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Cow genome map

           
Conread name:
           
Ss1.1-Pla1-C0000032_A06.5
        

               
Conread position:
               
1-103
               

               
Cow position:
               
chr28:8347960-8347858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr28:32203491-32203223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
3-111
               

               
Cow position:
               
chr28:4375402-4375510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
9-99
               

               
Cow position:
               
chr28:4077119-4077209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
89-546
               

               
Cow position:
               
chr28:25973822-25973354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 75
               

               
Conread position:
               
96-361
               

               
Cow position:
               
chr28:21046317-21046567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 23
               

               
Conread position:
               
99-549
               

               
Cow position:
               
chr28:14720517-14720956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
40, 56
               

               
Conread position:
               
101-350
               

               
Cow position:
               
chr28:4027196-4027442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
106-521
               

               
Cow position:
               
chr28:10057326-10057745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
110, 48
               

               
Conread position:
               
107-559
               

               
Cow position:
               
chr28:22133174-22132738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 130
               

               
Conread position:
               
111-347
               

               
Cow position:
               
chr28:34464172-34463937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
191, 9
               

               
Conread position:
               
112-558
               

               
Cow position:
               
chr28:4071214-4070781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
6, 33
               

               
Conread position:
               
115-320
               

               
Cow position:
               
chr28:4231062-4230861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
190, 46
               

               
Conread position:
               
124-559
               

               
Cow position:
               
chr28:10053087-10053527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
125-348
               

               
Cow position:
               
chr28:2077746-2077522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
11, 117
               

               
Conread position:
               
125-535
               

               
Cow position:
               
chr28:29988865-29989281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
126-558
               

               
Cow position:
               
chr28:10615708-10616139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr28:6301325-6301117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 127
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr28:14998306-14998090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 98
               

               
Conread position:
               
128-374
               

               
Cow position:
               
chr28:3725970-3726212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
129-247
               

               
Cow position:
               
chr28:10528719-10528837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
129-318
               

               
Cow position:
               
chr28:4588555-4588370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
8, 56
               

               
Conread position:
               
132-347
               

               
Cow position:
               
chr28:28602988-28602775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
170, 22
               

               
Conread position:
               
134-335
               

               
Cow position:
               
chr28:26867921-26868116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
162, 33
               

               
Conread position:
               
134-393
               

               
Cow position:
               
chr28:1532240-1531984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
168, 100
               

               
Conread position:
               
135-280
               

               
Cow position:
               
chr28:13194458-13194601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
135-347
               

               
Cow position:
               
chr28:7885272-7885053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
21, 5
               

               
Conread position:
               
135-370
               

               
Cow position:
               
chr28:19015934-19015716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
167, 57
               

               
Conread position:
               
136-340
               

               
Cow position:
               
chr28:9677898-9677699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
136-345
               

               
Cow position:
               
chr28:11743594-11743795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
17, 9
               

               
Conread position:
               
137-345
               

               
Cow position:
               
chr28:1654860-1655069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
165, 32
               

               
Conread position:
               
137-347
               

               
Cow position:
               
chr28:7132152-7132359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
165, 8
               

               
Conread position:
               
137-503
               

               
Cow position:
               
chr28:22332762-22332400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
45, 6
               

               
Conread position:
               
138-325
               

               
Cow position:
               
chr28:3759226-3759034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
104, 20
               

               
Conread position:
               
139-388
               

               
Cow position:
               
chr28:13245789-13245542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
163, 15
               

               
Conread position:
               
140-361
               

               
Cow position:
               
chr28:11411309-11411527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
23, 92
               

               
Conread position:
               
140-361
               

               
Cow position:
               
chr28:13133863-13133641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
161, 120
               

               
Conread position:
               
141-311
               

               
Cow position:
               
chr28:18847786-18847616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
138, 21
               

               
Conread position:
               
141-349
               

               
Cow position:
               
chr28:32372461-32372266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
158, 13
               

               
Conread position:
               
141-370
               

               
Cow position:
               
chr28:8304468-8304247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
160, 21
               

               
Conread position:
               
141-541
               

               
Cow position:
               
chr28:7697752-7698154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 113
               

               
Conread position:
               
141-559
               

               
Cow position:
               
chr28:30293359-30293778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
161, 50
               

               
Conread position:
               
142-246
               

               
Cow position:
               
chr28:20614325-20614429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
142-318
               

               
Cow position:
               
chr28:16159644-16159819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
158, 110
               

               
Conread position:
               
142-340
               

               
Cow position:
               
chr28:21744939-21744745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
14, 92
               

               
Conread position:
               
142-347
               

               
Cow position:
               
chr28:3678586-3678385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
34, 93
               

               
Conread position:
               
142-554
               

               
Cow position:
               
chr28:10681592-10682002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
38, 115
               

               
Conread position:
               
142-559
               

               
Cow position:
               
chr28:16204106-16204521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
102, 13
               

               
Conread position:
               
143-314
               

               
Cow position:
               
chr28:24767634-24767460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
20, 113
               

               
Conread position:
               
143-332
               

               
Cow position:
               
chr28:29500630-29500438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
87, 26
               

               
Conread position:
               
143-343
               

               
Cow position:
               
chr28:20281975-20281785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
22, 48
               

               
Conread position:
               
143-347
               

               
Cow position:
               
chr28:19395087-19394898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
143-359
               

               
Cow position:
               
chr28:13448338-13448134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
159, 11
               

               
Conread position:
               
143-360
               

               
Cow position:
               
chr28:19127946-19128159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
19, 112
               

               
Conread position:
               
143-361
               

               
Cow position:
               
chr28:3143658-3143866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
11, 93
               

               
Conread position:
               
143-361
               

               
Cow position:
               
chr28:4937015-4937233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
159, 25
               

               
Conread position:
               
143-365
               

               
Cow position:
               
chr28:32015010-32014789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 99
               

               
Conread position:
               
143-540
               

               
Cow position:
               
chr28:28631966-28631551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
52, 18
               

               
Conread position:
               
143-544
               

               
Cow position:
               
chr28:14151450-14151061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
159, 8
               

               
Conread position:
               
143-560
               

               
Cow position:
               
chr28:15272042-15272450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
9, 120
               

               
Conread position:
               
144-275
               

               
Cow position:
               
chr28:19345703-19345574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
144-338
               

               
Cow position:
               
chr28:24698914-24698722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
154, 14
               

               
Conread position:
               
144-342
               

               
Cow position:
               
chr28:19586393-19586195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
156, 14
               

               
Conread position:
               
144-345
               

               
Cow position:
               
chr28:28903335-28903534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
158, 104
               

               
Conread position:
               
144-347
               

               
Cow position:
               
chr28:1178096-1178301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
107, 17
               

               
Conread position:
               
144-359
               

               
Cow position:
               
chr28:25827502-25827720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
13, 112
               

               
Conread position:
               
144-400
               

               
Cow position:
               
chr28:14242920-14242663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
137, 85
               

               
Conread position:
               
144-559
               

               
Cow position:
               
chr28:5236370-5236791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 123
               

               
Conread position:
               
145-273
               

               
Cow position:
               
chr28:26949719-26949848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
145-281
               

               
Cow position:
               
chr28:6124037-6124171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
145-295
               

               
Cow position:
               
chr28:5428531-5428677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
25, 52
               

               
Conread position:
               
145-323
               

               
Cow position:
               
chr28:21118903-21118724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
157, 117
               

               
Conread position:
               
145-326
               

               
Cow position:
               
chr28:9639872-9639694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
153, 13
               

               
Conread position:
               
145-330
               

               
Cow position:
               
chr28:17737927-17738113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
157, 109
               

               
Conread position:
               
145-334
               

               
Cow position:
               
chr28:25805925-25806115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
157, 109
               

               
Conread position:
               
145-339
               

               
Cow position:
               
chr28:5577756-5577560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
145-339
               

               
Cow position:
               
chr28:11562020-11562215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
157, 109
               

               
Conread position:
               
145-344
               

               
Cow position:
               
chr28:11305410-11305606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 97
               

               
Conread position:
               
145-347
               

               
Cow position:
               
chr28:2892479-2892275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
145-347
               

               
Cow position:
               
chr28:13356143-13356349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
86, 110
               

               
Conread position:
               
145-347
               

               
Cow position:
               
chr28:18761785-18761980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
145-359
               

               
Cow position:
               
chr28:5402818-5403031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
12, 111
               

               
Conread position:
               
145-359
               

               
Cow position:
               
chr28:15362800-15362590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 13
               

               
Conread position:
               
145-360
               

               
Cow position:
               
chr28:3137775-3137553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
128, 23
               

               
Conread position:
               
145-361
               

               
Cow position:
               
chr28:2524165-2523952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
157, 50
               

               
Conread position:
               
145-361
               

               
Cow position:
               
chr28:4022893-4022682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 9
               

               
Conread position:
               
145-369
               

               
Cow position:
               
chr28:21008447-21008664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
20, 53
               

               
Conread position:
               
145-370
               

               
Cow position:
               
chr28:3449532-3449303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
145, 96
               

               
Conread position:
               
145-370
               

               
Cow position:
               
chr28:4163357-4163579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 109
               

               
Conread position:
               
145-370
               

               
Cow position:
               
chr28:5630322-5630098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
145-370
               

               
Cow position:
               
chr28:6563671-6563898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 109
               

               
Conread position:
               
145-370
               

               
Cow position:
               
chr28:7014677-7014453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
157, 101
               

               
Conread position:
               
145-533
               

               
Cow position:
               
chr28:12964804-12964405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
83, 23
               

               
Conread position:
               
145-558
               

               
Cow position:
               
chr28:11866445-11866858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 85
               

               
Conread position:
               
145-558
               

               
Cow position:
               
chr28:28765680-28766097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 46
               

               
Conread position:
               
145-559
               

               
Cow position:
               
chr28:5818061-5817658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 82
               

               
Conread position:
               
145-574
               

               
Cow position:
               
chr28:16918954-16919367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
156, 17
               

               
Conread position:
               
146-322
               

               
Cow position:
               
chr28:7504103-7503926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
156, 104
               

               
Conread position:
               
147-254
               

               
Cow position:
               
chr28:29027692-29027580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
147-347
               

               
Cow position:
               
chr28:5609696-5609894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
14, 96
               

               
Conread position:
               
147-359
               

               
Cow position:
               
chr28:23262229-23262441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
155, 107
               

               
Conread position:
               
148-325
               

               
Cow position:
               
chr28:26304286-26304108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
154, 50
               

               
Conread position:
               
148-371
               

               
Cow position:
               
chr28:24064674-24064896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
89, 14
               

               
Conread position:
               
148-558
               

               
Cow position:
               
chr28:25700650-25701049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
154, 48
               

               
Conread position:
               
148-559
               

               
Cow position:
               
chr28:10845322-10844930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
237, 63
               

               
Conread position:
               
150-335
               

               
Cow position:
               
chr28:4089842-4090023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
148, 26
               

               
Conread position:
               
150-507
               

               
Cow position:
               
chr28:22571466-22571804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
153, 41
               

               
Conread position:
               
151-284
               

               
Cow position:
               
chr28:22339590-22339459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
151-293
               

               
Cow position:
               
chr28:22170066-22170199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
151-298
               

               
Cow position:
               
chr28:23841550-23841414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
151-304
               

               
Cow position:
               
chr28:22274195-22274042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-311
               

               
Cow position:
               
chr28:3257207-3257047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
150, 99
               

               
Conread position:
               
151-332
               

               
Cow position:
               
chr28:18791251-18791077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
147, 95
               

               
Conread position:
               
151-335
               

               
Cow position:
               
chr28:8827382-8827195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
6, 109
               

               
Conread position:
               
151-343
               

               
Cow position:
               
chr28:8936364-8936177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
150, 16
               

               
Conread position:
               
151-343
               

               
Cow position:
               
chr28:13048068-13048257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
151, 32
               

               
Conread position:
               
151-347
               

               
Cow position:
               
chr28:5103370-5103565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
151-347
               

               
Cow position:
               
chr28:9705871-9705676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
59, 7
               

               
Conread position:
               
151-347
               

               
Cow position:
               
chr28:17620142-17620337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
149, 103
               

               
Conread position:
               
151-355
               

               
Cow position:
               
chr28:11827905-11827703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
151, 100
               

               
Conread position:
               
151-356
               

               
Cow position:
               
chr28:26265047-26264841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
151, 102
               

               
Conread position:
               
151-356
               

               
Cow position:
               
chr28:32593419-32593623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
103, 18
               

               
Conread position:
               
151-357
               

               
Cow position:
               
chr28:10298056-10297868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
148, 45
               

               
Conread position:
               
151-358
               

               
Cow position:
               
chr28:17748184-17748388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
151, 32
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr28:12088428-12088637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
11, 104
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr28:23650007-23650221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
6, 108
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr28:33561583-33561376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
151, 108
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr28:34786780-34786571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-360
               

               
Cow position:
               
chr28:7350865-7350664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
150, 16
               

               
Conread position:
               
151-370
               

               
Cow position:
               
chr28:1315330-1315552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 105
               

               
Conread position:
               
151-380
               

               
Cow position:
               
chr28:5255086-5254864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
147, 18
               

               
Conread position:
               
151-390
               

               
Cow position:
               
chr28:4007001-4006765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
25, 131
               

               
Conread position:
               
151-480
               

               
Cow position:
               
chr28:11307301-11307619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
116, 50
               

               
Conread position:
               
151-509
               

               
Cow position:
               
chr28:9812501-9812142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
13, 113
               

               
Conread position:
               
151-525
               

               
Cow position:
               
chr28:8359117-8358747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-525
               

               
Cow position:
               
chr28:24693495-24693118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
151, 36
               

               
Conread position:
               
151-527
               

               
Cow position:
               
chr28:4307676-4308065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 371
               

               
Conread position:
               
151-536
               

               
Cow position:
               
chr28:1632428-1632823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
151-545
               

               
Cow position:
               
chr28:4159178-4158781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
83, 7
               

               
Conread position:
               
151-546
               

               
Cow position:
               
chr28:5224919-5224537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
59, 17
               

               
Conread position:
               
151-549
               

               
Cow position:
               
chr28:1383054-1383453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
26, 16
               

               
Conread position:
               
151-555
               

               
Cow position:
               
chr28:16416862-16416455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 104
               

               
Conread position:
               
151-559
               

               
Cow position:
               
chr28:3492570-3492972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
147, 85
               

               
Conread position:
               
151-559
               

               
Cow position:
               
chr28:5144297-5144710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 7
               

               
Conread position:
               
151-559
               

               
Cow position:
               
chr28:19055234-19054828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
149, 103
               

               
Conread position:
               
151-559
               

               
Cow position:
               
chr28:24966601-24966204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
131, 17
               

               
Conread position:
               
152-306
               

               
Cow position:
               
chr28:22278408-22278567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
152-361
               

               
Cow position:
               
chr28:11398578-11398788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 108
               

               
Conread position:
               
152-390
               

               
Cow position:
               
chr28:12662173-12662423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
5, 116
               

               
Conread position:
               
154-370
               

               
Cow position:
               
chr28:26943938-26944159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
148, 100
               

               
Conread position:
               
154-517
               

               
Cow position:
               
chr28:10495086-10495426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
148, 33
               

               
Conread position:
               
154-558
               

               
Cow position:
               
chr28:18625450-18625035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
148, 21
               

               
Conread position:
               
155-346
               

               
Cow position:
               
chr28:4870583-4870781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
155-356
               

               
Cow position:
               
chr28:26820063-26820264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
81, 108
               

               
Conread position:
               
155-361
               

               
Cow position:
               
chr28:6283277-6283479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
147, 51
               

               
Conread position:
               
155-370
               

               
Cow position:
               
chr28:5441685-5441897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
100, 14
               

               
Conread position:
               
155-525
               

               
Cow position:
               
chr28:10606426-10606788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
147, 13
               

               
Conread position:
               
155-558
               

               
Cow position:
               
chr28:5684913-5684522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
143, 90
               

               
Conread position:
               
156-261
               

               
Cow position:
               
chr28:3448753-3448649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
156-347
               

               
Cow position:
               
chr28:34655220-34655028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
146, 98
               

               
Conread position:
               
156-348
               

               
Cow position:
               
chr28:32179909-32179717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 6
               

               
Conread position:
               
156-359
               

               
Cow position:
               
chr28:2775262-2775058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
146, 97
               

               
Conread position:
               
157-320
               

               
Cow position:
               
chr28:3494572-3494405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
157-360
               

               
Cow position:
               
chr28:4013294-4013094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
140, 81
               

               
Conread position:
               
158-264
               

               
Cow position:
               
chr28:508180-508072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
158-278
               

               
Cow position:
               
chr28:27941571-27941689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
158-291
               

               
Cow position:
               
chr28:10896450-10896316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
84, 11
               

               
Conread position:
               
158-306
               

               
Cow position:
               
chr28:18740286-18740427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
144, 73
               

               
Conread position:
               
158-311
               

               
Cow position:
               
chr28:23676526-23676372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-314
               

               
Cow position:
               
chr28:3311011-3311168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
20, 10
               

               
Conread position:
               
158-314
               

               
Cow position:
               
chr28:19530031-19530185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
144, 17
               

               
Conread position:
               
158-315
               

               
Cow position:
               
chr28:15411891-15411736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
144, 73
               

               
Conread position:
               
158-325
               

               
Cow position:
               
chr28:11828750-11828918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
143, 9
               

               
Conread position:
               
158-330
               

               
Cow position:
               
chr28:16200530-16200703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-338
               

               
Cow position:
               
chr28:26960703-26960877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
144, 82
               

               
Conread position:
               
158-345
               

               
Cow position:
               
chr28:4876648-4876468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
140, 78
               

               
Conread position:
               
158-346
               

               
Cow position:
               
chr28:2777740-2777554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
140, 78
               

               
Conread position:
               
158-346
               

               
Cow position:
               
chr28:9109422-9109240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
8, 90
               

               
Conread position:
               
158-346
               

               
Cow position:
               
chr28:11239103-11239296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
62, 10
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr28:10959008-10958825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
144, 10
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr28:13370930-13371124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
123, 9
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr28:24887805-24887615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
144, 93
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr28:29498795-29498985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
144, 90
               

               
Conread position:
               
158-348
               

               
Cow position:
               
chr28:8898265-8898066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
8, 111
               

               
Conread position:
               
158-353
               

               
Cow position:
               
chr28:27445365-27445556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
113, 84
               

               
Conread position:
               
158-354
               

               
Cow position:
               
chr28:6053494-6053287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
158-356
               

               
Cow position:
               
chr28:5674082-5673889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
109, 80
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr28:4440509-4440307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr28:12974094-12973892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr28:21779389-21779190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
144, 43
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr28:28561108-28560907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
144, 37
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr28:117548-117754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 97
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr28:11759351-11759554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
143, 93
               

               
Conread position:
               
158-370
               

               
Cow position:
               
chr28:3445268-3445481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 80
               

               
Conread position:
               
158-370
               

               
Cow position:
               
chr28:5200037-5199820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-370
               

               
Cow position:
               
chr28:6358200-6358414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
158-371
               

               
Cow position:
               
chr28:4873114-4873346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
158-383
               

               
Cow position:
               
chr28:16544204-16543982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
85, 95
               

               
Conread position:
               
158-392
               

               
Cow position:
               
chr28:23296529-23296295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
141, 87
               

               
Conread position:
               
158-409
               

               
Cow position:
               
chr28:118824-118570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 97
               

               
Conread position:
               
158-409
               

               
Cow position:
               
chr28:7131883-7132130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
143, 11
               

               
Conread position:
               
158-487
               

               
Cow position:
               
chr28:3484796-3484459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
124, 91
               

               
Conread position:
               
158-523
               

               
Cow position:
               
chr28:7439449-7439090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
194, 95
               

               
Conread position:
               
158-536
               

               
Cow position:
               
chr28:8291622-8291266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
240, 9
               

               
Conread position:
               
158-540
               

               
Cow position:
               
chr28:9426142-9426520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 77
               

               
Conread position:
               
158-556
               

               
Cow position:
               
chr28:4643561-4643949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 10
               

               
Conread position:
               
158-557
               

               
Cow position:
               
chr28:4881039-4881431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
141, 29
               

               
Conread position:
               
158-557
               

               
Cow position:
               
chr28:8787748-8787360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
138, 10
               

               
Conread position:
               
158-557
               

               
Cow position:
               
chr28:27218534-27218134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 11
               

               
Conread position:
               
158-558
               

               
Cow position:
               
chr28:5436876-5437279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 90
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr28:4884044-4884455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
143, 9
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr28:8347944-8347546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 103
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr28:12598546-12598157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
144, 72
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr28:20124991-20124597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
140, 71
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr28:21845161-21844767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
143, 37
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr28:25727580-25727189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
7, 35
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr28:34877762-34878161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
70, 122
               

               
Conread position:
               
158-560
               

               
Cow position:
               
chr28:1838208-1837801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
7, 165
               

               
Conread position:
               
158-572
               

               
Cow position:
               
chr28:9100138-9099734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 29
               

               
Conread position:
               
159-270
               

               
Cow position:
               
chr28:14934209-14934098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
96, 88
               

               
Conread position:
               
159-311
               

               
Cow position:
               
chr28:14947925-14947774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
159-314
               

               
Cow position:
               
chr28:14657925-14657769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
159-319
               

               
Cow position:
               
chr28:13195541-13195700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
143, 49
               

               
Conread position:
               
159-327
               

               
Cow position:
               
chr28:28501450-28501274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
159-333
               

               
Cow position:
               
chr28:1490181-1490356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
143, 103
               

               
Conread position:
               
159-345
               

               
Cow position:
               
chr28:11798567-11798754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
143, 108
               

               
Conread position:
               
159-345
               

               
Cow position:
               
chr28:12628947-12628761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
143, 15
               

               
Conread position:
               
159-345
               

               
Cow position:
               
chr28:18474860-18474672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 104
               

               
Conread position:
               
159-346
               

               
Cow position:
               
chr28:7964469-7964654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
142, 92
               

               
Conread position:
               
159-346
               

               
Cow position:
               
chr28:17948910-17949089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
142, 10
               

               
Conread position:
               
159-346
               

               
Cow position:
               
chr28:23728101-23728275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
143, 10
               

               
Conread position:
               
159-347
               

               
Cow position:
               
chr28:10196661-10196842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
129, 66
               

               
Conread position:
               
159-348
               

               
Cow position:
               
chr28:17357815-17358012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
159-348
               

               
Cow position:
               
chr28:20174046-20173861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
107, 8
               

               
Conread position:
               
159-354
               

               
Cow position:
               
chr28:2825630-2825435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
143, 25
               

               
Conread position:
               
159-354
               

               
Cow position:
               
chr28:18928755-18928951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
159-360
               

               
Cow position:
               
chr28:5152824-5152611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
85, 42
               

               
Conread position:
               
159-361
               

               
Cow position:
               
chr28:7644953-7644749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
159-361
               

               
Cow position:
               
chr28:11059700-11059510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
143, 77
               

               
Conread position:
               
159-364
               

               
Cow position:
               
chr28:26826431-26826224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
159-370
               

               
Cow position:
               
chr28:19564026-19564228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
142, 85
               

               
Conread position:
               
159-371
               

               
Cow position:
               
chr28:20759484-20759702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
159-389
               

               
Cow position:
               
chr28:32358312-32358088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
139, 9
               

               
Conread position:
               
159-408
               

               
Cow position:
               
chr28:2801436-2801182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
159-477
               

               
Cow position:
               
chr28:3011058-3011381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 95
               

               
Conread position:
               
159-510
               

               
Cow position:
               
chr28:27161108-27161472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
72, 9
               

               
Conread position:
               
159-558
               

               
Cow position:
               
chr28:4834634-4835033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
148, 52
               

               
Conread position:
               
159-559
               

               
Cow position:
               
chr28:21103611-21104036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
70, 108
               

               
Conread position:
               
159-559
               

               
Cow position:
               
chr28:23616614-23616214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
257, 108
               

               
Conread position:
               
160-318
               

               
Cow position:
               
chr28:21263361-21263209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
142, 7
               

               
Conread position:
               
160-331
               

               
Cow position:
               
chr28:11309886-11310061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
160-335
               

               
Cow position:
               
chr28:25518548-25518729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
160-359
               

               
Cow position:
               
chr28:11814871-11815067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
142, 78
               

               
Conread position:
               
160-359
               

               
Cow position:
               
chr28:19361947-19361747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
142, 93
               

               
Conread position:
               
160-559
               

               
Cow position:
               
chr28:23460352-23459956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
278, 88
               

               
Conread position:
               
161-292
               

               
Cow position:
               
chr28:16964757-16964887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
161-311
               

               
Cow position:
               
chr28:5262726-5262574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-345
               

               
Cow position:
               
chr28:11006933-11006751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
141, 35
               

               
Conread position:
               
161-345
               

               
Cow position:
               
chr28:14710546-14710366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
141, 37
               

               
Conread position:
               
161-347
               

               
Cow position:
               
chr28:31223350-31223538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
138, 98
               

               
Conread position:
               
161-348
               

               
Cow position:
               
chr28:22085339-22085520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
141, 14
               

               
Conread position:
               
161-359
               

               
Cow position:
               
chr28:5232147-5231949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 95
               

               
Conread position:
               
161-359
               

               
Cow position:
               
chr28:17656622-17656430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
141, 15
               

               
Conread position:
               
161-361
               

               
Cow position:
               
chr28:33322657-33322466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
141, 8
               

               
Conread position:
               
161-409
               

               
Cow position:
               
chr28:7557522-7557777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
161-546
               

               
Cow position:
               
chr28:24367735-24368115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
202, 101
               

               
Conread position:
               
161-546
               

               
Cow position:
               
chr28:26340541-26340161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-559
               

               
Cow position:
               
chr28:10669794-10669386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
138, 93
               

               
Conread position:
               
161-574
               

               
Cow position:
               
chr28:33884610-33884207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
16, 81
               

               
Conread position:
               
162-244
               

               
Cow position:
               
chr28:5929191-5929109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
83
               

               
Alignm identity:
               
75
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
162-297
               

               
Cow position:
               
chr28:5294796-5294927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
162-314
               

               
Cow position:
               
chr28:13174348-13174500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
140, 72
               

               
Conread position:
               
162-319
               

               
Cow position:
               
chr28:16252202-16252354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
145, 76
               

               
Conread position:
               
162-326
               

               
Cow position:
               
chr28:8655959-8656122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
6, 57
               

               
Conread position:
               
162-343
               

               
Cow position:
               
chr28:30385361-30385180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
140, 98
               

               
Conread position:
               
162-347
               

               
Cow position:
               
chr28:777881-777698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
121, 6
               

               
Conread position:
               
162-347
               

               
Cow position:
               
chr28:3423983-3423800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
140, 95
               

               
Conread position:
               
162-348
               

               
Cow position:
               
chr28:5273219-5273408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
19, 94
               

               
Conread position:
               
162-354
               

               
Cow position:
               
chr28:5552501-5552699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
162-357
               

               
Cow position:
               
chr28:17680830-17680635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 6
               

               
Conread position:
               
162-360
               

               
Cow position:
               
chr28:7008775-7008968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
142, 72
               

               
Conread position:
               
162-360
               

               
Cow position:
               
chr28:19217018-19216832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
139, 63
               

               
Conread position:
               
162-361
               

               
Cow position:
               
chr28:10480597-10480802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
70, 94
               

               
Conread position:
               
162-370
               

               
Cow position:
               
chr28:5236080-5235881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
139, 78
               

               
Conread position:
               
162-370
               

               
Cow position:
               
chr28:8259839-8259627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
162-370
               

               
Cow position:
               
chr28:13527404-13527195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
122, 33
               

               
Conread position:
               
162-370
               

               
Cow position:
               
chr28:34843366-34843572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
140, 99
               

               
Conread position:
               
162-495
               

               
Cow position:
               
chr28:11346283-11346612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
140, 74
               

               
Conread position:
               
162-520
               

               
Cow position:
               
chr28:12951622-12951276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 70
               

               
Conread position:
               
162-523
               

               
Cow position:
               
chr28:11422613-11422966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
98, 34
               

               
Conread position:
               
162-558
               

               
Cow position:
               
chr28:29416519-29416904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
220, 112
               

               
Conread position:
               
162-559
               

               
Cow position:
               
chr28:26982530-26982935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 67
               

               
Conread position:
               
162-559
               

               
Cow position:
               
chr28:27313523-27313937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
140, 92
               

               
Conread position:
               
163-269
               

               
Cow position:
               
chr28:12644682-12644576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
163-297
               

               
Cow position:
               
chr28:8165008-8165141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
163-344
               

               
Cow position:
               
chr28:32284035-32284215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
91, 117
               

               
Conread position:
               
163-344
               

               
Cow position:
               
chr28:34830359-34830181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
139, 33
               

               
Conread position:
               
163-357
               

               
Cow position:
               
chr28:659082-659282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
81, 64
               

               
Conread position:
               
163-361
               

               
Cow position:
               
chr28:6322023-6321826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
63, 12
               

               
Conread position:
               
163-370
               

               
Cow position:
               
chr28:30902326-30902126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
138, 77
               

               
Conread position:
               
163-371
               

               
Cow position:
               
chr28:19038813-19039020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
138, 85
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr28:4282284-4282680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 96
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr28:24996413-24996777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
40, 71
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr28:34230436-34230041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 97
               

               
Conread position:
               
163-564
               

               
Cow position:
               
chr28:23531068-23530671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
140, 32
               

               
Conread position:
               
164-279
               

               
Cow position:
               
chr28:9919965-9920077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
164-325
               

               
Cow position:
               
chr28:16419729-16419570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
138, 27
               

               
Conread position:
               
164-325
               

               
Cow position:
               
chr28:30921853-30922016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
138, 96
               

               
Conread position:
               
164-333
               

               
Cow position:
               
chr28:4077133-4077309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
70, 102
               

               
Conread position:
               
164-336
               

               
Cow position:
               
chr28:17740029-17739856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
137, 90
               

               
Conread position:
               
164-343
               

               
Cow position:
               
chr28:21766159-21765982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
138, 31
               

               
Conread position:
               
164-345
               

               
Cow position:
               
chr28:6934972-6935154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
138, 96
               

               
Conread position:
               
164-359
               

               
Cow position:
               
chr28:26215972-26215776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
137, 90
               

               
Conread position:
               
164-370
               

               
Cow position:
               
chr28:5138795-5138991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
164-370
               

               
Cow position:
               
chr28:8396529-8396335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
137, 20
               

               
Conread position:
               
164-374
               

               
Cow position:
               
chr28:10252711-10252921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
139, 95
               

               
Conread position:
               
164-506
               

               
Cow position:
               
chr28:19262380-19262727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
138, 90
               

               
Conread position:
               
164-558
               

               
Cow position:
               
chr28:9636253-9636644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
37, 71
               

               
Conread position:
               
164-559
               

               
Cow position:
               
chr28:21868661-21868263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
137, 74
               

               
Conread position:
               
165-347
               

               
Cow position:
               
chr28:12933533-12933707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
137, 31
               

               
Conread position:
               
166-551
               

               
Cow position:
               
chr28:15601476-15601081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
136, 44
               

               
Conread position:
               
167-314
               

               
Cow position:
               
chr28:7523214-7523360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
135, 92
               

               
Conread position:
               
167-337
               

               
Cow position:
               
chr28:657263-657443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
167-344
               

               
Cow position:
               
chr28:7413864-7413685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
167-347
               

               
Cow position:
               
chr28:10890541-10890712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
130, 74
               

               
Conread position:
               
167-359
               

               
Cow position:
               
chr28:3200663-3200470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
132, 93
               

               
Conread position:
               
167-361
               

               
Cow position:
               
chr28:8716179-8716378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
84, 193
               

               
Conread position:
               
167-361
               

               
Cow position:
               
chr28:19994745-19994937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
104, 86
               

               
Conread position:
               
167-364
               

               
Cow position:
               
chr28:1645965-1646156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
104, 29
               

               
Conread position:
               
167-370
               

               
Cow position:
               
chr28:18770288-18770083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
167-391
               

               
Cow position:
               
chr28:4186104-4185886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
135, 65
               

               
Conread position:
               
167-537
               

               
Cow position:
               
chr28:24672469-24672099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
131, 93
               

               
Conread position:
               
167-558
               

               
Cow position:
               
chr28:3023715-3024099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
39, 80
               

               
Conread position:
               
167-559
               

               
Cow position:
               
chr28:751429-751036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 87
               

               
Conread position:
               
167-559
               

               
Cow position:
               
chr28:3746398-3746013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
134, 65
               

               
Conread position:
               
167-559
               

               
Cow position:
               
chr28:9285176-9285566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
135, 62
               

               
Conread position:
               
167-559
               

               
Cow position:
               
chr28:34430222-34430615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
261, 95
               

               
Conread position:
               
168-342
               

               
Cow position:
               
chr28:16856906-16857075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
134, 83
               

               
Conread position:
               
168-347
               

               
Cow position:
               
chr28:24082470-24082293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
133, 72
               

               
Conread position:
               
168-359
               

               
Cow position:
               
chr28:28810156-28809966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
134, 86
               

               
Conread position:
               
168-361
               

               
Cow position:
               
chr28:20968376-20968571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
168-546
               

               
Cow position:
               
chr28:22308844-22308474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
134, 92
               

               
Conread position:
               
169-361
               

               
Cow position:
               
chr28:4074176-4073978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
87, 74
               

               
Conread position:
               
169-377
               

               
Cow position:
               
chr28:15295437-15295229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 72
               

               
Conread position:
               
169-546
               

               
Cow position:
               
chr28:3406213-3406609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
133, 91
               

               
Conread position:
               
170-336
               

               
Cow position:
               
chr28:4227675-4227510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
9, 47
               

               
Conread position:
               
170-361
               

               
Cow position:
               
chr28:23579100-23578910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
132, 101
               

               
Conread position:
               
170-390
               

               
Cow position:
               
chr28:27721894-27721683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
138, 90
               

               
Conread position:
               
174-356
               

               
Cow position:
               
chr28:26530673-26530852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
122, 60
               

               
Conread position:
               
174-390
               

               
Cow position:
               
chr28:11057849-11058063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
7, 89
               

               
Conread position:
               
175-311
               

               
Cow position:
               
chr28:22182940-22183082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
175-370
               

               
Cow position:
               
chr28:4046037-4045848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
122, 57
               

               
Conread position:
               
175-370
               

               
Cow position:
               
chr28:18797503-18797320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
133, 50
               

               
Conread position:
               
175-382
               

               
Cow position:
               
chr28:2821454-2821242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
127, 85
               

               
Conread position:
               
175-548
               

               
Cow position:
               
chr28:7267756-7268117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
126, 71
               

               
Conread position:
               
176-302
               

               
Cow position:
               
chr28:8141850-8141725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
23, 35
               

               
Conread position:
               
176-339
               

               
Cow position:
               
chr28:19118164-19118000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
126, 86
               

               
Conread position:
               
176-340
               

               
Cow position:
               
chr28:26269591-26269416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 93
               

               
Conread position:
               
176-347
               

               
Cow position:
               
chr28:18608173-18608345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
176-355
               

               
Cow position:
               
chr28:12672269-12672450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
108, 84
               

               
Conread position:
               
176-359
               

               
Cow position:
               
chr28:17071532-17071348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
123, 78
               

               
Conread position:
               
176-361
               

               
Cow position:
               
chr28:20013644-20013444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
176-362
               

               
Cow position:
               
chr28:13160351-13160539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
126, 91
               

               
Conread position:
               
176-370
               

               
Cow position:
               
chr28:16879760-16879573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
125, 64
               

               
Conread position:
               
176-375
               

               
Cow position:
               
chr28:11451313-11451497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
126, 48
               

               
Conread position:
               
176-548
               

               
Cow position:
               
chr28:21363932-21363570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 19
               

               
Conread position:
               
177-341
               

               
Cow position:
               
chr28:3729829-3729990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
125, 18
               

               
Conread position:
               
177-559
               

               
Cow position:
               
chr28:26743822-26743433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
75, 238
               

               
Conread position:
               
178-361
               

               
Cow position:
               
chr28:26055668-26055489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
124, 62
               

               
Conread position:
               
178-385
               

               
Cow position:
               
chr28:9384099-9384302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
7, 75
               

               
Conread position:
               
178-558
               

               
Cow position:
               
chr28:6059270-6059660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
15, 239
               

               
Conread position:
               
179-558
               

               
Cow position:
               
chr28:12430796-12430422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
119, 81
               

               
Conread position:
               
180-333
               

               
Cow position:
               
chr28:16569992-16569842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
126, 68
               

               
Conread position:
               
180-339
               

               
Cow position:
               
chr28:10855533-10855687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
122, 52
               

               
Conread position:
               
180-340
               

               
Cow position:
               
chr28:4866390-4866544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
121, 52
               

               
Conread position:
               
180-344
               

               
Cow position:
               
chr28:3475377-3475215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
122, 18
               

               
Conread position:
               
180-347
               

               
Cow position:
               
chr28:5245547-5245379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
63, 94
               

               
Conread position:
               
180-359
               

               
Cow position:
               
chr28:5188242-5188418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
122, 58
               

               
Conread position:
               
180-401
               

               
Cow position:
               
chr28:20397178-20397401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
18, 74
               

               
Conread position:
               
180-477
               

               
Cow position:
               
chr28:18369825-18370116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
122, 80
               

               
Conread position:
               
181-347
               

               
Cow position:
               
chr28:16450345-16450506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
181-357
               

               
Cow position:
               
chr28:18176057-18176234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
121, 73
               

               
Conread position:
               
181-551
               

               
Cow position:
               
chr28:29434220-29434605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
44, 210
               

               
Conread position:
               
182-409
               

               
Cow position:
               
chr28:30237928-30238161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
65, 54
               

               
Conread position:
               
183-326
               

               
Cow position:
               
chr28:16386341-16386474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
119, 19
               

               
Conread position:
               
183-543
               

               
Cow position:
               
chr28:34442571-34442936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
119, 71
               

               
Conread position:
               
183-546
               

               
Cow position:
               
chr28:7512396-7512767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
119, 71
               

               
Conread position:
               
183-558
               

               
Cow position:
               
chr28:4913907-4914289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
93, 70
               

               
Conread position:
               
187-387
               

               
Cow position:
               
chr28:13938012-13938214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
187-559
               

               
Cow position:
               
chr28:4138486-4138858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 343
               

               
Conread position:
               
187-559
               

               
Cow position:
               
chr28:30303027-30303384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
115, 44
               

               
Conread position:
               
188-389
               

               
Cow position:
               
chr28:8112090-8112293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
188-559
               

               
Cow position:
               
chr28:19221963-19222334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
50, 180
               

               
Conread position:
               
193-357
               

               
Cow position:
               
chr28:22307184-22307022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
109, 67
               

               
Conread position:
               
193-559
               

               
Cow position:
               
chr28:2899173-2898807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
45, 231
               

               
Conread position:
               
194-347
               

               
Cow position:
               
chr28:11559459-11559609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
108, 22
               

               
Conread position:
               
197-546
               

               
Cow position:
               
chr28:2819943-2819583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
105, 44
               

               
Conread position:
               
198-347
               

               
Cow position:
               
chr28:25459924-25459776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
104, 60
               

               
Conread position:
               
201-360
               

               
Cow position:
               
chr28:8167187-8167344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
101, 8
               

               
Conread position:
               
202-558
               

               
Cow position:
               
chr28:23793145-23793490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
99, 34
               

               
Conread position:
               
208-359
               

               
Cow position:
               
chr28:26533706-26533554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
94, 52
               

               
Conread position:
               
212-337
               

               
Cow position:
               
chr28:2090689-2090564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
90, 48
               

               
Conread position:
               
222-358
               

               
Cow position:
               
chr28:30081576-30081712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
79, 32
               

               
Conread position:
               
225-370
               

               
Cow position:
               
chr28:17601408-17601554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
77, 34
               

               
Conread position:
               
225-390
               

               
Cow position:
               
chr28:8149486-8149652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 34
               

               
Conread position:
               
226-368
               

               
Cow position:
               
chr28:24674614-24674469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
76, 36
               

               
Conread position:
               
227-360
               

               
Cow position:
               
chr28:23047762-23047628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 32
               

               
Conread position:
               
230-347
               

               
Cow position:
               
chr28:5867867-5867744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
230-361
               

               
Cow position:
               
chr28:2743223-2743090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
230-361
               

               
Cow position:
               
chr28:29041911-29042045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
230-370
               

               
Cow position:
               
chr28:8147723-8147863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
230-409
               

               
Cow position:
               
chr28:7684563-7684737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
230-541
               

               
Cow position:
               
chr28:2752351-2752671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
25, 177
               

               
Conread position:
               
230-554
               

               
Cow position:
               
chr28:16110078-16109761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
72, 33
               

               
Conread position:
               
230-559
               

               
Cow position:
               
chr28:31109860-31110194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
34, 156
               

               
Conread position:
               
231-354
               

               
Cow position:
               
chr28:11365389-11365511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
231-557
               

               
Cow position:
               
chr28:22321556-22321235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 14
               

               
Conread position:
               
236-370
               

               
Cow position:
               
chr28:13090391-13090526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
66, 23
               

               
Conread position:
               
238-559
               

               
Cow position:
               
chr28:21355364-21355036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
64, 21
               

               
Conread position:
               
242-376
               

               
Cow position:
               
chr28:25677212-25677348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
57, 18
               

               
Conread position:
               
249-359
               

               
Cow position:
               
chr28:10247610-10247500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 10
               

               
Conread position:
               
249-362
               

               
Cow position:
               
chr28:16692045-16691931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 11
               

               
Conread position:
               
249-526
               

               
Cow position:
               
chr28:8408846-8408576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
161, 10
               

               
Conread position:
               
249-558
               

               
Cow position:
               
chr28:26685233-26684925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
54, 11
               

               
Conread position:
               
263-572
               

               
Cow position:
               
chr28:21380988-21380673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
266-559
               

               
Cow position:
               
chr28:7228283-7228574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
33, 10
               

               
Conread position:
               
299-557
               

               
Cow position:
               
chr28:13267860-13267595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
87, 30
               

               
Conread position:
               
427-559
               

               
Cow position:
               
chr28:3161129-3161257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
437-526
               

               
Cow position:
               
chr28:19015352-19015443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
437-558
               

               
Cow position:
               
chr28:118120-118243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
47, 60
               

               
Conread position:
               
437-559
               

               
Cow position:
               
chr28:7980483-7980607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
441-558
               

               
Cow position:
               
chr28:26784537-26784654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 89
               

               
Conread position:
               
445-572
               

               
Cow position:
               
chr28:9390441-9390566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
446-559
               

               
Cow position:
               
chr28:7751374-7751489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               
Show alignments to all cow chromosomes.