Cow genome map
| Conread name: | Ss1.1-Pla1-C0000028_P03.5 |
| Conread position: | 1-166 |
| Cow position: | chr29:31988366-31988200 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 1-181 |
| Cow position: | chr29:31996410-31996229 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 1-181 |
| Cow position: | chr29:31996611-31996430 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 1-204 |
| Cow position: | chr29:31987196-31986993 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 78, 88 |
| Conread position: | 1-239 |
| Cow position: | chr29:31988186-31987948 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-239 |
| Cow position: | chr29:31990346-31990108 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-239 |
| Cow position: | chr29:31991924-31991686 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 223, 207 |
| Conread position: | 1-239 |
| Cow position: | chr29:31994066-31993828 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-243 |
| Cow position: | chr29:31997439-31997197 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-251 |
| Cow position: | chr29:31988588-31988338 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-251 |
| Cow position: | chr29:31990568-31990318 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-251 |
| Cow position: | chr29:31994288-31994038 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-335 |
| Cow position: | chr29:31993844-31993510 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-347 |
| Cow position: | chr29:31987580-31987234 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-347 |
| Cow position: | chr29:31987964-31987618 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-347 |
| Cow position: | chr29:31988972-31988626 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-347 |
| Cow position: | chr29:31989356-31989010 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-347 |
| Cow position: | chr29:31990124-31989778 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-347 |
| Cow position: | chr29:31990952-31990606 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-347 |
| Cow position: | chr29:31991336-31990990 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-347 |
| Cow position: | chr29:31991702-31991365 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 149, 142 |
| Conread position: | 1-347 |
| Cow position: | chr29:31992308-31991962 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-347 |
| Cow position: | chr29:31992692-31992346 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-347 |
| Cow position: | chr29:31993076-31992730 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-347 |
| Cow position: | chr29:31994673-31994326 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 0 |
| Conread position: | 1-347 |
| Cow position: | chr29:31995057-31994711 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-347 |
| Cow position: | chr29:31995441-31995095 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-347 |
| Cow position: | chr29:31995825-31995479 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-347 |
| Cow position: | chr29:31996209-31995863 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-347 |
| Cow position: | chr29:31997217-31996871 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-347 |
| Cow position: | chr29:31997823-31997477 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-347 |
| Cow position: | chr29:31998738-31998392 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-357 |
| Cow position: | chr29:31993460-31993104 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-361 |
| Cow position: | chr29:31989740-31989380 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-347 |
| Cow position: | chr29:31998352-31998029 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 152 |
| Conread position: | 4-239 |
| Cow position: | chr29:31996830-31996595 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 223, 204 |
| Conread position: | 39-344 |
| Cow position: | chr29:31999447-31999142 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 141-350 |
| Cow position: | chr29:31998982-31998773 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 345-648 |
| Cow position: | chr29:31984053-31983773 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.