• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-Pla1-C0000032_A06.5
        

               
Conread position:
               
1-103
               

               
Cow position:
               
chr21:29658559-29658457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr21:19136619-19136839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
115, 22
               

               
Conread position:
               
2-360
               

               
Cow position:
               
chr21:13263775-13263420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
25, 42
               

               
Conread position:
               
15-359
               

               
Cow position:
               
chr21:20166053-20165712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 140
               

               
Conread position:
               
97-358
               

               
Cow position:
               
chr21:9505199-9504937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
6, 63
               

               
Conread position:
               
101-294
               

               
Cow position:
               
chr21:35337597-35337786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
108-355
               

               
Cow position:
               
chr21:44732724-44732969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
152, 128
               

               
Conread position:
               
108-559
               

               
Cow position:
               
chr21:46848817-46849253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
109-308
               

               
Cow position:
               
chr21:5372717-5372916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
190, 151
               

               
Conread position:
               
112-499
               

               
Cow position:
               
chr21:40266437-40266048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 9
               

               
Conread position:
               
116-390
               

               
Cow position:
               
chr21:22014506-22014229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
18, 79
               

               
Conread position:
               
118-347
               

               
Cow position:
               
chr21:16797157-16796933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
184, 36
               

               
Conread position:
               
119-293
               

               
Cow position:
               
chr21:40593518-40593356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
121-342
               

               
Cow position:
               
chr21:3135562-3135782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
181, 77
               

               
Conread position:
               
122-293
               

               
Cow position:
               
chr21:29919206-29919367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
123-525
               

               
Cow position:
               
chr21:938324-937935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
16, 34
               

               
Conread position:
               
124-320
               

               
Cow position:
               
chr21:11706460-11706658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 121
               

               
Conread position:
               
124-330
               

               
Cow position:
               
chr21:19394579-19394784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
178, 15
               

               
Conread position:
               
125-350
               

               
Cow position:
               
chr21:37640865-37640641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
26, 10
               

               
Conread position:
               
126-344
               

               
Cow position:
               
chr21:24757237-24757026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
173, 36
               

               
Conread position:
               
127-339
               

               
Cow position:
               
chr21:742569-742368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
162, 16
               

               
Conread position:
               
127-346
               

               
Cow position:
               
chr21:874826-874605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
19, 8
               

               
Conread position:
               
127-361
               

               
Cow position:
               
chr21:18059658-18059893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
31, 136
               

               
Conread position:
               
127-376
               

               
Cow position:
               
chr21:34738868-34738633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
171, 29
               

               
Conread position:
               
129-358
               

               
Cow position:
               
chr21:5214654-5214419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
129-551
               

               
Cow position:
               
chr21:33982520-33982931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
172, 7
               

               
Conread position:
               
130-357
               

               
Cow position:
               
chr21:27409445-27409660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
172, 22
               

               
Conread position:
               
130-363
               

               
Cow position:
               
chr21:8959789-8959556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
172, 24
               

               
Conread position:
               
132-248
               

               
Cow position:
               
chr21:17882554-17882672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
132-545
               

               
Cow position:
               
chr21:18155269-18155690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 90
               

               
Conread position:
               
133-347
               

               
Cow position:
               
chr21:14717749-14717963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 122
               

               
Conread position:
               
133-347
               

               
Cow position:
               
chr21:16190474-16190688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 122
               

               
Conread position:
               
133-352
               

               
Cow position:
               
chr21:41437906-41437685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
133-359
               

               
Cow position:
               
chr21:21746165-21745939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
169, 25
               

               
Conread position:
               
133-370
               

               
Cow position:
               
chr21:13943822-13944057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 83
               

               
Conread position:
               
134-359
               

               
Cow position:
               
chr21:11174539-11174309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
11, 122
               

               
Conread position:
               
134-361
               

               
Cow position:
               
chr21:43316598-43316827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
28, 121
               

               
Conread position:
               
135-273
               

               
Cow position:
               
chr21:22495235-22495366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
135-327
               

               
Cow position:
               
chr21:12396795-12396600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
65, 120
               

               
Conread position:
               
135-359
               

               
Cow position:
               
chr21:37370273-37370491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 175
               

               
Conread position:
               
136-258
               

               
Cow position:
               
chr21:43220052-43220173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
136-271
               

               
Cow position:
               
chr21:10637155-10637290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
17, 33
               

               
Conread position:
               
136-296
               

               
Cow position:
               
chr21:42227406-42227564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
136-355
               

               
Cow position:
               
chr21:13985882-13985660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
9, 119
               

               
Conread position:
               
136-540
               

               
Cow position:
               
chr21:24094470-24094867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
166, 25
               

               
Conread position:
               
137-343
               

               
Cow position:
               
chr21:13960977-13960774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
165, 61
               

               
Conread position:
               
137-348
               

               
Cow position:
               
chr21:39278003-39278216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
117, 30
               

               
Conread position:
               
137-356
               

               
Cow position:
               
chr21:9278816-9278596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
165, 18
               

               
Conread position:
               
137-359
               

               
Cow position:
               
chr21:10130437-10130214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
165, 116
               

               
Conread position:
               
137-512
               

               
Cow position:
               
chr21:47363434-47363821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
96, 81
               

               
Conread position:
               
138-299
               

               
Cow position:
               
chr21:8961195-8961354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
138-345
               

               
Cow position:
               
chr21:18450041-18449837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
164, 20
               

               
Conread position:
               
138-360
               

               
Cow position:
               
chr21:6583850-6584069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
138-363
               

               
Cow position:
               
chr21:41974077-41974313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
38, 234
               

               
Conread position:
               
138-389
               

               
Cow position:
               
chr21:10743678-10743426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
164, 116
               

               
Conread position:
               
138-535
               

               
Cow position:
               
chr21:11739837-11740223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
163, 14
               

               
Conread position:
               
139-274
               

               
Cow position:
               
chr21:19097497-19097631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
139-357
               

               
Cow position:
               
chr21:12541109-12541327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
163, 115
               

               
Conread position:
               
139-357
               

               
Cow position:
               
chr21:22211545-22211325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
18, 116
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chr21:3178133-3177860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
163, 52
               

               
Conread position:
               
139-548
               

               
Cow position:
               
chr21:6713236-6713645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
160, 99
               

               
Conread position:
               
140-333
               

               
Cow position:
               
chr21:48334500-48334696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
91, 18
               

               
Conread position:
               
140-359
               

               
Cow position:
               
chr21:6154087-6153871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
162, 55
               

               
Conread position:
               
140-477
               

               
Cow position:
               
chr21:28919244-28919574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
267, 85
               

               
Conread position:
               
141-249
               

               
Cow position:
               
chr21:18545729-18545837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
141-294
               

               
Cow position:
               
chr21:45835106-45835252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
141-359
               

               
Cow position:
               
chr21:43368618-43368398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
16, 120
               

               
Conread position:
               
141-409
               

               
Cow position:
               
chr21:8545732-8546014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 115
               

               
Conread position:
               
141-546
               

               
Cow position:
               
chr21:44113850-44114248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
222, 95
               

               
Conread position:
               
141-558
               

               
Cow position:
               
chr21:5898123-5898527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
160, 41
               

               
Conread position:
               
142-257
               

               
Cow position:
               
chr21:45160401-45160287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
142-309
               

               
Cow position:
               
chr21:17948993-17949160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
160, 32
               

               
Conread position:
               
142-361
               

               
Cow position:
               
chr21:42328376-42328597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 26
               

               
Conread position:
               
142-558
               

               
Cow position:
               
chr21:27521058-27521458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 12
               

               
Conread position:
               
143-339
               

               
Cow position:
               
chr21:58732-58540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
9, 121
               

               
Conread position:
               
143-348
               

               
Cow position:
               
chr21:22005619-22005822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
159, 41
               

               
Conread position:
               
143-359
               

               
Cow position:
               
chr21:36022902-36023120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
20, 118
               

               
Conread position:
               
143-360
               

               
Cow position:
               
chr21:20163993-20163777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
13, 68
               

               
Conread position:
               
143-370
               

               
Cow position:
               
chr21:48482245-48482469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
23, 88
               

               
Conread position:
               
143-398
               

               
Cow position:
               
chr21:41546987-41546734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
159, 15
               

               
Conread position:
               
143-520
               

               
Cow position:
               
chr21:4281600-4281966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 28
               

               
Conread position:
               
143-537
               

               
Cow position:
               
chr21:10070640-10071046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
112, 24
               

               
Conread position:
               
144-330
               

               
Cow position:
               
chr21:3379471-3379653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
65, 24
               

               
Conread position:
               
144-347
               

               
Cow position:
               
chr21:11006483-11006689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
21, 118
               

               
Conread position:
               
144-370
               

               
Cow position:
               
chr21:40475784-40475558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 110
               

               
Conread position:
               
144-370
               

               
Cow position:
               
chr21:46776714-46776942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
158, 117
               

               
Conread position:
               
144-485
               

               
Cow position:
               
chr21:30255975-30256322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
144-559
               

               
Cow position:
               
chr21:9301507-9301078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
158, 23
               

               
Conread position:
               
145-255
               

               
Cow position:
               
chr21:42387207-42387318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
104, 22
               

               
Conread position:
               
145-258
               

               
Cow position:
               
chr21:12074896-12075009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
145-285
               

               
Cow position:
               
chr21:5489030-5488895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
145-304
               

               
Cow position:
               
chr21:7535268-7535420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
157, 35
               

               
Conread position:
               
145-311
               

               
Cow position:
               
chr21:30794139-30794308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
17, 111
               

               
Conread position:
               
145-320
               

               
Cow position:
               
chr21:39788257-39788430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
158, 53
               

               
Conread position:
               
145-326
               

               
Cow position:
               
chr21:40089482-40089665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
145-327
               

               
Cow position:
               
chr21:22716104-22715927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
157, 89
               

               
Conread position:
               
145-344
               

               
Cow position:
               
chr21:12912001-12911793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
12, 159
               

               
Conread position:
               
145-346
               

               
Cow position:
               
chr21:39394029-39393831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
43, 13
               

               
Conread position:
               
145-347
               

               
Cow position:
               
chr21:19220514-19220716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
157, 22
               

               
Conread position:
               
145-356
               

               
Cow position:
               
chr21:32647905-32648116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
157, 22
               

               
Conread position:
               
145-358
               

               
Cow position:
               
chr21:10423392-10423179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
157, 106
               

               
Conread position:
               
145-359
               

               
Cow position:
               
chr21:26392210-26391994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
12, 110
               

               
Conread position:
               
145-360
               

               
Cow position:
               
chr21:18720824-18721038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
157, 9
               

               
Conread position:
               
145-361
               

               
Cow position:
               
chr21:26828690-26828903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 9
               

               
Conread position:
               
145-361
               

               
Cow position:
               
chr21:38482664-38482451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 91
               

               
Conread position:
               
145-390
               

               
Cow position:
               
chr21:31759943-31760174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
145-474
               

               
Cow position:
               
chr21:21907159-21907476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 91
               

               
Conread position:
               
145-542
               

               
Cow position:
               
chr21:24342982-24343382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
12, 110
               

               
Conread position:
               
145-558
               

               
Cow position:
               
chr21:10004602-10005015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 24
               

               
Conread position:
               
145-559
               

               
Cow position:
               
chr21:13840612-13840192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 111
               

               
Conread position:
               
145-559
               

               
Cow position:
               
chr21:15545081-15545501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
65, 22
               

               
Conread position:
               
145-559
               

               
Cow position:
               
chr21:27863238-27863650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 13
               

               
Conread position:
               
146-292
               

               
Cow position:
               
chr21:20925184-20925329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 34
               

               
Conread position:
               
146-311
               

               
Cow position:
               
chr21:30359069-30359227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
146-358
               

               
Cow position:
               
chr21:17519309-17519092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
84, 112
               

               
Conread position:
               
146-409
               

               
Cow position:
               
chr21:976871-977139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
145, 12
               

               
Conread position:
               
146-559
               

               
Cow position:
               
chr21:41590287-41590687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
151, 23
               

               
Conread position:
               
147-255
               

               
Cow position:
               
chr21:41453031-41453138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
147-342
               

               
Cow position:
               
chr21:27568172-27567981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
155, 7
               

               
Conread position:
               
147-360
               

               
Cow position:
               
chr21:31279532-31279325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
151, 20
               

               
Conread position:
               
147-361
               

               
Cow position:
               
chr21:17418803-17419014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
147-382
               

               
Cow position:
               
chr21:6851445-6851219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
13, 21
               

               
Conread position:
               
148-280
               

               
Cow position:
               
chr21:17151595-17151466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
148-325
               

               
Cow position:
               
chr21:16119883-16120058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
154, 50
               

               
Conread position:
               
148-518
               

               
Cow position:
               
chr21:6998221-6997846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
5, 80
               

               
Conread position:
               
148-518
               

               
Cow position:
               
chr21:30835645-30835270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
153, 106
               

               
Conread position:
               
148-536
               

               
Cow position:
               
chr21:32339466-32339849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 72
               

               
Conread position:
               
149-276
               

               
Cow position:
               
chr21:20260019-20260143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
149-361
               

               
Cow position:
               
chr21:17410077-17410281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
153, 52
               

               
Conread position:
               
149-361
               

               
Cow position:
               
chr21:21969092-21968879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
153, 105
               

               
Conread position:
               
149-389
               

               
Cow position:
               
chr21:14027344-14027102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
109, 81
               

               
Conread position:
               
149-520
               

               
Cow position:
               
chr21:13753149-13752793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
153, 46
               

               
Conread position:
               
149-546
               

               
Cow position:
               
chr21:17455660-17455267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
153, 52
               

               
Conread position:
               
149-551
               

               
Cow position:
               
chr21:13713559-13713966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
153, 52
               

               
Conread position:
               
149-551
               

               
Cow position:
               
chr21:17432992-17433377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
27, 48
               

               
Conread position:
               
149-554
               

               
Cow position:
               
chr21:641862-641457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
147, 97
               

               
Conread position:
               
150-295
               

               
Cow position:
               
chr21:13488832-13488688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
150-320
               

               
Cow position:
               
chr21:42047763-42047933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
152, 46
               

               
Conread position:
               
150-345
               

               
Cow position:
               
chr21:10138216-10138019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
99, 128
               

               
Conread position:
               
150-346
               

               
Cow position:
               
chr21:11182828-11182636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
8, 63
               

               
Conread position:
               
150-374
               

               
Cow position:
               
chr21:26562881-26563110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 101
               

               
Conread position:
               
150-522
               

               
Cow position:
               
chr21:22121779-22121426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
155, 81
               

               
Conread position:
               
151-251
               

               
Cow position:
               
chr21:46141506-46141406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
151-258
               

               
Cow position:
               
chr21:41216834-41216729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
151-292
               

               
Cow position:
               
chr21:4008655-4008794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
151-294
               

               
Cow position:
               
chr21:37479315-37479456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
151-296
               

               
Cow position:
               
chr21:39845877-39845729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
85, 11
               

               
Conread position:
               
151-323
               

               
Cow position:
               
chr21:19990543-19990711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
151, 91
               

               
Conread position:
               
151-339
               

               
Cow position:
               
chr21:7460881-7460697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
150, 85
               

               
Conread position:
               
151-339
               

               
Cow position:
               
chr21:18471850-18471661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-342
               

               
Cow position:
               
chr21:13134872-13134688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
151, 16
               

               
Conread position:
               
151-342
               

               
Cow position:
               
chr21:28792689-28792497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-343
               

               
Cow position:
               
chr21:7424737-7424928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
17, 32
               

               
Conread position:
               
151-347
               

               
Cow position:
               
chr21:13104124-13104321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
150, 103
               

               
Conread position:
               
151-347
               

               
Cow position:
               
chr21:39319134-39319328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
151, 44
               

               
Conread position:
               
151-358
               

               
Cow position:
               
chr21:8986301-8986093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
98, 17
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr21:8430821-8431030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr21:14639202-14638994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr21:15869962-15869760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
151, 23
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr21:35084317-35084527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
6, 117
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr21:35409787-35409578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
6, 80
               

               
Conread position:
               
151-360
               

               
Cow position:
               
chr21:27711957-27712174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
10, 104
               

               
Conread position:
               
151-361
               

               
Cow position:
               
chr21:5218985-5218770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
14, 98
               

               
Conread position:
               
151-361
               

               
Cow position:
               
chr21:36280568-36280358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
151, 16
               

               
Conread position:
               
151-364
               

               
Cow position:
               
chr21:12322774-12322562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
151, 85
               

               
Conread position:
               
151-365
               

               
Cow position:
               
chr21:2763362-2763147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
151, 24
               

               
Conread position:
               
151-390
               

               
Cow position:
               
chr21:37928927-37928684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 47
               

               
Conread position:
               
151-519
               

               
Cow position:
               
chr21:25345140-25344778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-526
               

               
Cow position:
               
chr21:3400538-3400934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 32
               

               
Conread position:
               
151-544
               

               
Cow position:
               
chr21:22856500-22856099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
41, 55
               

               
Conread position:
               
151-558
               

               
Cow position:
               
chr21:13034759-13035176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-558
               

               
Cow position:
               
chr21:18568361-18568779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 103
               

               
Conread position:
               
151-559
               

               
Cow position:
               
chr21:17638172-17637768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
11, 104
               

               
Conread position:
               
152-347
               

               
Cow position:
               
chr21:24611495-24611691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 78
               

               
Conread position:
               
152-347
               

               
Cow position:
               
chr21:39888451-39888658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
92, 186
               

               
Conread position:
               
152-559
               

               
Cow position:
               
chr21:10007361-10007771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
5, 100
               

               
Conread position:
               
153-559
               

               
Cow position:
               
chr21:47464845-47465251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
148, 97
               

               
Conread position:
               
154-284
               

               
Cow position:
               
chr21:26002225-26002356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
92, 110
               

               
Conread position:
               
154-315
               

               
Cow position:
               
chr21:37014152-37014312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
154-321
               

               
Cow position:
               
chr21:8496051-8496221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
8, 101
               

               
Conread position:
               
154-328
               

               
Cow position:
               
chr21:17857038-17856866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
147, 94
               

               
Conread position:
               
154-342
               

               
Cow position:
               
chr21:12473789-12473972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
148, 86
               

               
Conread position:
               
154-347
               

               
Cow position:
               
chr21:10624657-10624851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
8, 101
               

               
Conread position:
               
154-347
               

               
Cow position:
               
chr21:34737434-34737248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
154-354
               

               
Cow position:
               
chr21:24351123-24350927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
117, 13
               

               
Conread position:
               
154-359
               

               
Cow position:
               
chr21:21940138-21940337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
148, 77
               

               
Conread position:
               
154-536
               

               
Cow position:
               
chr21:13089198-13089580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
91, 39
               

               
Conread position:
               
154-546
               

               
Cow position:
               
chr21:40899614-40899219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
148, 63
               

               
Conread position:
               
154-551
               

               
Cow position:
               
chr21:28924397-28923994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 231
               

               
Conread position:
               
154-559
               

               
Cow position:
               
chr21:49699764-49700166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 106
               

               
Conread position:
               
155-300
               

               
Cow position:
               
chr21:34209742-34209885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
155-335
               

               
Cow position:
               
chr21:46627511-46627342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
75, 37
               

               
Conread position:
               
155-345
               

               
Cow position:
               
chr21:8494916-8494724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
22, 117
               

               
Conread position:
               
155-345
               

               
Cow position:
               
chr21:11779266-11779457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
155-346
               

               
Cow position:
               
chr21:22720839-22720657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
97, 116
               

               
Conread position:
               
155-360
               

               
Cow position:
               
chr21:29418843-29418639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
146, 99
               

               
Conread position:
               
155-370
               

               
Cow position:
               
chr21:25012349-25012141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
146, 12
               

               
Conread position:
               
155-507
               

               
Cow position:
               
chr21:45970907-45971254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
147, 85
               

               
Conread position:
               
155-546
               

               
Cow position:
               
chr21:38918474-38918097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
147, 169
               

               
Conread position:
               
156-358
               

               
Cow position:
               
chr21:41041218-41041015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
75, 12
               

               
Conread position:
               
156-360
               

               
Cow position:
               
chr21:40291477-40291679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
28, 85
               

               
Conread position:
               
156-361
               

               
Cow position:
               
chr21:26018650-26018447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
149, 6
               

               
Conread position:
               
156-390
               

               
Cow position:
               
chr21:27677755-27677521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
8, 105
               

               
Conread position:
               
156-477
               

               
Cow position:
               
chr21:868649-868975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 12
               

               
Conread position:
               
156-551
               

               
Cow position:
               
chr21:30222612-30222219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
142, 11
               

               
Conread position:
               
156-551
               

               
Cow position:
               
chr21:42501324-42500910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 96
               

               
Conread position:
               
157-266
               

               
Cow position:
               
chr21:49627287-49627396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 98
               

               
Conread position:
               
158-276
               

               
Cow position:
               
chr21:28955888-28955775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
158-286
               

               
Cow position:
               
chr21:12293293-12293166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
158-296
               

               
Cow position:
               
chr21:10727779-10727644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
158-296
               

               
Cow position:
               
chr21:41829110-41829246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
158-297
               

               
Cow position:
               
chr21:49144731-49144869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
158-301
               

               
Cow position:
               
chr21:49644819-49644960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
158-305
               

               
Cow position:
               
chr21:38633004-38632857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-305
               

               
Cow position:
               
chr21:48242779-48242931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 101
               

               
Conread position:
               
158-306
               

               
Cow position:
               
chr21:16099291-16099441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
82, 104
               

               
Conread position:
               
158-315
               

               
Cow position:
               
chr21:19339961-19340118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
144, 78
               

               
Conread position:
               
158-319
               

               
Cow position:
               
chr21:41193884-41194045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
144, 76
               

               
Conread position:
               
158-320
               

               
Cow position:
               
chr21:40312615-40312777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 97
               

               
Conread position:
               
158-323
               

               
Cow position:
               
chr21:5345150-5344984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-325
               

               
Cow position:
               
chr21:6042057-6041887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
94, 10
               

               
Conread position:
               
158-326
               

               
Cow position:
               
chr21:12529980-12530149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-326
               

               
Cow position:
               
chr21:18495484-18495324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
143, 70
               

               
Conread position:
               
158-327
               

               
Cow position:
               
chr21:22036870-22036699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-332
               

               
Cow position:
               
chr21:16498782-16498613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
140, 11
               

               
Conread position:
               
158-332
               

               
Cow position:
               
chr21:18055858-18056032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
18, 84
               

               
Conread position:
               
158-333
               

               
Cow position:
               
chr21:10829598-10829774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
144, 93
               

               
Conread position:
               
158-334
               

               
Cow position:
               
chr21:20416791-20416613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
16, 100
               

               
Conread position:
               
158-339
               

               
Cow position:
               
chr21:29011707-29011880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
139, 90
               

               
Conread position:
               
158-340
               

               
Cow position:
               
chr21:9873589-9873406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
144, 29
               

               
Conread position:
               
158-341
               

               
Cow position:
               
chr21:7357814-7357630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-341
               

               
Cow position:
               
chr21:9259699-9259883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
147, 96
               

               
Conread position:
               
158-343
               

               
Cow position:
               
chr21:8882188-8882009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
144, 16
               

               
Conread position:
               
158-344
               

               
Cow position:
               
chr21:8558207-8558389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 9
               

               
Conread position:
               
158-344
               

               
Cow position:
               
chr21:8651557-8651369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
144, 133
               

               
Conread position:
               
158-344
               

               
Cow position:
               
chr21:31278457-31278268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
122, 96
               

               
Conread position:
               
158-344
               

               
Cow position:
               
chr21:45446806-45446617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
141, 9
               

               
Conread position:
               
158-345
               

               
Cow position:
               
chr21:10656832-10657019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-345
               

               
Cow position:
               
chr21:13883746-13883565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
143, 33
               

               
Conread position:
               
158-345
               

               
Cow position:
               
chr21:17403577-17403766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 110
               

               
Conread position:
               
158-345
               

               
Cow position:
               
chr21:40551473-40551659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
144, 40
               

               
Conread position:
               
158-346
               

               
Cow position:
               
chr21:8506278-8506463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
143, 82
               

               
Conread position:
               
158-346
               

               
Cow position:
               
chr21:8509166-8509351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
143, 82
               

               
Conread position:
               
158-346
               

               
Cow position:
               
chr21:26034099-26033910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
144, 95
               

               
Conread position:
               
158-346
               

               
Cow position:
               
chr21:42680326-42680521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 166
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr21:10450077-10450266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
144, 42
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr21:15201022-15200838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
143, 96
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr21:33169866-33169680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
144, 9
               

               
Conread position:
               
158-348
               

               
Cow position:
               
chr21:19702998-19702818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
143, 10
               

               
Conread position:
               
158-350
               

               
Cow position:
               
chr21:8924640-8924448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
143, 54
               

               
Conread position:
               
158-350
               

               
Cow position:
               
chr21:43388630-43388437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
158-354
               

               
Cow position:
               
chr21:10751315-10751119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-354
               

               
Cow position:
               
chr21:19248718-19248913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
144, 29
               

               
Conread position:
               
158-354
               

               
Cow position:
               
chr21:20193242-20193045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-356
               

               
Cow position:
               
chr21:14247405-14247208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-357
               

               
Cow position:
               
chr21:41540660-41540864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
22, 100
               

               
Conread position:
               
158-358
               

               
Cow position:
               
chr21:4109045-4108846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
144, 9
               

               
Conread position:
               
158-358
               

               
Cow position:
               
chr21:21167998-21167795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
22, 115
               

               
Conread position:
               
158-358
               

               
Cow position:
               
chr21:41043048-41043248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-358
               

               
Cow position:
               
chr21:42131070-42131284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
71, 9
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr21:11755495-11755695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
120, 41
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr21:12748967-12749169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr21:13304064-13303862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr21:13817666-13817462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
41, 106
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr21:17155679-17155882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
66, 97
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr21:19148382-19148180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
88, 28
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr21:19561295-19561498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr21:36765546-36765748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
147, 96
               

               
Conread position:
               
158-360
               

               
Cow position:
               
chr21:31652656-31652457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-360
               

               
Cow position:
               
chr21:42145088-42144893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
143, 60
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr21:10980632-10980426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
34, 68
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr21:16895675-16895482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr21:22524911-22525114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
144, 9
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr21:30938397-30938604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
144, 71
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr21:34833810-34834012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
65, 17
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr21:36763330-36763129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
141, 10
               

               
Conread position:
               
158-362
               

               
Cow position:
               
chr21:10587215-10587420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-362
               

               
Cow position:
               
chr21:17842726-17842930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-366
               

               
Cow position:
               
chr21:30976997-30977193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
8, 78
               

               
Conread position:
               
158-370
               

               
Cow position:
               
chr21:36682593-36682384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
141, 11
               

               
Conread position:
               
158-380
               

               
Cow position:
               
chr21:40059284-40059077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
143, 10
               

               
Conread position:
               
158-409
               

               
Cow position:
               
chr21:36508499-36508245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
143, 37
               

               
Conread position:
               
158-485
               

               
Cow position:
               
chr21:19059822-19060145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
144, 94
               

               
Conread position:
               
158-505
               

               
Cow position:
               
chr21:44251572-44251914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 37
               

               
Conread position:
               
158-507
               

               
Cow position:
               
chr21:10859079-10858735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-507
               

               
Cow position:
               
chr21:16152709-16152350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
141, 87
               

               
Conread position:
               
158-512
               

               
Cow position:
               
chr21:9036570-9036209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
144, 53
               

               
Conread position:
               
158-523
               

               
Cow position:
               
chr21:45151356-45151720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
136, 96
               

               
Conread position:
               
158-525
               

               
Cow position:
               
chr21:22193825-22194214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-546
               

               
Cow position:
               
chr21:19958485-19958105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
131, 93
               

               
Conread position:
               
158-546
               

               
Cow position:
               
chr21:23979910-23980304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-546
               

               
Cow position:
               
chr21:27669280-27668894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
158-546
               

               
Cow position:
               
chr21:42841316-42841710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
77, 267
               

               
Conread position:
               
158-552
               

               
Cow position:
               
chr21:25127880-25127477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 100
               

               
Conread position:
               
158-558
               

               
Cow position:
               
chr21:40589210-40589612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
12, 89
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr21:957938-957537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 82
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr21:3763483-3763868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
144, 9
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr21:6051773-6051376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr21:13047921-13048327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr21:17184189-17183791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 71
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr21:39664129-39664519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
144, 37
               

               
Conread position:
               
158-572
               

               
Cow position:
               
chr21:643590-643190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
159-258
               

               
Cow position:
               
chr21:38440704-38440605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
159-261
               

               
Cow position:
               
chr21:16954402-16954300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
159-278
               

               
Cow position:
               
chr21:20585408-20585525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
159-280
               

               
Cow position:
               
chr21:17910987-17911107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
159-297
               

               
Cow position:
               
chr21:19825125-19825262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
159-303
               

               
Cow position:
               
chr21:40821627-40821767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
159-312
               

               
Cow position:
               
chr21:8880083-8880236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
143, 91
               

               
Conread position:
               
159-313
               

               
Cow position:
               
chr21:18577905-18578056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
159-315
               

               
Cow position:
               
chr21:9311322-9311166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
142, 17
               

               
Conread position:
               
159-320
               

               
Cow position:
               
chr21:19176512-19176351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
143, 100
               

               
Conread position:
               
159-322
               

               
Cow position:
               
chr21:24060924-24061088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
92, 25
               

               
Conread position:
               
159-326
               

               
Cow position:
               
chr21:21772360-21772192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
159-327
               

               
Cow position:
               
chr21:8168465-8168296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
159-339
               

               
Cow position:
               
chr21:32272197-32272010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
159-342
               

               
Cow position:
               
chr21:8523900-8523728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
142, 16
               

               
Conread position:
               
159-343
               

               
Cow position:
               
chr21:20199161-20199345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
143, 25
               

               
Conread position:
               
159-345
               

               
Cow position:
               
chr21:10148267-10148081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
159-346
               

               
Cow position:
               
chr21:1464611-1464426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
143, 36
               

               
Conread position:
               
159-346
               

               
Cow position:
               
chr21:8950461-8950272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
105, 113
               

               
Conread position:
               
159-347
               

               
Cow position:
               
chr21:17559648-17559841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
95, 168
               

               
Conread position:
               
159-347
               

               
Cow position:
               
chr21:36121497-36121309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
142, 46
               

               
Conread position:
               
159-348
               

               
Cow position:
               
chr21:10009548-10009736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
143, 39
               

               
Conread position:
               
159-348
               

               
Cow position:
               
chr21:15271171-15271356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
143, 32
               

               
Conread position:
               
159-348
               

               
Cow position:
               
chr21:37835854-37835665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
143, 112
               

               
Conread position:
               
159-348
               

               
Cow position:
               
chr21:45376214-45376032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
142, 9
               

               
Conread position:
               
159-356
               

               
Cow position:
               
chr21:5465015-5464821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
143, 94
               

               
Conread position:
               
159-359
               

               
Cow position:
               
chr21:11099702-11099901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
36, 15
               

               
Conread position:
               
159-359
               

               
Cow position:
               
chr21:13090644-13090444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
140, 9
               

               
Conread position:
               
159-360
               

               
Cow position:
               
chr21:8713689-8713891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
159-361
               

               
Cow position:
               
chr21:13580683-13580481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
159-361
               

               
Cow position:
               
chr21:13674383-13674584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
143, 16
               

               
Conread position:
               
159-370
               

               
Cow position:
               
chr21:38720517-38720309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
142, 55
               

               
Conread position:
               
159-388
               

               
Cow position:
               
chr21:10817302-10817071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
159-524
               

               
Cow position:
               
chr21:6834318-6833950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 99
               

               
Conread position:
               
159-524
               

               
Cow position:
               
chr21:16915048-16914677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
143, 8
               

               
Conread position:
               
159-548
               

               
Cow position:
               
chr21:3236771-3236408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
127, 102
               

               
Conread position:
               
159-549
               

               
Cow position:
               
chr21:17512042-17511654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
89, 50
               

               
Conread position:
               
159-559
               

               
Cow position:
               
chr21:34001-33591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 106
               

               
Conread position:
               
159-559
               

               
Cow position:
               
chr21:11027090-11027488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
249, 58
               

               
Conread position:
               
159-559
               

               
Cow position:
               
chr21:12154392-12154005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
186, 9
               

               
Conread position:
               
159-559
               

               
Cow position:
               
chr21:14464854-14464446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 94
               

               
Conread position:
               
159-559
               

               
Cow position:
               
chr21:19083317-19083731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
143, 112
               

               
Conread position:
               
159-559
               

               
Cow position:
               
chr21:38449183-38449582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
17, 82
               

               
Conread position:
               
159-559
               

               
Cow position:
               
chr21:41156139-41155730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 72
               

               
Conread position:
               
159-559
               

               
Cow position:
               
chr21:41621395-41620989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 10
               

               
Conread position:
               
160-323
               

               
Cow position:
               
chr21:48204951-48205115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
145, 100
               

               
Conread position:
               
160-342
               

               
Cow position:
               
chr21:47860868-47860685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
142, 27
               

               
Conread position:
               
160-343
               

               
Cow position:
               
chr21:48527683-48527495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
73, 162
               

               
Conread position:
               
160-345
               

               
Cow position:
               
chr21:10072433-10072248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
138, 107
               

               
Conread position:
               
160-345
               

               
Cow position:
               
chr21:10660625-10660809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
142, 7
               

               
Conread position:
               
160-347
               

               
Cow position:
               
chr21:27744296-27744107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
71, 96
               

               
Conread position:
               
160-347
               

               
Cow position:
               
chr21:41738175-41737990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
142, 56
               

               
Conread position:
               
160-358
               

               
Cow position:
               
chr21:41610445-41610238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
72, 7
               

               
Conread position:
               
160-360
               

               
Cow position:
               
chr21:9030259-9030050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
70, 108
               

               
Conread position:
               
160-361
               

               
Cow position:
               
chr21:22851182-22850987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
138, 71
               

               
Conread position:
               
160-361
               

               
Cow position:
               
chr21:43693084-43692884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
142, 47
               

               
Conread position:
               
160-554
               

               
Cow position:
               
chr21:14452500-14452111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 38
               

               
Conread position:
               
161-309
               

               
Cow position:
               
chr21:46609737-46609884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
136, 87
               

               
Conread position:
               
161-347
               

               
Cow position:
               
chr21:11340654-11340467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-359
               

               
Cow position:
               
chr21:9819261-9819455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
141, 81
               

               
Conread position:
               
161-359
               

               
Cow position:
               
chr21:12366639-12366441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-359
               

               
Cow position:
               
chr21:18341485-18341288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
141, 26
               

               
Conread position:
               
161-359
               

               
Cow position:
               
chr21:22217597-22217792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-361
               

               
Cow position:
               
chr21:1562264-1562474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
161-369
               

               
Cow position:
               
chr21:790041-790253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
105, 93
               

               
Conread position:
               
161-369
               

               
Cow position:
               
chr21:19067799-19067584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
91, 104
               

               
Conread position:
               
161-370
               

               
Cow position:
               
chr21:700523-700734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-370
               

               
Cow position:
               
chr21:3415923-3415712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
34, 94
               

               
Conread position:
               
161-370
               

               
Cow position:
               
chr21:40820585-40820794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
140, 93
               

               
Conread position:
               
161-390
               

               
Cow position:
               
chr21:37706146-37706376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 90
               

               
Conread position:
               
161-409
               

               
Cow position:
               
chr21:13589028-13588766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-514
               

               
Cow position:
               
chr21:17364212-17364564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
141, 61
               

               
Conread position:
               
161-525
               

               
Cow position:
               
chr21:13584786-13585168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 293
               

               
Conread position:
               
161-546
               

               
Cow position:
               
chr21:7785486-7785108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-554
               

               
Cow position:
               
chr21:47313-46913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
80, 97
               

               
Conread position:
               
161-557
               

               
Cow position:
               
chr21:9477430-9477030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
138, 81
               

               
Conread position:
               
161-558
               

               
Cow position:
               
chr21:28028065-28027674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
162-267
               

               
Cow position:
               
chr21:46142422-46142318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
162-278
               

               
Cow position:
               
chr21:785547-785660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
162-284
               

               
Cow position:
               
chr21:41668894-41668777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
14, 79
               

               
Conread position:
               
162-295
               

               
Cow position:
               
chr21:17072863-17072738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
121, 72
               

               
Conread position:
               
162-326
               

               
Cow position:
               
chr21:43655967-43655805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
136, 78
               

               
Conread position:
               
162-327
               

               
Cow position:
               
chr21:39810325-39810160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
137, 92
               

               
Conread position:
               
162-333
               

               
Cow position:
               
chr21:45537455-45537280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
24, 94
               

               
Conread position:
               
162-342
               

               
Cow position:
               
chr21:438821-438649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
136, 73
               

               
Conread position:
               
162-343
               

               
Cow position:
               
chr21:4269202-4269030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
85, 28
               

               
Conread position:
               
162-356
               

               
Cow position:
               
chr21:30145368-30145555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
162-357
               

               
Cow position:
               
chr21:874589-874393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
140, 92
               

               
Conread position:
               
162-358
               

               
Cow position:
               
chr21:41917974-41918170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
75, 48
               

               
Conread position:
               
162-359
               

               
Cow position:
               
chr21:16604047-16604247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
12, 102
               

               
Conread position:
               
162-359
               

               
Cow position:
               
chr21:38728421-38728224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
140, 92
               

               
Conread position:
               
162-361
               

               
Cow position:
               
chr21:44724111-44724300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
162-362
               

               
Cow position:
               
chr21:12349033-12348832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
140, 98
               

               
Conread position:
               
162-409
               

               
Cow position:
               
chr21:32297243-32297504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
162-409
               

               
Cow position:
               
chr21:32392798-32393046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
90, 13
               

               
Conread position:
               
162-533
               

               
Cow position:
               
chr21:34010131-34010504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
133, 63
               

               
Conread position:
               
162-559
               

               
Cow position:
               
chr21:12461704-12462101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 82
               

               
Conread position:
               
162-559
               

               
Cow position:
               
chr21:38901028-38900644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 73
               

               
Conread position:
               
163-269
               

               
Cow position:
               
chr21:38748085-38747980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
163-280
               

               
Cow position:
               
chr21:18578304-18578420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
163-285
               

               
Cow position:
               
chr21:48609243-48609121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
163-287
               

               
Cow position:
               
chr21:10446829-10446705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
163-296
               

               
Cow position:
               
chr21:5476846-5476714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
163-297
               

               
Cow position:
               
chr21:37855416-37855283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
163-301
               

               
Cow position:
               
chr21:873904-873767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
163-311
               

               
Cow position:
               
chr21:7768744-7768893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
139, 97
               

               
Conread position:
               
163-320
               

               
Cow position:
               
chr21:8358965-8359116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
135, 30
               

               
Conread position:
               
163-320
               

               
Cow position:
               
chr21:33384235-33384393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
139, 97
               

               
Conread position:
               
163-347
               

               
Cow position:
               
chr21:2536872-2537057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
139, 88
               

               
Conread position:
               
163-353
               

               
Cow position:
               
chr21:15305031-15305223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
69, 98
               

               
Conread position:
               
163-358
               

               
Cow position:
               
chr21:745434-745246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
139, 71
               

               
Conread position:
               
163-359
               

               
Cow position:
               
chr21:13225981-13225785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
139, 52
               

               
Conread position:
               
163-359
               

               
Cow position:
               
chr21:37837814-37837996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
137, 64
               

               
Conread position:
               
163-360
               

               
Cow position:
               
chr21:42189496-42189688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
139, 77
               

               
Conread position:
               
163-361
               

               
Cow position:
               
chr21:17531399-17531197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
163-361
               

               
Cow position:
               
chr21:29658538-29658344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
113, 86
               

               
Conread position:
               
163-361
               

               
Cow position:
               
chr21:31658890-31659079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
139, 66
               

               
Conread position:
               
163-361
               

               
Cow position:
               
chr21:41140451-41140649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
134, 91
               

               
Conread position:
               
163-361
               

               
Cow position:
               
chr21:46612540-46612726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
139, 38
               

               
Conread position:
               
163-370
               

               
Cow position:
               
chr21:19624667-19624458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
139, 12
               

               
Conread position:
               
163-380
               

               
Cow position:
               
chr21:17252712-17252929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
6, 88
               

               
Conread position:
               
163-405
               

               
Cow position:
               
chr21:18355464-18355223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
117, 91
               

               
Conread position:
               
163-473
               

               
Cow position:
               
chr21:29014653-29014959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
142, 68
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr21:3585100-3585489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 91
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr21:23587135-23586746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 5
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr21:24222253-24222672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
74, 260
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr21:28244731-28244345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 71
               

               
Conread position:
               
164-299
               

               
Cow position:
               
chr21:2904040-2904173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
92, 31
               

               
Conread position:
               
164-312
               

               
Cow position:
               
chr21:19236705-19236854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
138, 96
               

               
Conread position:
               
164-326
               

               
Cow position:
               
chr21:41482710-41482872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
131, 86
               

               
Conread position:
               
164-345
               

               
Cow position:
               
chr21:16794057-16793879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
164-345
               

               
Cow position:
               
chr21:31246534-31246354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
164-347
               

               
Cow position:
               
chr21:8426706-8426528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
37, 83
               

               
Conread position:
               
164-347
               

               
Cow position:
               
chr21:20174575-20174400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
137, 61
               

               
Conread position:
               
164-347
               

               
Cow position:
               
chr21:23568488-23568310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
138, 67
               

               
Conread position:
               
164-347
               

               
Cow position:
               
chr21:28882446-28882263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
138, 90
               

               
Conread position:
               
164-347
               

               
Cow position:
               
chr21:40457871-40457683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
92, 57
               

               
Conread position:
               
164-347
               

               
Cow position:
               
chr21:47719042-47719217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
164-358
               

               
Cow position:
               
chr21:12310736-12310548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
164-359
               

               
Cow position:
               
chr21:12916155-12916351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
138, 96
               

               
Conread position:
               
164-360
               

               
Cow position:
               
chr21:13656371-13656567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
138, 96
               

               
Conread position:
               
164-361
               

               
Cow position:
               
chr21:17983234-17983048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
164-388
               

               
Cow position:
               
chr21:674931-674725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
143, 76
               

               
Conread position:
               
164-399
               

               
Cow position:
               
chr21:71849-71618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
138, 72
               

               
Conread position:
               
164-409
               

               
Cow position:
               
chr21:38943345-38943599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
104, 50
               

               
Conread position:
               
164-485
               

               
Cow position:
               
chr21:17890566-17890245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
138, 86
               

               
Conread position:
               
164-520
               

               
Cow position:
               
chr21:10264298-10263942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 90
               

               
Conread position:
               
164-535
               

               
Cow position:
               
chr21:23535976-23535603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 88
               

               
Conread position:
               
164-545
               

               
Cow position:
               
chr21:30592051-30592420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
137, 64
               

               
Conread position:
               
164-546
               

               
Cow position:
               
chr21:27810655-27810287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
88, 167
               

               
Conread position:
               
164-554
               

               
Cow position:
               
chr21:20153220-20152822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 114
               

               
Conread position:
               
164-555
               

               
Cow position:
               
chr21:27568896-27569287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
84, 101
               

               
Conread position:
               
164-559
               

               
Cow position:
               
chr21:82322-81940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
137, 43
               

               
Conread position:
               
164-559
               

               
Cow position:
               
chr21:17874927-17875326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
135, 96
               

               
Conread position:
               
164-559
               

               
Cow position:
               
chr21:24296502-24296895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
134, 96
               

               
Conread position:
               
165-370
               

               
Cow position:
               
chr21:28907287-28907485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
133, 58
               

               
Conread position:
               
166-357
               

               
Cow position:
               
chr21:18783205-18783397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
136, 79
               

               
Conread position:
               
166-370
               

               
Cow position:
               
chr21:24875613-24875411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
127, 84
               

               
Conread position:
               
166-559
               

               
Cow position:
               
chr21:23673006-23672612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
135, 42
               

               
Conread position:
               
167-315
               

               
Cow position:
               
chr21:40846770-40846622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
106, 51
               

               
Conread position:
               
167-339
               

               
Cow position:
               
chr21:6391602-6391431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
135, 7
               

               
Conread position:
               
167-342
               

               
Cow position:
               
chr21:6292009-6291833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
135, 87
               

               
Conread position:
               
167-347
               

               
Cow position:
               
chr21:13462979-13462802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
9, 35
               

               
Conread position:
               
167-359
               

               
Cow position:
               
chr21:17516070-17515878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
135, 87
               

               
Conread position:
               
167-361
               

               
Cow position:
               
chr21:14228635-14228834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
55, 97
               

               
Conread position:
               
167-361
               

               
Cow position:
               
chr21:18318973-18318780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
131, 93
               

               
Conread position:
               
167-361
               

               
Cow position:
               
chr21:24797915-24797725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
134, 69
               

               
Conread position:
               
167-361
               

               
Cow position:
               
chr21:44829496-44829691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
135, 93
               

               
Conread position:
               
167-477
               

               
Cow position:
               
chr21:36910997-36910690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
135, 63
               

               
Conread position:
               
167-519
               

               
Cow position:
               
chr21:48637496-48637853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
135, 9
               

               
Conread position:
               
167-520
               

               
Cow position:
               
chr21:33413837-33414183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 68
               

               
Conread position:
               
167-559
               

               
Cow position:
               
chr21:22718523-22718911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 49
               

               
Conread position:
               
168-344
               

               
Cow position:
               
chr21:11353323-11353145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
17, 87
               

               
Conread position:
               
168-347
               

               
Cow position:
               
chr21:30970194-30970017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
131, 38
               

               
Conread position:
               
168-360
               

               
Cow position:
               
chr21:39269061-39268870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
133, 9
               

               
Conread position:
               
168-362
               

               
Cow position:
               
chr21:36115866-36115670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
168-390
               

               
Cow position:
               
chr21:12739347-12739119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
75, 99
               

               
Conread position:
               
168-390
               

               
Cow position:
               
chr21:20213512-20213739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
168-515
               

               
Cow position:
               
chr21:22209984-22210333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
84, 73
               

               
Conread position:
               
168-536
               

               
Cow position:
               
chr21:30848689-30849052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
133, 72
               

               
Conread position:
               
168-558
               

               
Cow position:
               
chr21:30231437-30231831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 86
               

               
Conread position:
               
168-559
               

               
Cow position:
               
chr21:15444823-15445209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 86
               

               
Conread position:
               
168-559
               

               
Cow position:
               
chr21:42135360-42135754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
130, 66
               

               
Conread position:
               
169-360
               

               
Cow position:
               
chr21:11743235-11743435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
62, 173
               

               
Conread position:
               
169-374
               

               
Cow position:
               
chr21:46809506-46809713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
133, 49
               

               
Conread position:
               
169-380
               

               
Cow position:
               
chr21:36695832-36696041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
169-511
               

               
Cow position:
               
chr21:1511544-1511205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
132, 61
               

               
Conread position:
               
169-557
               

               
Cow position:
               
chr21:11644707-11645097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
7, 72
               

               
Conread position:
               
169-559
               

               
Cow position:
               
chr21:24858574-24858181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
126, 79
               

               
Conread position:
               
170-331
               

               
Cow position:
               
chr21:32536648-32536494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
132, 66
               

               
Conread position:
               
172-294
               

               
Cow position:
               
chr21:17929369-17929491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
173-341
               

               
Cow position:
               
chr21:36398314-36398474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
125, 59
               

               
Conread position:
               
174-347
               

               
Cow position:
               
chr21:19826474-19826300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
128, 80
               

               
Conread position:
               
174-361
               

               
Cow position:
               
chr21:7066132-7066313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
85, 63
               

               
Conread position:
               
175-286
               

               
Cow position:
               
chr21:42920748-42920860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
62, 81
               

               
Conread position:
               
175-335
               

               
Cow position:
               
chr21:34723063-34722903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
59, 23
               

               
Conread position:
               
175-337
               

               
Cow position:
               
chr21:40930224-40930383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
126, 65
               

               
Conread position:
               
175-342
               

               
Cow position:
               
chr21:37495692-37495859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
126, 52
               

               
Conread position:
               
175-347
               

               
Cow position:
               
chr21:45651209-45651378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
127, 23
               

               
Conread position:
               
175-360
               

               
Cow position:
               
chr21:29069071-29069258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
126, 79
               

               
Conread position:
               
175-370
               

               
Cow position:
               
chr21:11625998-11625802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
124, 85
               

               
Conread position:
               
175-370
               

               
Cow position:
               
chr21:16082860-16083059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
113, 85
               

               
Conread position:
               
175-370
               

               
Cow position:
               
chr21:28030531-28030348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
124, 26
               

               
Conread position:
               
175-409
               

               
Cow position:
               
chr21:47713755-47714001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 55
               

               
Conread position:
               
175-541
               

               
Cow position:
               
chr21:32559119-32559471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
37, 62
               

               
Conread position:
               
175-559
               

               
Cow position:
               
chr21:15584171-15584544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
127, 23
               

               
Conread position:
               
175-559
               

               
Cow position:
               
chr21:20160930-20160553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 22
               

               
Conread position:
               
175-559
               

               
Cow position:
               
chr21:23310702-23311078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
100, 85
               

               
Conread position:
               
175-566
               

               
Cow position:
               
chr21:17193496-17193897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 83
               

               
Conread position:
               
176-297
               

               
Cow position:
               
chr21:20185498-20185382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
176-300
               

               
Cow position:
               
chr21:42441881-42441758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
176-320
               

               
Cow position:
               
chr21:31258720-31258575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
125, 78
               

               
Conread position:
               
176-334
               

               
Cow position:
               
chr21:19180755-19180596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
176-339
               

               
Cow position:
               
chr21:8351043-8351204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
122, 69
               

               
Conread position:
               
176-347
               

               
Cow position:
               
chr21:42343951-42343783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
126, 43
               

               
Conread position:
               
176-356
               

               
Cow position:
               
chr21:19161966-19161785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
176-357
               

               
Cow position:
               
chr21:14746023-14745841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
176-359
               

               
Cow position:
               
chr21:24266310-24266496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
176-360
               

               
Cow position:
               
chr21:41287545-41287724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
125, 60
               

               
Conread position:
               
176-360
               

               
Cow position:
               
chr21:42017350-42017534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
59, 35
               

               
Conread position:
               
176-363
               

               
Cow position:
               
chr21:42355892-42355696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
53, 86
               

               
Conread position:
               
176-370
               

               
Cow position:
               
chr21:28237448-28237647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
76, 153
               

               
Conread position:
               
176-406
               

               
Cow position:
               
chr21:6317434-6317673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
176-409
               

               
Cow position:
               
chr21:14760808-14760576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
122, 35
               

               
Conread position:
               
176-546
               

               
Cow position:
               
chr21:10114082-10114446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
126, 66
               

               
Conread position:
               
176-563
               

               
Cow position:
               
chr21:34151827-34151446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
126, 25
               

               
Conread position:
               
177-300
               

               
Cow position:
               
chr21:47784845-47784723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
177-311
               

               
Cow position:
               
chr21:40916731-40916601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
121, 61
               

               
Conread position:
               
180-345
               

               
Cow position:
               
chr21:26454755-26454922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
119, 80
               

               
Conread position:
               
180-346
               

               
Cow position:
               
chr21:34049642-34049806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
122, 21
               

               
Conread position:
               
180-539
               

               
Cow position:
               
chr21:10410470-10410103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
125, 39
               

               
Conread position:
               
180-559
               

               
Cow position:
               
chr21:19767112-19766724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
7, 82
               

               
Conread position:
               
181-323
               

               
Cow position:
               
chr21:34727450-34727313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
181-360
               

               
Cow position:
               
chr21:17302752-17302572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
118, 82
               

               
Conread position:
               
181-367
               

               
Cow position:
               
chr21:7539279-7539463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
124, 79
               

               
Conread position:
               
181-543
               

               
Cow position:
               
chr21:3360770-3361129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 57
               

               
Conread position:
               
182-359
               

               
Cow position:
               
chr21:14360613-14360435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
120, 72
               

               
Conread position:
               
182-552
               

               
Cow position:
               
chr21:37789757-37790127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
120, 48
               

               
Conread position:
               
182-559
               

               
Cow position:
               
chr21:41198152-41198541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
120, 13
               

               
Conread position:
               
183-359
               

               
Cow position:
               
chr21:6955776-6955599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 137
               

               
Conread position:
               
183-360
               

               
Cow position:
               
chr21:10978703-10978879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
119, 26
               

               
Conread position:
               
184-345
               

               
Cow position:
               
chr21:16790230-16790061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
184-345
               

               
Cow position:
               
chr21:19014632-19014794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
118, 76
               

               
Conread position:
               
184-347
               

               
Cow position:
               
chr21:9341712-9341876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
118, 70
               

               
Conread position:
               
184-394
               

               
Cow position:
               
chr21:828967-829176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
114, 61
               

               
Conread position:
               
184-559
               

               
Cow position:
               
chr21:19195918-19196297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
118, 76
               

               
Conread position:
               
187-358
               

               
Cow position:
               
chr21:28191589-28191427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
187-359
               

               
Cow position:
               
chr21:8497363-8497536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
115, 66
               

               
Conread position:
               
187-393
               

               
Cow position:
               
chr21:8242155-8241947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
115, 67
               

               
Conread position:
               
188-370
               

               
Cow position:
               
chr21:7377684-7377867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
111, 65
               

               
Conread position:
               
189-311
               

               
Cow position:
               
chr21:41692291-41692168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
111, 65
               

               
Conread position:
               
189-547
               

               
Cow position:
               
chr21:6624397-6624036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
114, 70
               

               
Conread position:
               
190-559
               

               
Cow position:
               
chr21:42905158-42905508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
112, 70
               

               
Conread position:
               
192-348
               

               
Cow position:
               
chr21:31038023-31038185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 107
               

               
Conread position:
               
195-345
               

               
Cow position:
               
chr21:12640705-12640554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
107, 65
               

               
Conread position:
               
197-358
               

               
Cow position:
               
chr21:9346656-9346493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
46, 64
               

               
Conread position:
               
198-370
               

               
Cow position:
               
chr21:6735964-6736130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
101, 48
               

               
Conread position:
               
202-327
               

               
Cow position:
               
chr21:4043756-4043632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
99, 46
               

               
Conread position:
               
202-333
               

               
Cow position:
               
chr21:9590765-9590635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
99, 46
               

               
Conread position:
               
202-360
               

               
Cow position:
               
chr21:7768660-7768507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
99, 37
               

               
Conread position:
               
202-360
               

               
Cow position:
               
chr21:13043800-13043951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
95, 32
               

               
Conread position:
               
202-559
               

               
Cow position:
               
chr21:9416475-9416112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 40
               

               
Conread position:
               
202-559
               

               
Cow position:
               
chr21:42007234-42007590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
99, 57
               

               
Conread position:
               
209-559
               

               
Cow position:
               
chr21:21169275-21169625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
90, 45
               

               
Conread position:
               
211-537
               

               
Cow position:
               
chr21:45329738-45330056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
87, 37
               

               
Conread position:
               
211-559
               

               
Cow position:
               
chr21:9990727-9990382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
87, 29
               

               
Conread position:
               
212-356
               

               
Cow position:
               
chr21:713161-713015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
90, 47
               

               
Conread position:
               
220-370
               

               
Cow position:
               
chr21:31159605-31159461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
77, 33
               

               
Conread position:
               
220-390
               

               
Cow position:
               
chr21:41139308-41139480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
82, 34
               

               
Conread position:
               
223-520
               

               
Cow position:
               
chr21:13898372-13898090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
76, 36
               

               
Conread position:
               
224-359
               

               
Cow position:
               
chr21:43265185-43265325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
230-391
               

               
Cow position:
               
chr21:9334688-9334525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
72, 97
               

               
Conread position:
               
230-392
               

               
Cow position:
               
chr21:13164059-13163896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
230-525
               

               
Cow position:
               
chr21:26245114-26244824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
68, 29
               

               
Conread position:
               
230-559
               

               
Cow position:
               
chr21:10538055-10538393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
230-559
               

               
Cow position:
               
chr21:42384709-42384375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
69, 119
               

               
Conread position:
               
231-371
               

               
Cow position:
               
chr21:44592009-44592151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
231-559
               

               
Cow position:
               
chr21:39401781-39401464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
131, 28
               

               
Conread position:
               
232-558
               

               
Cow position:
               
chr21:37344900-37345231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
13, 195
               

               
Conread position:
               
233-544
               

               
Cow position:
               
chr21:2658006-2657704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
235-559
               

               
Cow position:
               
chr21:41598006-41597685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
67, 24
               

               
Conread position:
               
238-559
               

               
Cow position:
               
chr21:28989804-28989482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
241-546
               

               
Cow position:
               
chr21:15976821-15976517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
66, 18
               

               
Conread position:
               
241-559
               

               
Cow position:
               
chr21:32237469-32237167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
61, 90
               

               
Conread position:
               
247-359
               

               
Cow position:
               
chr21:8686960-8687073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
255-368
               

               
Cow position:
               
chr21:38953607-38953490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
266-409
               

               
Cow position:
               
chr21:46972985-46973129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
36, 117
               

               
Conread position:
               
280-566
               

               
Cow position:
               
chr21:24888149-24887871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
304-546
               

               
Cow position:
               
chr21:5636595-5636838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 134
               

               
Conread position:
               
311-554
               

               
Cow position:
               
chr21:24607504-24607260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
72, 99
               

               
Conread position:
               
361-559
               

               
Cow position:
               
chr21:42913694-42913876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
437-554
               

               
Cow position:
               
chr21:42348684-42348803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
437-558
               

               
Cow position:
               
chr21:13488512-13488390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 72
               

               
Conread position:
               
437-559
               

               
Cow position:
               
chr21:18494959-18494835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
437-559
               

               
Cow position:
               
chr21:20925516-20925637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
48, 92
               

               
Conread position:
               
437-559
               

               
Cow position:
               
chr21:28512519-28512402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
437-559
               

               
Cow position:
               
chr21:33210192-33210068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
437-559
               

               
Cow position:
               
chr21:43357268-43357394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
437-559
               

               
Cow position:
               
chr21:45330611-45330738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
437-559
               

               
Cow position:
               
chr21:47802267-47802390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
40, 94
               

               
Conread position:
               
437-572
               

               
Cow position:
               
chr21:911977-912110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 41
               

               
Conread position:
               
441-559
               

               
Cow position:
               
chr21:21223279-21223159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
441-559
               

               
Cow position:
               
chr21:29002172-29002292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               
Show alignments to all cow chromosomes.