Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8068J22.3 |
| Conread position: | 102-619 |
| Cow position: | chrX:21621474-21621996 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 84 |
| Conread position: | 180-401 |
| Cow position: | chrX:40472755-40472992 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 185-431 |
| Cow position: | chrX:28128243-28127982 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 185-619 |
| Cow position: | chrX:20874947-20875383 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 49 |
| Conread position: | 187-427 |
| Cow position: | chrX:22890957-22891201 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 80, 34 |
| Conread position: | 189-394 |
| Cow position: | chrX:37407303-37407515 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 78, 15 |
| Conread position: | 189-430 |
| Cow position: | chrX:11692123-11691871 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 76, 209 |
| Conread position: | 190-429 |
| Cow position: | chrX:3524335-3524088 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 105, 78 |
| Conread position: | 190-588 |
| Cow position: | chrX:1177190-1176771 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 280 |
| Conread position: | 190-611 |
| Cow position: | chrX:16885791-16885369 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 18 |
| Conread position: | 191-431 |
| Cow position: | chrX:7168446-7168198 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 66, 81 |
| Conread position: | 192-375 |
| Cow position: | chrX:40552933-40552745 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 82, 44 |
| Conread position: | 192-406 |
| Cow position: | chrX:25305963-25306186 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 192-424 |
| Cow position: | chrX:39353167-39353407 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 83, 168 |
| Conread position: | 192-588 |
| Cow position: | chrX:42265540-42265919 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 276 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 144, 87 |
| Conread position: | 192-617 |
| Cow position: | chrX:36067022-36067462 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 248 |
| Conread position: | 192-619 |
| Cow position: | chrX:4265317-4264881 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 253 |
| Conread position: | 192-623 |
| Cow position: | chrX:4199228-4198813 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 103 |
| Conread position: | 192-720 |
| Cow position: | chrX:13036015-13035495 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 190 |
| Conread position: | 193-381 |
| Cow position: | chrX:42293194-42293386 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 74, 138 |
| Conread position: | 199-431 |
| Cow position: | chrX:2767129-2766887 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 67, 14 |
| Conread position: | 199-637 |
| Cow position: | chrX:16953721-16954149 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 136 |
| Conread position: | 203-431 |
| Cow position: | chrX:2400664-2400430 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 56, 190 |
| Conread position: | 204-431 |
| Cow position: | chrX:21835614-21835381 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 22, 34 |
| Conread position: | 208-407 |
| Cow position: | chrX:25487287-25487487 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 151, 123 |
| Conread position: | 208-407 |
| Cow position: | chrX:37148741-37148534 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 86, 150 |
| Conread position: | 210-431 |
| Cow position: | chrX:10094134-10093905 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 57, 197 |
| Conread position: | 213-602 |
| Cow position: | chrX:2874576-2874177 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 183 |
| Conread position: | 220-619 |
| Cow position: | chrX:22314694-22314280 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 200 |
| Conread position: | 260-617 |
| Cow position: | chrX:10257522-10257147 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 184 |
| Conread position: | 268-620 |
| Cow position: | chrX:2060800-2061160 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 23 |
| Conread position: | 298-623 |
| Cow position: | chrX:28809638-28809962 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 300-618 |
| Cow position: | chrX:4436291-4435976 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 103 |
| Conread position: | 363-618 |
| Cow position: | chrX:41811187-41811439 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 20, 72 |
| Conread position: | 363-620 |
| Cow position: | chrX:42129093-42129349 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 119, 15 |
| Conread position: | 370-632 |
| Cow position: | chrX:40552456-40552192 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 169 |
| Conread position: | 416-618 |
| Cow position: | chrX:6857335-6857130 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 160 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 12, 166 |
| Conread position: | 424-619 |
| Cow position: | chrX:21823392-21823194 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 430-618 |
| Cow position: | chrX:2398298-2398101 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 430-618 |
| Cow position: | chrX:13850957-13851142 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 430-618 |
| Cow position: | chrX:28125440-28125259 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 430-619 |
| Cow position: | chrX:3521775-3521585 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 48, 88 |
| Conread position: | 430-690 |
| Cow position: | chrX:33749230-33748975 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 171, 66 |
| Conread position: | 434-617 |
| Cow position: | chrX:7661673-7661857 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 149 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 125, 103 |
| Conread position: | 435-630 |
| Cow position: | chrX:31058547-31058740 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 53, 96 |
| Conread position: | 438-553 |
| Cow position: | chrX:27006822-27006708 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 438-630 |
| Cow position: | chrX:25789162-25788965 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 439-618 |
| Cow position: | chrX:36752427-36752614 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 439-623 |
| Cow position: | chrX:14815040-14815226 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 41, 74 |
| Conread position: | 450-612 |
| Cow position: | chrX:36837296-36837138 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 457-618 |
| Cow position: | chrX:11689979-11689816 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 29, 118 |
| Conread position: | 457-619 |
| Cow position: | chrX:37407768-37407926 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 457-629 |
| Cow position: | chrX:17822277-17822102 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 31, 7 |
| Conread position: | 489-633 |
| Cow position: | chrX:6011070-6010927 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 489-633 |
| Cow position: | chrX:6016683-6016826 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 490-623 |
| Cow position: | chrX:7168185-7168054 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 493-623 |
| Cow position: | chrX:15745152-15745026 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
Show alignments to all cow chromosomes.