Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8068J22.3 |
| Conread position: | 178-431 |
| Cow position: | chr7:61696223-61695961 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 91, 58 |
| Conread position: | 183-423 |
| Cow position: | chr7:51916191-51915946 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 88, 173 |
| Conread position: | 183-619 |
| Cow position: | chr7:36977147-36977576 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 35 |
| Conread position: | 187-407 |
| Cow position: | chr7:43960127-43959894 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 80, 21 |
| Conread position: | 190-358 |
| Cow position: | chr7:49240978-49240802 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 77, 99 |
| Conread position: | 190-394 |
| Cow position: | chr7:62598797-62598584 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 81, 63 |
| Conread position: | 190-407 |
| Cow position: | chr7:3316978-3316764 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 115 |
| Conread position: | 190-431 |
| Cow position: | chr7:53495734-53495983 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 84, 27 |
| Conread position: | 190-458 |
| Cow position: | chr7:63607804-63607529 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 81, 176 |
| Conread position: | 190-638 |
| Cow position: | chr7:53547047-53546589 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 255 |
| Conread position: | 191-562 |
| Cow position: | chr7:6435835-6436199 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 80, 179 |
| Conread position: | 192-431 |
| Cow position: | chr7:686036-685792 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 75, 155 |
| Conread position: | 192-460 |
| Cow position: | chr7:34664084-34663820 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 80, 166 |
| Conread position: | 192-486 |
| Cow position: | chr7:24961448-24961155 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 153 |
| Conread position: | 192-618 |
| Cow position: | chr7:66602041-66601631 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 303 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 107, 21 |
| Conread position: | 193-375 |
| Cow position: | chr7:11511553-11511740 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 78, 96 |
| Conread position: | 194-381 |
| Cow position: | chr7:11345816-11345622 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 166 |
| Conread position: | 194-392 |
| Cow position: | chr7:51402355-51402559 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 79, 147 |
| Conread position: | 202-396 |
| Cow position: | chr7:3419348-3419148 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 68, 101 |
| Conread position: | 204-431 |
| Cow position: | chr7:61151507-61151276 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 70, 80 |
| Conread position: | 204-617 |
| Cow position: | chr7:19398444-19398036 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 237 |
| Conread position: | 208-392 |
| Cow position: | chr7:32548539-32548733 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 87, 65 |
| Conread position: | 208-532 |
| Cow position: | chr7:21224290-21223968 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 277 |
| Conread position: | 210-695 |
| Cow position: | chr7:25813338-25813816 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 148 |
| Conread position: | 217-637 |
| Cow position: | chr7:64840414-64840012 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 229-424 |
| Cow position: | chr7:56686770-56686563 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 65, 43 |
| Conread position: | 237-623 |
| Cow position: | chr7:17218159-17217783 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 80 |
| Conread position: | 238-431 |
| Cow position: | chr7:45757226-45757441 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 239-431 |
| Cow position: | chr7:12444229-12444022 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 254-595 |
| Cow position: | chr7:11075425-11075067 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 270-623 |
| Cow position: | chr7:58544374-58544733 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 88 |
| Conread position: | 303-609 |
| Cow position: | chr7:44290503-44290809 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 235 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 24, 123 |
| Conread position: | 322-526 |
| Cow position: | chr7:6276785-6276578 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 100 |
| Conread position: | 329-619 |
| Cow position: | chr7:9117206-9116914 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 7, 107 |
| Conread position: | 339-635 |
| Cow position: | chr7:51812575-51812297 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 347-562 |
| Cow position: | chr7:17919619-17919407 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 351-633 |
| Cow position: | chr7:42358904-42359175 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 5, 109 |
| Conread position: | 362-581 |
| Cow position: | chr7:18408052-18408263 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 121, 21 |
| Conread position: | 362-581 |
| Cow position: | chr7:18421880-18421669 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 121, 21 |
| Conread position: | 366-635 |
| Cow position: | chr7:7890768-7891026 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 15, 56 |
| Conread position: | 369-607 |
| Cow position: | chr7:17089937-17089699 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 14, 133 |
| Conread position: | 370-611 |
| Cow position: | chr7:15085671-15085437 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 204, 13 |
| Conread position: | 373-681 |
| Cow position: | chr7:49240550-49240241 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 259 |
| Conread position: | 420-627 |
| Cow position: | chr7:54741390-54741599 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 421-619 |
| Cow position: | chr7:56683920-56683726 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 421-622 |
| Cow position: | chr7:59572345-59572151 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 424-615 |
| Cow position: | chr7:26319060-26318869 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 137, 57 |
| Conread position: | 430-606 |
| Cow position: | chr7:67484877-67484699 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 430-615 |
| Cow position: | chr7:54512520-54512700 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 62, 13 |
| Conread position: | 430-620 |
| Cow position: | chr7:51912847-51912664 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 430-621 |
| Cow position: | chr7:63983991-63984184 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 60, 32 |
| Conread position: | 430-627 |
| Cow position: | chr7:11512053-11512253 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 431-682 |
| Cow position: | chr7:56920214-56920466 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 32, 188 |
| Conread position: | 432-619 |
| Cow position: | chr7:54191778-54191966 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 156 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 56, 67 |
| Conread position: | 433-618 |
| Cow position: | chr7:51406195-51406384 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 154 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 434-611 |
| Cow position: | chr7:24973251-24973434 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 125, 48 |
| Conread position: | 434-617 |
| Cow position: | chr7:27241295-27241110 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 48, 10 |
| Conread position: | 434-619 |
| Cow position: | chr7:3332739-3332552 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 434-619 |
| Cow position: | chr7:47833043-47833229 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 154 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 48, 97 |
| Conread position: | 434-652 |
| Cow position: | chr7:65989102-65988889 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 97 |
| Conread position: | 434-690 |
| Cow position: | chr7:55029555-55029810 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 180, 55 |
| Conread position: | 437-618 |
| Cow position: | chr7:24469075-24468893 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 49, 98 |
| Conread position: | 437-619 |
| Cow position: | chr7:68357474-68357295 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 70 |
| Conread position: | 437-672 |
| Cow position: | chr7:5933190-5933428 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 50, 94 |
| Conread position: | 444-618 |
| Cow position: | chr7:48724879-48725052 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 37, 136 |
| Conread position: | 445-619 |
| Cow position: | chr7:45759779-45759955 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 45, 112 |
| Conread position: | 448-619 |
| Cow position: | chr7:63607020-63606842 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 450-620 |
| Cow position: | chr7:35906179-35906012 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 52 |
| Conread position: | 462-623 |
| Cow position: | chr7:34663586-34663419 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 463-617 |
| Cow position: | chr7:53448117-53448275 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 483-618 |
| Cow position: | chr7:22805755-22805887 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 483-619 |
| Cow position: | chr7:56089385-56089248 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 125, 88 |
| Conread position: | 493-652 |
| Cow position: | chr7:57096989-57097143 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 153, 30 |
| Conread position: | 499-619 |
| Cow position: | chr7:53496004-53496122 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
Show alignments to all cow chromosomes.