Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8068J22.3 |
| Conread position: | 139-431 |
| Cow position: | chr8:27322677-27322967 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 41, 30 |
| Conread position: | 176-430 |
| Cow position: | chr8:22396382-22396119 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 88, 107 |
| Conread position: | 181-350 |
| Cow position: | chr8:51161271-51161445 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 184-431 |
| Cow position: | chr8:20924384-20924122 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 9, 85 |
| Conread position: | 184-431 |
| Cow position: | chr8:59148273-59148531 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 83, 55 |
| Conread position: | 185-564 |
| Cow position: | chr8:26693374-26693774 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 46 |
| Conread position: | 186-346 |
| Cow position: | chr8:8017360-8017193 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 186-376 |
| Cow position: | chr8:53731022-53730821 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 85, 194 |
| Conread position: | 187-430 |
| Cow position: | chr8:4984082-4984334 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 87, 17 |
| Conread position: | 189-431 |
| Cow position: | chr8:35287970-35287717 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 84, 247 |
| Conread position: | 189-431 |
| Cow position: | chr8:48418587-48418833 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 107, 36 |
| Conread position: | 189-441 |
| Cow position: | chr8:22997227-22996972 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 82, 45 |
| Conread position: | 189-623 |
| Cow position: | chr8:22618844-22619264 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 61 |
| Conread position: | 190-380 |
| Cow position: | chr8:12067713-12067914 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 191-380 |
| Cow position: | chr8:1975852-1975655 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 191-392 |
| Cow position: | chr8:19111454-19111660 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 76, 140 |
| Conread position: | 192-355 |
| Cow position: | chr8:19512730-19512898 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 71, 166 |
| Conread position: | 192-395 |
| Cow position: | chr8:5961017-5961234 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 192-407 |
| Cow position: | chr8:30428075-30428295 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 192-422 |
| Cow position: | chr8:43166920-43166679 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 75, 186 |
| Conread position: | 192-431 |
| Cow position: | chr8:8682120-8682364 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 85, 132 |
| Conread position: | 192-431 |
| Cow position: | chr8:24206666-24206912 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 75, 10 |
| Conread position: | 192-431 |
| Cow position: | chr8:24790901-24790653 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 83, 166 |
| Conread position: | 192-575 |
| Cow position: | chr8:20348337-20348733 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 37 |
| Conread position: | 192-613 |
| Cow position: | chr8:57041230-57040808 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 169 |
| Conread position: | 192-619 |
| Cow position: | chr8:52085357-52084952 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 43, 7 |
| Conread position: | 192-623 |
| Cow position: | chr8:18793085-18793497 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 292 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 82, 118 |
| Conread position: | 193-622 |
| Cow position: | chr8:22941185-22941630 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 176 |
| Conread position: | 193-677 |
| Cow position: | chr8:50922875-50922376 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 169 |
| Conread position: | 195-617 |
| Cow position: | chr8:23393299-23392880 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 240 |
| Conread position: | 197-431 |
| Cow position: | chr8:19153292-19153048 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 79, 208 |
| Conread position: | 199-431 |
| Cow position: | chr8:45457542-45457298 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 72, 212 |
| Conread position: | 199-690 |
| Cow position: | chr8:19616600-19617082 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 205 |
| Conread position: | 202-705 |
| Cow position: | chr8:15640562-15641067 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 109 |
| Conread position: | 210-431 |
| Cow position: | chr8:13244239-13244008 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 214-406 |
| Cow position: | chr8:29009684-29009480 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 243-618 |
| Cow position: | chr8:47427649-47428032 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 11 |
| Conread position: | 251-618 |
| Cow position: | chr8:20808111-20807741 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 185 |
| Conread position: | 255-431 |
| Cow position: | chr8:4291283-4291101 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 16 |
| Conread position: | 255-431 |
| Cow position: | chr8:17215810-17215616 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 255-431 |
| Cow position: | chr8:18897374-18897560 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 16, 105 |
| Conread position: | 276-617 |
| Cow position: | chr8:35150606-35150265 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 76 |
| Conread position: | 301-471 |
| Cow position: | chr8:31267838-31268010 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 158 |
| Conread position: | 347-618 |
| Cow position: | chr8:29957236-29957496 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 12, 85 |
| Conread position: | 362-619 |
| Cow position: | chr8:38071143-38070894 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 363-618 |
| Cow position: | chr8:12067959-12068207 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 365-618 |
| Cow position: | chr8:815836-815585 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 62 |
| Conread position: | 370-595 |
| Cow position: | chr8:52197201-52196982 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 117, 58 |
| Conread position: | 370-619 |
| Cow position: | chr8:1975640-1975397 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 386-639 |
| Cow position: | chr8:51161510-51161767 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 46, 21 |
| Conread position: | 411-618 |
| Cow position: | chr8:18738348-18738142 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 415-619 |
| Cow position: | chr8:13238891-13238688 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 424-619 |
| Cow position: | chr8:51500851-51500656 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 155 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 151, 134 |
| Conread position: | 429-681 |
| Cow position: | chr8:29389376-29389138 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 430-574 |
| Cow position: | chr8:45456976-45456829 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 67 |
| Conread position: | 430-575 |
| Cow position: | chr8:8686822-8686968 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 60, 123 |
| Conread position: | 430-618 |
| Cow position: | chr8:18899443-18899630 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 151 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 430-619 |
| Cow position: | chr8:12163760-12163948 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 60, 140 |
| Conread position: | 430-619 |
| Cow position: | chr8:22994982-22994788 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 56, 167 |
| Conread position: | 430-619 |
| Cow position: | chr8:42871507-42871700 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 157 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 430-620 |
| Cow position: | chr8:31717703-31717526 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 48, 103 |
| Conread position: | 430-624 |
| Cow position: | chr8:48421634-48421816 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 430-625 |
| Cow position: | chr8:4288974-4288769 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 32, 118 |
| Conread position: | 430-688 |
| Cow position: | chr8:5810144-5810400 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 57, 108 |
| Conread position: | 432-623 |
| Cow position: | chr8:44288097-44288282 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 433-619 |
| Cow position: | chr8:42700853-42700664 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 45, 79 |
| Conread position: | 434-619 |
| Cow position: | chr8:8012217-8012020 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 434-620 |
| Cow position: | chr8:17213634-17213449 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 56, 79 |
| Conread position: | 442-622 |
| Cow position: | chr8:24509908-24510087 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 66 |
| Conread position: | 443-619 |
| Cow position: | chr8:41210302-41210123 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 149 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 447-703 |
| Cow position: | chr8:22394196-22393945 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 43, 164 |
| Conread position: | 449-619 |
| Cow position: | chr8:51589175-51589003 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 41, 135 |
| Conread position: | 450-622 |
| Cow position: | chr8:24209405-24209580 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 457-623 |
| Cow position: | chr8:41387511-41387671 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 53 |
| Conread position: | 464-621 |
| Cow position: | chr8:43831434-43831276 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 466-623 |
| Cow position: | chr8:60344449-60344294 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 108, 15 |
| Conread position: | 470-662 |
| Cow position: | chr8:59153690-59153873 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 10, 57 |
| Conread position: | 483-617 |
| Cow position: | chr8:24788462-24788329 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 490-617 |
| Cow position: | chr8:14275603-14275478 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 493-623 |
| Cow position: | chr8:29810726-29810595 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 66, 39 |
| Conread position: | 493-630 |
| Cow position: | chr8:35287704-35287565 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 121, 84 |
Show alignments to all cow chromosomes.