Cow genome map

Conread name: Ss1.1-Pig4-TMW8068J22.3

Conread position: 159-431
Cow position: chr6:7029131-7029408 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 192
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 108, 23

Conread position: 171-431
Cow position: chr6:58005858-58006111 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 100, 60

Conread position: 176-622
Cow position: chr6:12850128-12849669 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 373

Conread position: 177-431
Cow position: chr6:1840443-1840712 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 196
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 92, 0

Conread position: 182-429
Cow position: chr6:11755819-11755562 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 179
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 7, 11

Conread position: 183-431
Cow position: chr6:9416199-9416461 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 197
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 10, 89

Conread position: 184-431
Cow position: chr6:662110-661849 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 183
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 88, 33

Conread position: 184-620
Cow position: chr6:49494013-49494444 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 305
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 83, 252

Conread position: 185-447
Cow position: chr6:5561604-5561328 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 196
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 41, 268

Conread position: 189-432
Cow position: chr6:46657350-46657604 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 194
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 61, 25

Conread position: 189-618
Cow position: chr6:35273566-35274008 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 173

Conread position: 190-630
Cow position: chr6:8140141-8140591 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 233

Conread position: 191-407
Cow position: chr6:51082807-51082579 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 170
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 80, 188

Conread position: 191-589
Cow position: chr6:28181828-28182227 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 246

Conread position: 191-622
Cow position: chr6:3559149-3559553 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 311
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 54, 173

Conread position: 192-381
Cow position: chr6:51027929-51028123 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 75, 160

Conread position: 192-389
Cow position: chr6:57498336-57498546 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 78, 0

Conread position: 192-392
Cow position: chr6:5519879-5520084 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 71, 85

Conread position: 192-415
Cow position: chr6:1437846-1438071 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 156
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 81, 151

Conread position: 192-429
Cow position: chr6:8007391-8007140 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 79, 61

Conread position: 192-430
Cow position: chr6:14634811-14634564 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 186
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 132, 77

Conread position: 192-431
Cow position: chr6:44703692-44703947 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 177
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 75, 23

Conread position: 192-618
Cow position: chr6:1525708-1525281 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 60

Conread position: 192-619
Cow position: chr6:53392066-53392495 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 245

Conread position: 192-623
Cow position: chr6:35236190-35235745 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 300

Conread position: 192-639
Cow position: chr6:12925225-12924782 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 231

Conread position: 193-431
Cow position: chr6:5847478-5847713 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 177
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 143, 85

Conread position: 193-621
Cow position: chr6:16214402-16214795 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 301
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 143, 17

Conread position: 194-556
Cow position: chr6:19436882-19436519 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 265
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 80, 114

Conread position: 203-619
Cow position: chr6:138287-137872 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 52

Conread position: 206-619
Cow position: chr6:49221843-49221427 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 155

Conread position: 208-591
Cow position: chr6:53808428-53808053 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 268
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 65, 118

Conread position: 208-602
Cow position: chr6:52922076-52922455 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 281
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 63, 130

Conread position: 209-619
Cow position: chr6:50875744-50875333 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 15

Conread position: 210-431
Cow position: chr6:6382671-6382436 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 179
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 61, 0

Conread position: 210-431
Cow position: chr6:9821459-9821229 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 55, 191

Conread position: 211-619
Cow position: chr6:68079638-68080054 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 288
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 88, 21

Conread position: 215-431
Cow position: chr6:62096375-62096154 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 56, 67

Conread position: 218-431
Cow position: chr6:38791010-38791234 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 178
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 53, 143

Conread position: 244-431
Cow position: chr6:38959786-38959590 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 80, 164

Conread position: 253-608
Cow position: chr6:17026815-17026464 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 250
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 76

Conread position: 255-431
Cow position: chr6:6469153-6469340 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 50, 69

Conread position: 268-420
Cow position: chr6:54051075-54051225 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 68, 113

Conread position: 293-619
Cow position: chr6:43676997-43676690 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 239
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 7, 70

Conread position: 298-431
Cow position: chr6:57370470-57370330 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 298-465
Cow position: chr6:8367341-8367516 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 38, 0

Conread position: 303-619
Cow position: chr6:50979334-50979635 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 29

Conread position: 316-450
Cow position: chr6:34575513-34575372 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 20, 82

Conread position: 347-619
Cow position: chr6:38274976-38275242 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 86

Conread position: 362-619
Cow position: chr6:42749521-42749774 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 21, 8

Conread position: 362-619
Cow position: chr6:57339163-57339411 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 193
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 21, 71

Conread position: 365-618
Cow position: chr6:50800098-50799836 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 216

Conread position: 373-614
Cow position: chr6:68269799-68270046 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 63, 0

Conread position: 385-595
Cow position: chr6:49168616-49168406 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 161
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 51, 97

Conread position: 387-623
Cow position: chr6:58969785-58969544 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 11, 0

Conread position: 399-632
Cow position: chr6:32287917-32288146 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 178
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 127, 25

Conread position: 417-617
Cow position: chr6:49330493-49330695 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 70, 189

Conread position: 418-616
Cow position: chr6:29110896-29110701 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 14, 0

Conread position: 424-617
Cow position: chr6:60176699-60176895 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 153
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 60, 100

Conread position: 429-620
Cow position: chr6:46660801-46660990 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 150
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 24, 0

Conread position: 429-623
Cow position: chr6:11754319-11754129 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 46, 0

Conread position: 430-580
Cow position: chr6:37361903-37362055 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 58, 109

Conread position: 430-611
Cow position: chr6:9789453-9789633 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 149
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 60, 118

Conread position: 430-619
Cow position: chr6:46886166-46885973 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 150
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 58, 0

Conread position: 430-621
Cow position: chr6:7126205-7126395 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 48, 69

Conread position: 430-623
Cow position: chr6:7202691-7202503 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 158
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 141, 34

Conread position: 430-623
Cow position: chr6:13284677-13284485 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 153
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 51, 57

Conread position: 431-617
Cow position: chr6:5849417-5849606 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 151
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 54, 0

Conread position: 431-622
Cow position: chr6:57368175-57367981 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 159
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 434-618
Cow position: chr6:68278157-68278343 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 148
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 48, 86

Conread position: 434-619
Cow position: chr6:51030900-51031085 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 151
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 54, 97

Conread position: 434-622
Cow position: chr6:62095825-62095639 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 147
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 56, 15

Conread position: 434-630
Cow position: chr6:16751999-16752194 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 157
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 189, 93

Conread position: 435-619
Cow position: chr6:1042433-1042626 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 148
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 43, 0

Conread position: 435-674
Cow position: chr6:14632431-14632192 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 171
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 55, 131

Conread position: 437-623
Cow position: chr6:6520753-6520941 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 156
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 48, 83

Conread position: 443-619
Cow position: chr6:34575095-34574926 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 42, 92

Conread position: 448-617
Cow position: chr6:49349598-49349770 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 139
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 35, 0

Conread position: 450-623
Cow position: chr6:6480434-6480611 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 0

Conread position: 453-618
Cow position: chr6:53229682-53229847 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 37, 135

Conread position: 457-611
Cow position: chr6:32536855-32536703 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 125
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 36, 0

Conread position: 457-637
Cow position: chr6:67789618-67789438 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 162, 21

Conread position: 462-623
Cow position: chr6:5561085-5560921 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 23, 0

Conread position: 470-617
Cow position: chr6:6660318-6660172 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 483-619
Cow position: chr6:8367667-8367800 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 483-623
Cow position: chr6:44706928-44707067 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 13, 0

Conread position: 485-619
Cow position: chr6:38959151-38959016 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 17, 49

Conread position: 492-618
Cow position: chr6:60626709-60626835 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 492-684
Cow position: chr6:48336145-48336340 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 124, 58

Conread position: 493-618
Cow position: chr6:57541737-57541862 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 106
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 493-619
Cow position: chr6:48662504-48662378 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 493-665
Cow position: chr6:8007125-8006953 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 122, 44

Conread position: 499-641
Cow position: chr6:1840731-1840869 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 501-623
Cow position: chr6:12498157-12498039 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 100, 0

Show alignments to all cow chromosomes.