |
| Cow position: | chr4:65730079-65730302 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 89 |
| Conread position: | 448-622 |
| Cow position: | chr4:44832257-44832427 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 450-619 |
| Cow position: | chr4:21346599-21346427 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 450-619 |
| Cow position: | chr4:26135941-26136116 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 450-693 |
| Cow position: | chr4:6276171-6276404 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 45, 31 |
| Conread position: | 455-645 |
| Cow position: | chr4:35833537-35833727 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 18, 86 |
| Conread position: | 457-613 |
| Cow position: | chr4:68984289-68984440 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 68 |
| Conread position: | 457-619 |
| Cow position: | chr4:48729416-48729257 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 458-619 |
| Cow position: | chr4:22837905-22837747 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 479-582 |
| Cow position: | chr4:62172377-62172480 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 84 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 485-622 |
| Cow position: | chr4:7743408-7743275 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 507-618 |
| Cow position: | chr4:45005579-45005470 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 539-692 |
| Cow position: | chr4:36157021-36156868 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 108, 36 |
Show alignments to all cow chromosomes.