Cow genome map

Conread name: Ss1.1-Pig4-TMW8068J22.3

Conread position: 136-415
Cow position: chr5:67647673-67647381 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 209
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 41, 107

Conread position: 159-431
Cow position: chr5:20956962-20957243 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 215
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 17, 99

Conread position: 170-463
Cow position: chr5:71595045-71595348 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 6, 190

Conread position: 179-431
Cow position: chr5:5227403-5227664 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 186
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 91, 218

Conread position: 182-397
Cow position: chr5:3759023-3759233 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 201, 143

Conread position: 185-503
Cow position: chr5:8240461-8240124 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 140

Conread position: 186-427
Cow position: chr5:47846752-47846509 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 7, 61

Conread position: 190-407
Cow position: chr5:45946103-45945889 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 167
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 146, 77

Conread position: 190-430
Cow position: chr5:30622368-30622110 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 186
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 75, 92

Conread position: 190-618
Cow position: chr5:15834704-15835137 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 304
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 70, 159

Conread position: 191-620
Cow position: chr5:75321707-75322136 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 37

Conread position: 192-326
Cow position: chr5:27474675-27474816 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 192-381
Cow position: chr5:28410148-28410346 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 92, 153

Conread position: 192-431
Cow position: chr5:3801844-3801605 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 172
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 144, 89

Conread position: 192-431
Cow position: chr5:29513707-29513464 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 183
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 107, 127

Conread position: 192-431
Cow position: chr5:29739783-29739531 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 79, 0

Conread position: 192-431
Cow position: chr5:31524521-31524276 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 178
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 104, 79

Conread position: 192-561
Cow position: chr5:2967488-2967853 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 263
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 107, 79

Conread position: 192-618
Cow position: chr5:24609162-24609598 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 39

Conread position: 192-618
Cow position: chr5:25730061-25730477 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 15

Conread position: 192-620
Cow position: chr5:53629973-53629527 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 54

Conread position: 192-621
Cow position: chr5:34904090-34903681 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 297
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 103, 83

Conread position: 192-629
Cow position: chr5:373215-373660 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 20

Conread position: 193-341
Cow position: chr5:9220111-9220263 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 74, 15

Conread position: 195-618
Cow position: chr5:66878682-66879128 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 77

Conread position: 202-334
Cow position: chr5:21949719-21949858 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 202-504
Cow position: chr5:3102952-3103266 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 230
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 67, 130

Conread position: 204-562
Cow position: chr5:65750698-65750334 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 88

Conread position: 205-395
Cow position: chr5:26984618-26984431 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 62, 100

Conread position: 205-639
Cow position: chr5:12177538-12177990 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 24

Conread position: 208-431
Cow position: chr5:32187251-32187022 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 165
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 65, 28

Conread position: 208-617
Cow position: chr5:10915368-10914951 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 232

Conread position: 209-407
Cow position: chr5:21782740-21782951 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 167
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 63, 171

Conread position: 209-428
Cow position: chr5:35448822-35448591 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 177
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 62, 195

Conread position: 210-549
Cow position: chr5:3007902-3007568 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 239
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 114, 129

Conread position: 210-619
Cow position: chr5:38398029-38398442 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 194

Conread position: 210-619
Cow position: chr5:58371198-58370803 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 287
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 67, 121

Conread position: 211-623
Cow position: chr5:35612331-35612749 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 224

Conread position: 212-623
Cow position: chr5:12310500-12310112 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 293
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 89, 35

Conread position: 219-379
Cow position: chr5:47761366-47761194 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 223-637
Cow position: chr5:65093236-65092808 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 238

Conread position: 230-517
Cow position: chr5:36808255-36808548 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 224
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 69, 139

Conread position: 239-431
Cow position: chr5:71726209-71726002 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 32, 0

Conread position: 255-431
Cow position: chr5:52478793-52478975 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 13, 92

Conread position: 255-623
Cow position: chr5:28860618-28860239 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 97

Conread position: 257-562
Cow position: chr5:76079384-76079694 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 68

Conread position: 258-620
Cow position: chr5:7925921-7925551 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 74

Conread position: 298-618
Cow position: chr5:2179904-2179575 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 300-619
Cow position: chr5:26990618-26990927 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 45

Conread position: 300-622
Cow position: chr5:55787589-55787271 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 127

Conread position: 325-576
Cow position: chr5:26366032-26365776 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 195
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 11, 178

Conread position: 347-623
Cow position: chr5:39793434-39793700 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 211
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 13, 151

Conread position: 365-619
Cow position: chr5:59245166-59244925 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 65, 117

Conread position: 368-620
Cow position: chr5:28410376-28410622 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 197
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 119, 29

Conread position: 405-689
Cow position: chr5:31523968-31523678 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 9, 23

Conread position: 413-617
Cow position: chr5:54889233-54889027 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 7, 47

Conread position: 413-619
Cow position: chr5:40554237-40554029 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 14

Conread position: 421-606
Cow position: chr5:49135578-49135392 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 421-619
Cow position: chr5:28049044-28049240 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 35, 128

Conread position: 423-690
Cow position: chr5:36722585-36722840 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 194
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 64, 20

Conread position: 430-617
Cow position: chr5:42222934-42223117 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 58, 72

Conread position: 430-618
Cow position: chr5:5229612-5229803 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 60, 0

Conread position: 430-618
Cow position: chr5:55270448-55270258 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 150
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 57, 7

Conread position: 430-619
Cow position: chr5:27476730-27476909 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 50, 69

Conread position: 430-620
Cow position: chr5:14306588-14306777 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 158
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 60, 89

Conread position: 430-622
Cow position: chr5:48396690-48396499 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 23

Conread position: 430-658
Cow position: chr5:47383928-47384158 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 175
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 23, 124

Conread position: 431-624
Cow position: chr5:65604223-65604420 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 57, 95

Conread position: 432-584
Cow position: chr5:3759231-3759384 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 56, 13

Conread position: 432-620
Cow position: chr5:50959996-50960186 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 118

Conread position: 433-605
Cow position: chr5:41965915-41966085 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 104, 0

Conread position: 434-593
Cow position: chr5:29511221-29511055 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 56, 0

Conread position: 434-618
Cow position: chr5:6598473-6598648 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 134, 44

Conread position: 434-619
Cow position: chr5:3460064-3459887 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 434-619
Cow position: chr5:47758582-47758398 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 148
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 125, 45

Conread position: 434-685
Cow position: chr5:29057478-29057233 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 436-623
Cow position: chr5:1709899-1709713 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 54, 7

Conread position: 437-620
Cow position: chr5:71725933-71725744 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 32, 11

Conread position: 438-618
Cow position: chr5:35085441-35085622 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 144
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 50, 69

Conread position: 440-594
Cow position: chr5:5397724-5397574 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 119, 41

Conread position: 448-619
Cow position: chr5:3485461-3485633 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 42, 83

Conread position: 450-619
Cow position: chr5:33060439-33060604 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 137
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 77, 0

Conread position: 452-613
Cow position: chr5:2716443-2716609 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 19, 128

Conread position: 456-618
Cow position: chr5:10042845-10042684 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 22, 11

Conread position: 456-619
Cow position: chr5:71736292-71736136 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 457-619
Cow position: chr5:52481238-52481402 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 92

Conread position: 462-619
Cow position: chr5:68845267-68845110 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 20, 47

Conread position: 470-622
Cow position: chr5:71055077-71054929 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 62, 0

Conread position: 493-619
Cow position: chr5:39437475-39437348 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 80, 0

Conread position: 493-623
Cow position: chr5:28814080-28814210 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 493-623
Cow position: chr5:32134010-32133881 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 64, 0

Conread position: 493-635
Cow position: chr5:47973159-47973301 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 106
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 87, 121

Conread position: 528-631
Cow position: chr5:45487716-45487613 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 89
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 540-682
Cow position: chr5:22771533-22771395 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 106, 0

Show alignments to all cow chromosomes.