Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8068J22.3 |
| Conread position: | 168-407 |
| Cow position: | chr9:8752640-8752890 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 101, 192 |
| Conread position: | 175-431 |
| Cow position: | chr9:37409894-37409626 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 18, 240 |
| Conread position: | 184-407 |
| Cow position: | chr9:29008478-29008237 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 184-561 |
| Cow position: | chr9:45292141-45291746 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 266 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 32, 154 |
| Conread position: | 184-620 |
| Cow position: | chr9:44688497-44688940 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 178 |
| Conread position: | 188-431 |
| Cow position: | chr9:30056628-30056891 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 84, 182 |
| Conread position: | 188-644 |
| Cow position: | chr9:23866675-23867155 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 147 |
| Conread position: | 189-376 |
| Cow position: | chr9:19502652-19502848 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 74, 141 |
| Conread position: | 189-407 |
| Cow position: | chr9:27724809-27725035 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 189-430 |
| Cow position: | chr9:8331-8083 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 66, 217 |
| Conread position: | 189-619 |
| Cow position: | chr9:45375774-45376237 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 190-612 |
| Cow position: | chr9:10301062-10300638 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 33 |
| Conread position: | 191-411 |
| Cow position: | chr9:14862839-14863066 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 191-431 |
| Cow position: | chr9:8635682-8635428 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 82, 231 |
| Conread position: | 192-381 |
| Cow position: | chr9:7777913-7778106 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 75, 19 |
| Conread position: | 192-431 |
| Cow position: | chr9:10577646-10577891 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 80, 58 |
| Conread position: | 192-454 |
| Cow position: | chr9:43325531-43325255 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 80, 252 |
| Conread position: | 192-565 |
| Cow position: | chr9:29001442-29001840 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 363 |
| Conread position: | 192-619 |
| Cow position: | chr9:24111687-24112119 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 117 |
| Conread position: | 192-623 |
| Cow position: | chr9:12851370-12851791 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 200 |
| Conread position: | 192-633 |
| Cow position: | chr9:33247942-33247499 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 207 |
| Conread position: | 193-405 |
| Cow position: | chr9:38433038-38433270 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 193-409 |
| Cow position: | chr9:49270468-49270244 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 76, 218 |
| Conread position: | 193-459 |
| Cow position: | chr9:53113073-53112794 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 78, 252 |
| Conread position: | 193-524 |
| Cow position: | chr9:1498727-1499078 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 332 |
| Conread position: | 193-619 |
| Cow position: | chr9:38755985-38755563 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 248 |
| Conread position: | 193-639 |
| Cow position: | chr9:26521079-26520632 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 89 |
| Conread position: | 194-407 |
| Cow position: | chr9:33278929-33278709 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 77, 148 |
| Conread position: | 194-658 |
| Cow position: | chr9:37256733-37257201 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 159 |
| Conread position: | 195-407 |
| Cow position: | chr9:32953567-32953793 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 195-618 |
| Cow position: | chr9:35843820-35844251 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 165 |
| Conread position: | 203-572 |
| Cow position: | chr9:10787632-10787976 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 70, 22 |
| Conread position: | 211-380 |
| Cow position: | chr9:36721455-36721636 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 225-431 |
| Cow position: | chr9:52422548-52422762 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 256-431 |
| Cow position: | chr9:37516193-37516375 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 13, 112 |
| Conread position: | 272-619 |
| Cow position: | chr9:30866413-30866063 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 67 |
| Conread position: | 277-628 |
| Cow position: | chr9:43482380-43482035 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 321-691 |
| Cow position: | chr9:26143112-26143475 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 41 |
| Conread position: | 347-619 |
| Cow position: | chr9:8040361-8040088 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 353-619 |
| Cow position: | chr9:16488088-16488335 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 127, 39 |
| Conread position: | 358-671 |
| Cow position: | chr9:48128808-48128505 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 62 |
| Conread position: | 362-624 |
| Cow position: | chr9:24927674-24927931 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 19, 96 |
| Conread position: | 365-622 |
| Cow position: | chr9:34086021-34086272 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 113 |
| Conread position: | 367-619 |
| Cow position: | chr9:21380301-21380555 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 376-619 |
| Cow position: | chr9:31629572-31629331 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 23, 216 |
| Conread position: | 421-618 |
| Cow position: | chr9:3089906-3089718 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 424-619 |
| Cow position: | chr9:18118994-18118796 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 430-573 |
| Cow position: | chr9:26037087-26036945 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 430-576 |
| Cow position: | chr9:26584005-26584154 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 430-582 |
| Cow position: | chr9:18724053-18723900 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 100 |
| Conread position: | 430-618 |
| Cow position: | chr9:52423075-52423264 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 48, 147 |
| Conread position: | 430-620 |
| Cow position: | chr9:55623921-55624111 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 150 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 430-624 |
| Cow position: | chr9:4514352-4514548 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 58, 163 |
| Conread position: | 431-621 |
| Cow position: | chr9:30768159-30767970 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 50, 100 |
| Conread position: | 432-616 |
| Cow position: | chr9:21496869-21496690 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 46, 93 |
| Conread position: | 434-564 |
| Cow position: | chr9:59866218-59866085 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 434-618 |
| Cow position: | chr9:8633406-8633220 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 54, 139 |
| Conread position: | 434-618 |
| Cow position: | chr9:10734574-10734387 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 434-619 |
| Cow position: | chr9:7077152-7076969 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 434-689 |
| Cow position: | chr9:37406202-37405948 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 51, 36 |
| Conread position: | 435-633 |
| Cow position: | chr9:51064455-51064247 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 436-623 |
| Cow position: | chr9:51578135-51578318 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 437-618 |
| Cow position: | chr9:60792181-60792365 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 438-619 |
| Cow position: | chr9:21502162-21502337 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 50, 92 |
| Conread position: | 442-619 |
| Cow position: | chr9:35599162-35599333 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 443-624 |
| Cow position: | chr9:1026510-1026693 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 5 |
| Conread position: | 448-629 |
| Cow position: | chr9:12254634-12254449 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 134 |
| Conread position: | 448-690 |
| Cow position: | chr9:39649909-39649674 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 455-700 |
| Cow position: | chr9:30059209-30059454 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 201, 29 |
| Conread position: | 461-620 |
| Cow position: | chr9:43325026-43324874 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 464-626 |
| Cow position: | chr9:6316-6148 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 142 |
| Conread position: | 472-619 |
| Cow position: | chr9:49270244-49270096 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 481-621 |
| Cow position: | chr9:50381704-50381566 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 483-623 |
| Cow position: | chr9:48792119-48791980 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 489-619 |
| Cow position: | chr9:53112565-53112435 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 493-619 |
| Cow position: | chr9:7778181-7778307 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.