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Cow genome map

           
Conread name:
           
Ss1.1-Pla1-C0000032_A06.5
        

               
Conread position:
               
1-114
               

               
Cow position:
               
chr3:22924183-22924294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1-131
               

               
Cow position:
               
chr3:59605040-59604909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chr3:15780767-15781044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
132, 104
               

               
Conread position:
               
2-358
               

               
Cow position:
               
chr3:54551392-54551729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
300, 59
               

               
Conread position:
               
11-111
               

               
Cow position:
               
chr3:26066177-26066073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
14-546
               

               
Cow position:
               
chr3:59451920-59451384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
91, 69
               

               
Conread position:
               
59-347
               

               
Cow position:
               
chr3:15950637-15950919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 6
               

               
Conread position:
               
85-281
               

               
Cow position:
               
chr3:84880682-84880873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
117, 30
               

               
Conread position:
               
89-284
               

               
Cow position:
               
chr3:59926885-59926688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
20, 11
               

               
Conread position:
               
89-346
               

               
Cow position:
               
chr3:12899699-12899945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
208, 39
               

               
Conread position:
               
93-359
               

               
Cow position:
               
chr3:32377063-32376796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
40, 127
               

               
Conread position:
               
95-548
               

               
Cow position:
               
chr3:53875518-53875966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 76
               

               
Conread position:
               
104-327
               

               
Cow position:
               
chr3:57790847-57790627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 16
               

               
Conread position:
               
115-560
               

               
Cow position:
               
chr3:74087954-74088392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
187, 13
               

               
Conread position:
               
120-253
               

               
Cow position:
               
chr3:15861094-15861226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
122-345
               

               
Cow position:
               
chr3:4102084-4102309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
173, 132
               

               
Conread position:
               
123-347
               

               
Cow position:
               
chr3:44782555-44782337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
9, 46
               

               
Conread position:
               
123-357
               

               
Cow position:
               
chr3:35624325-35624561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 133
               

               
Conread position:
               
126-507
               

               
Cow position:
               
chr3:9662961-9663340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 24
               

               
Conread position:
               
128-345
               

               
Cow position:
               
chr3:65022513-65022290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
118, 28
               

               
Conread position:
               
129-407
               

               
Cow position:
               
chr3:69144909-69144622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
23, 128
               

               
Conread position:
               
129-500
               

               
Cow position:
               
chr3:15153897-15153531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 29
               

               
Conread position:
               
131-371
               

               
Cow position:
               
chr3:56948890-56949118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
170, 23
               

               
Conread position:
               
131-525
               

               
Cow position:
               
chr3:1830366-1830755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 43
               

               
Conread position:
               
132-274
               

               
Cow position:
               
chr3:77517935-77517799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
132-347
               

               
Cow position:
               
chr3:73305322-73305105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 123
               

               
Conread position:
               
132-559
               

               
Cow position:
               
chr3:55947807-55947358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
30, 123
               

               
Conread position:
               
133-331
               

               
Cow position:
               
chr3:56394282-56394084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
30, 63
               

               
Conread position:
               
133-336
               

               
Cow position:
               
chr3:74050505-74050697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
168, 19
               

               
Conread position:
               
133-361
               

               
Cow position:
               
chr3:36240316-36240087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
134-284
               

               
Cow position:
               
chr3:19826854-19826711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
29, 40
               

               
Conread position:
               
134-314
               

               
Cow position:
               
chr3:30682822-30682999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
35, 92
               

               
Conread position:
               
134-369
               

               
Cow position:
               
chr3:47753440-47753198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
101, 35
               

               
Conread position:
               
134-559
               

               
Cow position:
               
chr3:68145652-68146053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
229, 17
               

               
Conread position:
               
135-327
               

               
Cow position:
               
chr3:62998790-62998978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 62
               

               
Conread position:
               
135-330
               

               
Cow position:
               
chr3:68624422-68624228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
166, 27
               

               
Conread position:
               
135-335
               

               
Cow position:
               
chr3:59699450-59699646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
167, 17
               

               
Conread position:
               
135-347
               

               
Cow position:
               
chr3:3163914-3164116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
119, 16
               

               
Conread position:
               
135-347
               

               
Cow position:
               
chr3:81616248-81616459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
164, 34
               

               
Conread position:
               
135-357
               

               
Cow position:
               
chr3:6724406-6724183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
167, 119
               

               
Conread position:
               
135-358
               

               
Cow position:
               
chr3:80733644-80733870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
22, 121
               

               
Conread position:
               
135-359
               

               
Cow position:
               
chr3:42671737-42671511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
135-359
               

               
Cow position:
               
chr3:65308249-65308472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
135-359
               

               
Cow position:
               
chr3:81480857-81480638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
166, 10
               

               
Conread position:
               
135-524
               

               
Cow position:
               
chr3:83797616-83798024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
20, 122
               

               
Conread position:
               
135-558
               

               
Cow position:
               
chr3:15671949-15672360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
349, 125
               

               
Conread position:
               
135-559
               

               
Cow position:
               
chr3:61857712-61857279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
167, 42
               

               
Conread position:
               
136-306
               

               
Cow position:
               
chr3:53836507-53836671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
166, 102
               

               
Conread position:
               
136-559
               

               
Cow position:
               
chr3:60933621-60933198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
137-327
               

               
Cow position:
               
chr3:82424882-82425065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
161, 20
               

               
Conread position:
               
137-338
               

               
Cow position:
               
chr3:63069163-63069363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 11
               

               
Conread position:
               
137-361
               

               
Cow position:
               
chr3:986219-985994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 119
               

               
Conread position:
               
137-361
               

               
Cow position:
               
chr3:83889449-83889227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
165, 13
               

               
Conread position:
               
137-370
               

               
Cow position:
               
chr3:27976328-27976553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
81, 21
               

               
Conread position:
               
137-408
               

               
Cow position:
               
chr3:51329029-51329300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
165, 114
               

               
Conread position:
               
137-554
               

               
Cow position:
               
chr3:72474123-72473695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
129, 30
               

               
Conread position:
               
137-556
               

               
Cow position:
               
chr3:36375335-36375762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 101
               

               
Conread position:
               
138-257
               

               
Cow position:
               
chr3:28096665-28096783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
138-347
               

               
Cow position:
               
chr3:36668966-36669170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 82
               

               
Conread position:
               
139-258
               

               
Cow position:
               
chr3:51012246-51012365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
139-330
               

               
Cow position:
               
chr3:35079305-35079497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
163, 115
               

               
Conread position:
               
139-346
               

               
Cow position:
               
chr3:53428718-53428922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
158, 95
               

               
Conread position:
               
139-347
               

               
Cow position:
               
chr3:24925018-24924814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
15, 116
               

               
Conread position:
               
139-359
               

               
Cow position:
               
chr3:5551605-5551830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
34, 125
               

               
Conread position:
               
139-359
               

               
Cow position:
               
chr3:26992773-26992552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
163, 115
               

               
Conread position:
               
139-359
               

               
Cow position:
               
chr3:32570058-32569835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
139-370
               

               
Cow position:
               
chr3:58452244-58452018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
163, 5
               

               
Conread position:
               
139-388
               

               
Cow position:
               
chr3:52487825-52487567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
94, 13
               

               
Conread position:
               
139-558
               

               
Cow position:
               
chr3:46160655-46161061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 119
               

               
Conread position:
               
139-559
               

               
Cow position:
               
chr3:15953883-15954294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
163, 12
               

               
Conread position:
               
140-286
               

               
Cow position:
               
chr3:41746301-41746449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
120, 48
               

               
Conread position:
               
140-327
               

               
Cow position:
               
chr3:82175709-82175521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
22, 115
               

               
Conread position:
               
140-347
               

               
Cow position:
               
chr3:15795421-15795213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
36, 115
               

               
Conread position:
               
140-359
               

               
Cow position:
               
chr3:78066952-78067175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
22, 158
               

               
Conread position:
               
140-391
               

               
Cow position:
               
chr3:79272377-79272623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
162, 97
               

               
Conread position:
               
140-559
               

               
Cow position:
               
chr3:48241804-48241404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 5
               

               
Conread position:
               
141-269
               

               
Cow position:
               
chr3:29386065-29385940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
141-292
               

               
Cow position:
               
chr3:14558958-14558808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
141-305
               

               
Cow position:
               
chr3:7408639-7408472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 116
               

               
Conread position:
               
141-305
               

               
Cow position:
               
chr3:53591295-53591460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 114
               

               
Conread position:
               
141-311
               

               
Cow position:
               
chr3:63333171-63332994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 57
               

               
Conread position:
               
141-318
               

               
Cow position:
               
chr3:13928014-13927839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
141-344
               

               
Cow position:
               
chr3:635376-635174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
156, 64
               

               
Conread position:
               
141-352
               

               
Cow position:
               
chr3:67966291-67966503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
16, 114
               

               
Conread position:
               
141-359
               

               
Cow position:
               
chr3:45822824-45823040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
161, 11
               

               
Conread position:
               
141-359
               

               
Cow position:
               
chr3:72087434-72087218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 58
               

               
Conread position:
               
141-538
               

               
Cow position:
               
chr3:79824720-79825116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
141-546
               

               
Cow position:
               
chr3:3556744-3556345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 12
               

               
Conread position:
               
141-548
               

               
Cow position:
               
chr3:67698477-67698073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
159, 113
               

               
Conread position:
               
141-557
               

               
Cow position:
               
chr3:2675229-2674814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
141-559
               

               
Cow position:
               
chr3:53592489-53592918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 13
               

               
Conread position:
               
142-239
               

               
Cow position:
               
chr3:16795271-16795174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 32
               

               
Conread position:
               
142-325
               

               
Cow position:
               
chr3:48537563-48537378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
142-356
               

               
Cow position:
               
chr3:63202118-63201904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
160, 41
               

               
Conread position:
               
142-370
               

               
Cow position:
               
chr3:17304777-17305009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
142-524
               

               
Cow position:
               
chr3:68156919-68156556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
99, 14
               

               
Conread position:
               
142-559
               

               
Cow position:
               
chr3:16547867-16547459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
73, 113
               

               
Conread position:
               
142-559
               

               
Cow position:
               
chr3:21081183-21081603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
110, 53
               

               
Conread position:
               
142-559
               

               
Cow position:
               
chr3:31077527-31077948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
143-263
               

               
Cow position:
               
chr3:52635917-52635798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 53
               

               
Conread position:
               
143-299
               

               
Cow position:
               
chr3:42355861-42355708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 53
               

               
Conread position:
               
143-305
               

               
Cow position:
               
chr3:4469597-4469760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 120
               

               
Conread position:
               
143-311
               

               
Cow position:
               
chr3:12621179-12621348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
159, 111
               

               
Conread position:
               
143-326
               

               
Cow position:
               
chr3:42589291-42589113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
159, 16
               

               
Conread position:
               
143-327
               

               
Cow position:
               
chr3:49787752-49787572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
159, 97
               

               
Conread position:
               
143-348
               

               
Cow position:
               
chr3:39605818-39606023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
106, 24
               

               
Conread position:
               
143-357
               

               
Cow position:
               
chr3:79893301-79893514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
159, 24
               

               
Conread position:
               
143-359
               

               
Cow position:
               
chr3:28883966-28884179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
158, 93
               

               
Conread position:
               
143-361
               

               
Cow position:
               
chr3:175139-174928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
190, 59
               

               
Conread position:
               
143-361
               

               
Cow position:
               
chr3:19711144-19711358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
135, 8
               

               
Conread position:
               
143-361
               

               
Cow position:
               
chr3:24548634-24548857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
37, 121
               

               
Conread position:
               
143-361
               

               
Cow position:
               
chr3:66631150-66631372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
108, 13
               

               
Conread position:
               
143-525
               

               
Cow position:
               
chr3:17957658-17957276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
16, 112
               

               
Conread position:
               
143-536
               

               
Cow position:
               
chr3:30438542-30438918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
37, 11
               

               
Conread position:
               
143-545
               

               
Cow position:
               
chr3:27696770-27697186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
80, 8
               

               
Conread position:
               
143-545
               

               
Cow position:
               
chr3:53384086-53384491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 10
               

               
Conread position:
               
143-559
               

               
Cow position:
               
chr3:55970711-55970287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 133
               

               
Conread position:
               
143-559
               

               
Cow position:
               
chr3:83215465-83215036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 401
               

               
Conread position:
               
144-309
               

               
Cow position:
               
chr3:29944055-29943888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
20, 9
               

               
Conread position:
               
144-347
               

               
Cow position:
               
chr3:44720693-44720495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
144-357
               

               
Cow position:
               
chr3:55094038-55094246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
158, 9
               

               
Conread position:
               
144-359
               

               
Cow position:
               
chr3:29828218-29828435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
144-361
               

               
Cow position:
               
chr3:19006338-19006121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
51, 111
               

               
Conread position:
               
144-369
               

               
Cow position:
               
chr3:67407174-67407394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
154, 25
               

               
Conread position:
               
144-515
               

               
Cow position:
               
chr3:19793094-19792716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
19, 53
               

               
Conread position:
               
144-522
               

               
Cow position:
               
chr3:59649446-59649071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
155, 14
               

               
Conread position:
               
144-559
               

               
Cow position:
               
chr3:71238347-71237939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 92
               

               
Conread position:
               
144-559
               

               
Cow position:
               
chr3:71496934-71497362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 371
               

               
Conread position:
               
145-240
               

               
Cow position:
               
chr3:43727463-43727368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
145-278
               

               
Cow position:
               
chr3:9000116-8999983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 22
               

               
Conread position:
               
145-284
               

               
Cow position:
               
chr3:15780629-15780771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
90, 13
               

               
Conread position:
               
145-298
               

               
Cow position:
               
chr3:14000364-14000507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
151, 30
               

               
Conread position:
               
145-299
               

               
Cow position:
               
chr3:33699186-33699033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
145-306
               

               
Cow position:
               
chr3:5823360-5823507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
157, 53
               

               
Conread position:
               
145-335
               

               
Cow position:
               
chr3:19611159-19611346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
152, 89
               

               
Conread position:
               
145-340
               

               
Cow position:
               
chr3:60186346-60186146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 22
               

               
Conread position:
               
145-343
               

               
Cow position:
               
chr3:50768872-50768677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
156, 16
               

               
Conread position:
               
145-346
               

               
Cow position:
               
chr3:76168437-76168637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 24
               

               
Conread position:
               
145-347
               

               
Cow position:
               
chr3:19044575-19044772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
145-347
               

               
Cow position:
               
chr3:33289884-33290087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
156, 126
               

               
Conread position:
               
145-347
               

               
Cow position:
               
chr3:49741101-49741307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 180
               

               
Conread position:
               
145-356
               

               
Cow position:
               
chr3:27286709-27286503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
157, 95
               

               
Conread position:
               
145-357
               

               
Cow position:
               
chr3:18143920-18144134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
12, 43
               

               
Conread position:
               
145-359
               

               
Cow position:
               
chr3:84137621-84137833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 13
               

               
Conread position:
               
145-360
               

               
Cow position:
               
chr3:18831612-18831402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
152, 94
               

               
Conread position:
               
145-362
               

               
Cow position:
               
chr3:59391931-59392139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
145-370
               

               
Cow position:
               
chr3:3656710-3656485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 51
               

               
Conread position:
               
145-370
               

               
Cow position:
               
chr3:8813914-8814142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
86, 9
               

               
Conread position:
               
145-370
               

               
Cow position:
               
chr3:20841687-20841902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
40, 9
               

               
Conread position:
               
145-370
               

               
Cow position:
               
chr3:22165221-22165444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
156, 103
               

               
Conread position:
               
145-370
               

               
Cow position:
               
chr3:80597922-80597694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
12, 110
               

               
Conread position:
               
145-374
               

               
Cow position:
               
chr3:55541213-55540984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
110, 221
               

               
Conread position:
               
145-467
               

               
Cow position:
               
chr3:51033567-51033243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
145-513
               

               
Cow position:
               
chr3:58960399-58960763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
157, 99
               

               
Conread position:
               
145-518
               

               
Cow position:
               
chr3:68587213-68586844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 92
               

               
Conread position:
               
145-533
               

               
Cow position:
               
chr3:55318704-55319098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 104
               

               
Conread position:
               
145-546
               

               
Cow position:
               
chr3:55712625-55712221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 76
               

               
Conread position:
               
145-557
               

               
Cow position:
               
chr3:15786761-15786348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 11
               

               
Conread position:
               
145-559
               

               
Cow position:
               
chr3:2025396-2024967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 13
               

               
Conread position:
               
145-559
               

               
Cow position:
               
chr3:79884286-79884704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 213
               

               
Conread position:
               
146-241
               

               
Cow position:
               
chr3:57760714-57760619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
146-253
               

               
Cow position:
               
chr3:17729278-17729170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
146-269
               

               
Cow position:
               
chr3:1452824-1452946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
146-306
               

               
Cow position:
               
chr3:18301376-18301535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
156, 21
               

               
Conread position:
               
146-358
               

               
Cow position:
               
chr3:84928300-84928086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
146-359
               

               
Cow position:
               
chr3:31168745-31168531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
16, 114
               

               
Conread position:
               
146-360
               

               
Cow position:
               
chr3:69650704-69650908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
30, 49
               

               
Conread position:
               
146-361
               

               
Cow position:
               
chr3:45744103-45743885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
156, 91
               

               
Conread position:
               
146-370
               

               
Cow position:
               
chr3:73837527-73837747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
156, 20
               

               
Conread position:
               
146-409
               

               
Cow position:
               
chr3:58527568-58527310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
155, 9
               

               
Conread position:
               
146-482
               

               
Cow position:
               
chr3:11199783-11200123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
156, 108
               

               
Conread position:
               
146-518
               

               
Cow position:
               
chr3:48253072-48252705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
155, 88
               

               
Conread position:
               
147-237
               

               
Cow position:
               
chr3:32419382-32419473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
147-330
               

               
Cow position:
               
chr3:56754339-56754522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
17, 115
               

               
Conread position:
               
147-339
               

               
Cow position:
               
chr3:16868014-16867825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
154, 9
               

               
Conread position:
               
148-334
               

               
Cow position:
               
chr3:24724317-24724507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
148-347
               

               
Cow position:
               
chr3:15859191-15859385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
123, 82
               

               
Conread position:
               
148-360
               

               
Cow position:
               
chr3:5044617-5044832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
14, 108
               

               
Conread position:
               
148-361
               

               
Cow position:
               
chr3:28902571-28902779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
154, 86
               

               
Conread position:
               
148-401
               

               
Cow position:
               
chr3:17235013-17235275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
80, 157
               

               
Conread position:
               
148-521
               

               
Cow position:
               
chr3:15051760-15052134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
13, 101
               

               
Conread position:
               
148-523
               

               
Cow position:
               
chr3:57274248-57273882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
153, 14
               

               
Conread position:
               
148-559
               

               
Cow position:
               
chr3:210513-210106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 106
               

               
Conread position:
               
148-559
               

               
Cow position:
               
chr3:3985506-3985113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
151, 27
               

               
Conread position:
               
149-295
               

               
Cow position:
               
chr3:58562890-58562746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
118, 19
               

               
Conread position:
               
149-311
               

               
Cow position:
               
chr3:58497850-58497687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
153, 105
               

               
Conread position:
               
149-320
               

               
Cow position:
               
chr3:22899542-22899712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
153, 5
               

               
Conread position:
               
149-368
               

               
Cow position:
               
chr3:74127310-74127530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
97, 111
               

               
Conread position:
               
149-545
               

               
Cow position:
               
chr3:18185270-18184865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
149-559
               

               
Cow position:
               
chr3:17456078-17456486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
150-344
               

               
Cow position:
               
chr3:55248777-55248587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
152, 18
               

               
Conread position:
               
150-346
               

               
Cow position:
               
chr3:4086660-4086869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
83, 18
               

               
Conread position:
               
150-358
               

               
Cow position:
               
chr3:40212846-40213051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 100
               

               
Conread position:
               
150-359
               

               
Cow position:
               
chr3:36411894-36412106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
34, 25
               

               
Conread position:
               
150-370
               

               
Cow position:
               
chr3:29946576-29946358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
15, 26
               

               
Conread position:
               
150-507
               

               
Cow position:
               
chr3:48810449-48810805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
70, 272
               

               
Conread position:
               
150-559
               

               
Cow position:
               
chr3:65058888-65058483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 99
               

               
Conread position:
               
151-256
               

               
Cow position:
               
chr3:40794531-40794636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
151-268
               

               
Cow position:
               
chr3:52499009-52499124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
151-274
               

               
Cow position:
               
chr3:57056094-57055972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
151-295
               

               
Cow position:
               
chr3:42933671-42933528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
151-300
               

               
Cow position:
               
chr3:40777083-40777230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
151-300
               

               
Cow position:
               
chr3:57553710-57553850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
151-301
               

               
Cow position:
               
chr3:79316880-79316730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
88, 31
               

               
Conread position:
               
151-333
               

               
Cow position:
               
chr3:11608005-11607830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
151, 82
               

               
Conread position:
               
151-339
               

               
Cow position:
               
chr3:57704518-57704338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
150, 18
               

               
Conread position:
               
151-341
               

               
Cow position:
               
chr3:77654109-77653928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
15, 90
               

               
Conread position:
               
151-342
               

               
Cow position:
               
chr3:14211798-14211984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
151, 83
               

               
Conread position:
               
151-343
               

               
Cow position:
               
chr3:48772042-48772239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
77, 16
               

               
Conread position:
               
151-344
               

               
Cow position:
               
chr3:83787629-83787437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
148, 16
               

               
Conread position:
               
151-346
               

               
Cow position:
               
chr3:24596245-24596428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
150, 40
               

               
Conread position:
               
151-347
               

               
Cow position:
               
chr3:38817477-38817674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
141, 103
               

               
Conread position:
               
151-347
               

               
Cow position:
               
chr3:72687679-72687876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-347
               

               
Cow position:
               
chr3:79398333-79398136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
150, 103
               

               
Conread position:
               
151-355
               

               
Cow position:
               
chr3:58010646-58010842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
151, 40
               

               
Conread position:
               
151-356
               

               
Cow position:
               
chr3:54049841-54050046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr3:6728133-6728348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
70, 109
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr3:7381644-7381847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
151, 67
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr3:14770698-14770900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
151, 83
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr3:20158262-20158050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
93, 128
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr3:41129904-41129693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 105
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr3:79730707-79730498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
151, 102
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr3:79813806-79813591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
70, 76
               

               
Conread position:
               
151-360
               

               
Cow position:
               
chr3:5040114-5040326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 99
               

               
Conread position:
               
151-360
               

               
Cow position:
               
chr3:18059892-18059683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
151, 97
               

               
Conread position:
               
151-360
               

               
Cow position:
               
chr3:31115091-31115289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
150, 18
               

               
Conread position:
               
151-360
               

               
Cow position:
               
chr3:64197013-64196807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
147, 89
               

               
Conread position:
               
151-360
               

               
Cow position:
               
chr3:73589580-73589790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
93, 11
               

               
Conread position:
               
151-360
               

               
Cow position:
               
chr3:75080938-75080744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
170, 18
               

               
Conread position:
               
151-361
               

               
Cow position:
               
chr3:32317640-32317851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
6, 112
               

               
Conread position:
               
151-361
               

               
Cow position:
               
chr3:54481614-54481820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
150, 57
               

               
Conread position:
               
151-361
               

               
Cow position:
               
chr3:79271521-79271731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 74
               

               
Conread position:
               
151-361
               

               
Cow position:
               
chr3:84807138-84807348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
151, 49
               

               
Conread position:
               
151-368
               

               
Cow position:
               
chr3:34871756-34871540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
151-370
               

               
Cow position:
               
chr3:18249143-18248922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
151, 102
               

               
Conread position:
               
151-370
               

               
Cow position:
               
chr3:59317888-59317673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 84
               

               
Conread position:
               
151-371
               

               
Cow position:
               
chr3:75777881-75778092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
148, 77
               

               
Conread position:
               
151-387
               

               
Cow position:
               
chr3:79098289-79098051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
6, 104
               

               
Conread position:
               
151-393
               

               
Cow position:
               
chr3:27553720-27553476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
128, 23
               

               
Conread position:
               
151-401
               

               
Cow position:
               
chr3:46792571-46792324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
151, 74
               

               
Conread position:
               
151-406
               

               
Cow position:
               
chr3:48468364-48468102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-510
               

               
Cow position:
               
chr3:32787650-32787289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
151, 75
               

               
Conread position:
               
151-525
               

               
Cow position:
               
chr3:18687089-18686721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
151, 81
               

               
Conread position:
               
151-525
               

               
Cow position:
               
chr3:19199175-19198801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
148, 54
               

               
Conread position:
               
151-526
               

               
Cow position:
               
chr3:55434519-55434144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-533
               

               
Cow position:
               
chr3:8061308-8060932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
150, 48
               

               
Conread position:
               
151-546
               

               
Cow position:
               
chr3:75480185-75479808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
150, 17
               

               
Conread position:
               
151-551
               

               
Cow position:
               
chr3:39969675-39970081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
150, 89
               

               
Conread position:
               
151-558
               

               
Cow position:
               
chr3:49482526-49482925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 47
               

               
Conread position:
               
151-559
               

               
Cow position:
               
chr3:14725503-14725080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
151, 16
               

               
Conread position:
               
151-559
               

               
Cow position:
               
chr3:30180271-30179866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 84
               

               
Conread position:
               
151-559
               

               
Cow position:
               
chr3:79902685-79902286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
154, 103
               

               
Conread position:
               
151-559
               

               
Cow position:
               
chr3:83474939-83474530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
101, 7
               

               
Conread position:
               
152-345
               

               
Cow position:
               
chr3:31352697-31352879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
146, 39
               

               
Conread position:
               
152-559
               

               
Cow position:
               
chr3:45882085-45881692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 16
               

               
Conread position:
               
153-276
               

               
Cow position:
               
chr3:81276987-81277114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
153-283
               

               
Cow position:
               
chr3:75711696-75711564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
153-359
               

               
Cow position:
               
chr3:75222691-75222485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
149, 101
               

               
Conread position:
               
153-361
               

               
Cow position:
               
chr3:81666983-81666779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
149, 45
               

               
Conread position:
               
154-300
               

               
Cow position:
               
chr3:55972898-55973035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
154-312
               

               
Cow position:
               
chr3:78115405-78115564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
148, 100
               

               
Conread position:
               
154-323
               

               
Cow position:
               
chr3:56023208-56023050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
148, 100
               

               
Conread position:
               
154-345
               

               
Cow position:
               
chr3:41510761-41510572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
147, 15
               

               
Conread position:
               
154-345
               

               
Cow position:
               
chr3:80910782-80910591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
147, 97
               

               
Conread position:
               
154-356
               

               
Cow position:
               
chr3:20065961-20066169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
12, 101
               

               
Conread position:
               
154-361
               

               
Cow position:
               
chr3:41366515-41366730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 107
               

               
Conread position:
               
154-361
               

               
Cow position:
               
chr3:56678160-56678371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
154-380
               

               
Cow position:
               
chr3:3316625-3316854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
84, 24
               

               
Conread position:
               
154-409
               

               
Cow position:
               
chr3:23804688-23804433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
154-520
               

               
Cow position:
               
chr3:71231582-71231217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 13
               

               
Conread position:
               
154-544
               

               
Cow position:
               
chr3:29596580-29596192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 44
               

               
Conread position:
               
154-546
               

               
Cow position:
               
chr3:13301665-13302056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 21
               

               
Conread position:
               
155-320
               

               
Cow position:
               
chr3:66978992-66978822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
37, 102
               

               
Conread position:
               
155-329
               

               
Cow position:
               
chr3:3011329-3011158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
147, 36
               

               
Conread position:
               
155-339
               

               
Cow position:
               
chr3:3262636-3262832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
155-345
               

               
Cow position:
               
chr3:78443381-78443574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 107
               

               
Conread position:
               
155-347
               

               
Cow position:
               
chr3:37851680-37851490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
147, 25
               

               
Conread position:
               
155-347
               

               
Cow position:
               
chr3:59588828-59588636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
86, 177
               

               
Conread position:
               
155-359
               

               
Cow position:
               
chr3:36190083-36189872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
97, 40
               

               
Conread position:
               
155-359
               

               
Cow position:
               
chr3:80329499-80329295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
147, 99
               

               
Conread position:
               
155-360
               

               
Cow position:
               
chr3:35299870-35299649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
75, 12
               

               
Conread position:
               
155-360
               

               
Cow position:
               
chr3:48459142-48459348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 101
               

               
Conread position:
               
155-361
               

               
Cow position:
               
chr3:24304441-24304645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
80, 111
               

               
Conread position:
               
155-370
               

               
Cow position:
               
chr3:73525051-73525268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
146, 99
               

               
Conread position:
               
155-520
               

               
Cow position:
               
chr3:26982233-26981883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
147, 36
               

               
Conread position:
               
155-559
               

               
Cow position:
               
chr3:16333986-16333589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 11
               

               
Conread position:
               
155-559
               

               
Cow position:
               
chr3:45211488-45211078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 99
               

               
Conread position:
               
155-559
               

               
Cow position:
               
chr3:83491263-83490859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
144, 12
               

               
Conread position:
               
156-318
               

               
Cow position:
               
chr3:73924858-73925015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
146, 11
               

               
Conread position:
               
156-346
               

               
Cow position:
               
chr3:1037211-1037017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
156-347
               

               
Cow position:
               
chr3:30940986-30940801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
145, 13
               

               
Conread position:
               
156-347
               

               
Cow position:
               
chr3:35055794-35055980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
146, 11
               

               
Conread position:
               
156-358
               

               
Cow position:
               
chr3:56943748-56943943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
145, 11
               

               
Conread position:
               
156-358
               

               
Cow position:
               
chr3:83934907-83934708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
146, 91
               

               
Conread position:
               
156-360
               

               
Cow position:
               
chr3:41874090-41873886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
146, 98
               

               
Conread position:
               
156-360
               

               
Cow position:
               
chr3:81234571-81234370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
141, 76
               

               
Conread position:
               
156-361
               

               
Cow position:
               
chr3:15973751-15973546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 13
               

               
Conread position:
               
156-388
               

               
Cow position:
               
chr3:36160017-36160241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
146, 50
               

               
Conread position:
               
156-409
               

               
Cow position:
               
chr3:52419131-52418863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
9, 187
               

               
Conread position:
               
156-525
               

               
Cow position:
               
chr3:14801927-14801562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
146, 39
               

               
Conread position:
               
156-533
               

               
Cow position:
               
chr3:75570263-75570643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
76, 62
               

               
Conread position:
               
156-546
               

               
Cow position:
               
chr3:15388404-15388007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
156-546
               

               
Cow position:
               
chr3:64280753-64281140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
8, 86
               

               
Conread position:
               
156-546
               

               
Cow position:
               
chr3:77365109-77365500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
145, 33
               

               
Conread position:
               
156-558
               

               
Cow position:
               
chr3:54435151-54434757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
242, 73
               

               
Conread position:
               
156-559
               

               
Cow position:
               
chr3:3032592-3032177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
112, 83
               

               
Conread position:
               
156-559
               

               
Cow position:
               
chr3:59474302-59473895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 12
               

               
Conread position:
               
156-559
               

               
Cow position:
               
chr3:59630320-59630716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
54, 189
               

               
Conread position:
               
156-568
               

               
Cow position:
               
chr3:65969357-65968928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
157-354
               

               
Cow position:
               
chr3:23640523-23640330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
7, 86
               

               
Conread position:
               
157-360
               

               
Cow position:
               
chr3:26783326-26783526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
75, 11
               

               
Conread position:
               
157-361
               

               
Cow position:
               
chr3:58317762-58317968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
95, 10
               

               
Conread position:
               
158-253
               

               
Cow position:
               
chr3:41891899-41891994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
158-258
               

               
Cow position:
               
chr3:47735402-47735302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
158-265
               

               
Cow position:
               
chr3:10454025-10453919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
158-268
               

               
Cow position:
               
chr3:52359317-52359211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
158-274
               

               
Cow position:
               
chr3:18177451-18177336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
158-282
               

               
Cow position:
               
chr3:44415390-44415513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
158-289
               

               
Cow position:
               
chr3:59997935-59997804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
158-294
               

               
Cow position:
               
chr3:10695821-10695957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
158-295
               

               
Cow position:
               
chr3:43091270-43091139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
88, 9
               

               
Conread position:
               
158-302
               

               
Cow position:
               
chr3:76172501-76172650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
158-310
               

               
Cow position:
               
chr3:52450602-52450456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
144, 26
               

               
Conread position:
               
158-314
               

               
Cow position:
               
chr3:73410464-73410313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
143, 56
               

               
Conread position:
               
158-315
               

               
Cow position:
               
chr3:61171178-61171343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
158-318
               

               
Cow position:
               
chr3:70925265-70925104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
147, 96
               

               
Conread position:
               
158-318
               

               
Cow position:
               
chr3:84243500-84243657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-319
               

               
Cow position:
               
chr3:48566508-48566670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-320
               

               
Cow position:
               
chr3:27368483-27368648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
59, 98
               

               
Conread position:
               
158-320
               

               
Cow position:
               
chr3:32248195-32248032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-325
               

               
Cow position:
               
chr3:66354862-66354695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
94, 29
               

               
Conread position:
               
158-327
               

               
Cow position:
               
chr3:39603355-39603525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-329
               

               
Cow position:
               
chr3:34931618-34931790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
144, 90
               

               
Conread position:
               
158-333
               

               
Cow position:
               
chr3:2258061-2257886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-333
               

               
Cow position:
               
chr3:53249665-53249501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
143, 10
               

               
Conread position:
               
158-335
               

               
Cow position:
               
chr3:64909914-64910090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
143, 91
               

               
Conread position:
               
158-336
               

               
Cow position:
               
chr3:8871900-8871722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
142, 96
               

               
Conread position:
               
158-337
               

               
Cow position:
               
chr3:75871662-75871482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-339
               

               
Cow position:
               
chr3:22924200-22924373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
138, 10
               

               
Conread position:
               
158-340
               

               
Cow position:
               
chr3:8522975-8523154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
143, 11
               

               
Conread position:
               
158-340
               

               
Cow position:
               
chr3:75908090-75907912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
158-341
               

               
Cow position:
               
chr3:4071588-4071770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-341
               

               
Cow position:
               
chr3:59820090-59819906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-342
               

               
Cow position:
               
chr3:17105850-17105667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
142, 96
               

               
Conread position:
               
158-342
               

               
Cow position:
               
chr3:21959845-21959658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
83, 17
               

               
Conread position:
               
158-343
               

               
Cow position:
               
chr3:46259893-46259708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-343
               

               
Cow position:
               
chr3:69785439-69785626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
102, 69
               

               
Conread position:
               
158-344
               

               
Cow position:
               
chr3:24220399-24220581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
158-344
               

               
Cow position:
               
chr3:76300955-76300767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
147, 96
               

               
Conread position:
               
158-345
               

               
Cow position:
               
chr3:6182054-6182232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
143, 11
               

               
Conread position:
               
158-345
               

               
Cow position:
               
chr3:25904858-25905047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 84
               

               
Conread position:
               
158-345
               

               
Cow position:
               
chr3:55734139-55733952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
141, 102
               

               
Conread position:
               
158-346
               

               
Cow position:
               
chr3:26337835-26338025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
52, 97
               

               
Conread position:
               
158-346
               

               
Cow position:
               
chr3:28905154-28904965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-346
               

               
Cow position:
               
chr3:75183499-75183303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr3:53266659-53266471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
144, 41
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr3:55730285-55730475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr3:59616872-59617071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr3:71474226-71474410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
143, 78
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr3:80958329-80958517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
144, 9
               

               
Conread position:
               
158-350
               

               
Cow position:
               
chr3:62186339-62186142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
158-354
               

               
Cow position:
               
chr3:51150311-51150115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 29
               

               
Conread position:
               
158-358
               

               
Cow position:
               
chr3:11027458-11027257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-358
               

               
Cow position:
               
chr3:54557847-54557657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
143, 70
               

               
Conread position:
               
158-358
               

               
Cow position:
               
chr3:68289863-68289659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
108, 9
               

               
Conread position:
               
158-358
               

               
Cow position:
               
chr3:78071612-78071809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
140, 10
               

               
Conread position:
               
158-358
               

               
Cow position:
               
chr3:83770915-83770714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr3:5707029-5707231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr3:8775501-8775300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr3:13240892-13241094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr3:18699927-18700129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr3:22668593-22668392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr3:22845086-22844885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
120, 96
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr3:22887745-22887947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr3:26505413-26505605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr3:31055832-31056031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
144, 40
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr3:32310232-32310434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr3:44960126-44959924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr3:46271605-46271807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
144, 109
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr3:47198945-47199145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 35
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr3:58134503-58134704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr3:73943691-73943892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
144, 59
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr3:83705354-83705555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr3:84174485-84174283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-360
               

               
Cow position:
               
chr3:9117216-9117008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
13, 177
               

               
Conread position:
               
158-360
               

               
Cow position:
               
chr3:11229189-11229384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
158-360
               

               
Cow position:
               
chr3:12669319-12669117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
88, 9
               

               
Conread position:
               
158-360
               

               
Cow position:
               
chr3:27246786-27246978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
143, 73
               

               
Conread position:
               
158-360
               

               
Cow position:
               
chr3:59681727-59681923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
143, 9
               

               
Conread position:
               
158-360
               

               
Cow position:
               
chr3:72342429-72342226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-360
               

               
Cow position:
               
chr3:75966601-75966800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
122, 80
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr3:5703356-5703158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr3:13882337-13882541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr3:18479115-18479318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
141, 102
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr3:23203048-23203251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr3:59947849-59947645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr3:75050442-75050637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
147, 29
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr3:76056107-76056305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
144, 73
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr3:79339395-79339599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
57, 84
               

               
Conread position:
               
158-364
               

               
Cow position:
               
chr3:59885712-59885518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
144, 67
               

               
Conread position:
               
158-369
               

               
Cow position:
               
chr3:5305985-5305770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 39
               

               
Conread position:
               
158-370
               

               
Cow position:
               
chr3:76270069-76269863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
146, 78
               

               
Conread position:
               
158-382
               

               
Cow position:
               
chr3:19900836-19900611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
162, 10
               

               
Conread position:
               
158-388
               

               
Cow position:
               
chr3:7581537-7581765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
83, 43
               

               
Conread position:
               
158-388
               

               
Cow position:
               
chr3:70333788-70334012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-389
               

               
Cow position:
               
chr3:59299757-59299524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
158-390
               

               
Cow position:
               
chr3:1011673-1011437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
98, 113
               

               
Conread position:
               
158-392
               

               
Cow position:
               
chr3:57776978-57776744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
205, 96
               

               
Conread position:
               
158-406
               

               
Cow position:
               
chr3:77671301-77671555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
144, 39
               

               
Conread position:
               
158-409
               

               
Cow position:
               
chr3:20663361-20663616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 195
               

               
Conread position:
               
158-484
               

               
Cow position:
               
chr3:30026555-30026232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
35, 100
               

               
Conread position:
               
158-484
               

               
Cow position:
               
chr3:59605021-59604705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
143, 11
               

               
Conread position:
               
158-514
               

               
Cow position:
               
chr3:55819929-55819572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
252, 9
               

               
Conread position:
               
158-516
               

               
Cow position:
               
chr3:62046851-62046485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
94, 9
               

               
Conread position:
               
158-522
               

               
Cow position:
               
chr3:5365845-5365488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
144, 10
               

               
Conread position:
               
158-522
               

               
Cow position:
               
chr3:26739243-26739603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
205, 102
               

               
Conread position:
               
158-522
               

               
Cow position:
               
chr3:75853154-75853514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
144, 43
               

               
Conread position:
               
158-525
               

               
Cow position:
               
chr3:13890664-13890281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
33, 98
               

               
Conread position:
               
158-526
               

               
Cow position:
               
chr3:59597355-59596998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
11, 83
               

               
Conread position:
               
158-528
               

               
Cow position:
               
chr3:76267794-76268169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
143, 16
               

               
Conread position:
               
158-532
               

               
Cow position:
               
chr3:36418306-36418659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
143, 82
               

               
Conread position:
               
158-545
               

               
Cow position:
               
chr3:67519995-67520379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
144, 82
               

               
Conread position:
               
158-550
               

               
Cow position:
               
chr3:8591187-8591570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
144, 257
               

               
Conread position:
               
158-551
               

               
Cow position:
               
chr3:45279650-45279251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
147, 96
               

               
Conread position:
               
158-557
               

               
Cow position:
               
chr3:54946302-54945909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
144, 32
               

               
Conread position:
               
158-558
               

               
Cow position:
               
chr3:2392788-2393182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
143, 78
               

               
Conread position:
               
158-558
               

               
Cow position:
               
chr3:11253984-11254366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-558
               

               
Cow position:
               
chr3:39661273-39661666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-558
               

               
Cow position:
               
chr3:57754295-57754700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 9
               

               
Conread position:
               
158-558
               

               
Cow position:
               
chr3:59333940-59333551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 73
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr3:13899273-13899670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr3:23471282-23471685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 55
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr3:25690981-25690568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 216
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr3:27274706-27274316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
147, 11
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr3:30008725-30009127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
141, 59
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr3:31297976-31298377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
120, 93
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr3:48851786-48852185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr3:49118849-49119248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
144, 109
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr3:54903748-54903351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
144, 109
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr3:67744459-67744844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
18, 38
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr3:67929078-67929485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
144, 65
               

               
Conread position:
               
158-565
               

               
Cow position:
               
chr3:29891223-29891641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
13, 98
               

               
Conread position:
               
159-256
               

               
Cow position:
               
chr3:31804591-31804687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
159-274
               

               
Cow position:
               
chr3:51478908-51479023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
159-275
               

               
Cow position:
               
chr3:26373852-26373967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
87, 101
               

               
Conread position:
               
159-279
               

               
Cow position:
               
chr3:49823500-49823381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
159-280
               

               
Cow position:
               
chr3:37564364-37564484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
159-284
               

               
Cow position:
               
chr3:2434559-2434679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
159-311
               

               
Cow position:
               
chr3:20888481-20888633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
159-319
               

               
Cow position:
               
chr3:51543619-51543456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
159-327
               

               
Cow position:
               
chr3:66884851-66885016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
139, 8
               

               
Conread position:
               
159-329
               

               
Cow position:
               
chr3:19641244-19641069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
93, 9
               

               
Conread position:
               
159-342
               

               
Cow position:
               
chr3:6049107-6049290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 8
               

               
Conread position:
               
159-342
               

               
Cow position:
               
chr3:11023634-11023443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
82, 171
               

               
Conread position:
               
159-343
               

               
Cow position:
               
chr3:35883752-35883937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
144, 95
               

               
Conread position:
               
159-344
               

               
Cow position:
               
chr3:38248836-38248653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
143, 167
               

               
Conread position:
               
159-344
               

               
Cow position:
               
chr3:39912507-39912686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
143, 39
               

               
Conread position:
               
159-345
               

               
Cow position:
               
chr3:18180143-18179954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
74, 110
               

               
Conread position:
               
159-345
               

               
Cow position:
               
chr3:42434149-42434334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
143, 8
               

               
Conread position:
               
159-345
               

               
Cow position:
               
chr3:46146549-46146731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
143, 37
               

               
Conread position:
               
159-345
               

               
Cow position:
               
chr3:70676411-70676225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
159-346
               

               
Cow position:
               
chr3:75687750-75687937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
143, 15
               

               
Conread position:
               
159-347
               

               
Cow position:
               
chr3:16710616-16710806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
50, 104
               

               
Conread position:
               
159-347
               

               
Cow position:
               
chr3:21694407-21694218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
143, 61
               

               
Conread position:
               
159-347
               

               
Cow position:
               
chr3:28323390-28323210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
142, 66
               

               
Conread position:
               
159-347
               

               
Cow position:
               
chr3:38331430-38331618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
138, 100
               

               
Conread position:
               
159-347
               

               
Cow position:
               
chr3:76156165-76155981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
139, 9
               

               
Conread position:
               
159-348
               

               
Cow position:
               
chr3:4268394-4268583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
159-348
               

               
Cow position:
               
chr3:58558462-58558272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
159-350
               

               
Cow position:
               
chr3:2016611-2016426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
143, 8
               

               
Conread position:
               
159-353
               

               
Cow position:
               
chr3:20911231-20911422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
143, 37
               

               
Conread position:
               
159-357
               

               
Cow position:
               
chr3:6265970-6265769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
159-359
               

               
Cow position:
               
chr3:59945307-59945106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
159-360
               

               
Cow position:
               
chr3:39812238-39812030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
93, 9
               

               
Conread position:
               
159-361
               

               
Cow position:
               
chr3:43388945-43389148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
159-366
               

               
Cow position:
               
chr3:24516026-24516236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
159-367
               

               
Cow position:
               
chr3:4518004-4518205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
142, 77
               

               
Conread position:
               
159-367
               

               
Cow position:
               
chr3:30266515-30266718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
174, 8
               

               
Conread position:
               
159-368
               

               
Cow position:
               
chr3:72027819-72027610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
140, 101
               

               
Conread position:
               
159-369
               

               
Cow position:
               
chr3:16752073-16752286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
11, 98
               

               
Conread position:
               
159-370
               

               
Cow position:
               
chr3:30357689-30357493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
143, 75
               

               
Conread position:
               
159-371
               

               
Cow position:
               
chr3:28896841-28897049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
140, 93
               

               
Conread position:
               
159-389
               

               
Cow position:
               
chr3:54067974-54067749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
143, 36
               

               
Conread position:
               
159-391
               

               
Cow position:
               
chr3:66014498-66014262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 185
               

               
Conread position:
               
159-483
               

               
Cow position:
               
chr3:47417390-47417709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
17, 96
               

               
Conread position:
               
159-485
               

               
Cow position:
               
chr3:48900151-48900483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
142, 9
               

               
Conread position:
               
159-524
               

               
Cow position:
               
chr3:53318590-53318218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
72, 136
               

               
Conread position:
               
159-546
               

               
Cow position:
               
chr3:53271012-53270622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 17
               

               
Conread position:
               
159-558
               

               
Cow position:
               
chr3:23168888-23169286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
142, 36
               

               
Conread position:
               
159-558
               

               
Cow position:
               
chr3:44932692-44932292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
163, 80
               

               
Conread position:
               
159-559
               

               
Cow position:
               
chr3:2506297-2506698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 9
               

               
Conread position:
               
159-559
               

               
Cow position:
               
chr3:2518361-2518754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
48, 72
               

               
Conread position:
               
159-559
               

               
Cow position:
               
chr3:7763838-7763447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
159-559
               

               
Cow position:
               
chr3:31225602-31225232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
143, 46
               

               
Conread position:
               
159-559
               

               
Cow position:
               
chr3:58540337-58540750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
96, 162
               

               
Conread position:
               
160-300
               

               
Cow position:
               
chr3:72626563-72626703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
160-341
               

               
Cow position:
               
chr3:59810249-59810429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
142, 7
               

               
Conread position:
               
160-343
               

               
Cow position:
               
chr3:562610-562796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 59
               

               
Conread position:
               
160-343
               

               
Cow position:
               
chr3:62864257-62864073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
142, 124
               

               
Conread position:
               
160-359
               

               
Cow position:
               
chr3:1788118-1787918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
142, 94
               

               
Conread position:
               
160-359
               

               
Cow position:
               
chr3:7860071-7860271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
142, 94
               

               
Conread position:
               
160-360
               

               
Cow position:
               
chr3:45314531-45314325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
78, 99
               

               
Conread position:
               
160-361
               

               
Cow position:
               
chr3:26792633-26792454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
142, 31
               

               
Conread position:
               
160-361
               

               
Cow position:
               
chr3:61169991-61169784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 170
               

               
Conread position:
               
160-364
               

               
Cow position:
               
chr3:70402816-70402621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
141, 7
               

               
Conread position:
               
160-495
               

               
Cow position:
               
chr3:24468205-24468535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 38
               

               
Conread position:
               
160-523
               

               
Cow position:
               
chr3:54506886-54506525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 75
               

               
Conread position:
               
160-557
               

               
Cow position:
               
chr3:49460747-49461152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
142, 52
               

               
Conread position:
               
160-559
               

               
Cow position:
               
chr3:17694823-17695222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
142, 94
               

               
Conread position:
               
160-559
               

               
Cow position:
               
chr3:48363249-48362864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
5, 87
               

               
Conread position:
               
160-559
               

               
Cow position:
               
chr3:52608358-52607966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 23
               

               
Conread position:
               
160-559
               

               
Cow position:
               
chr3:52651901-52652291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 74
               

               
Conread position:
               
161-303
               

               
Cow position:
               
chr3:35586011-35585871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
161-320
               

               
Cow position:
               
chr3:5696551-5696714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 56
               

               
Conread position:
               
161-325
               

               
Cow position:
               
chr3:2637123-2636964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
121, 42
               

               
Conread position:
               
161-326
               

               
Cow position:
               
chr3:3453760-3453594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
141, 92
               

               
Conread position:
               
161-330
               

               
Cow position:
               
chr3:55105968-55106138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
141, 99
               

               
Conread position:
               
161-337
               

               
Cow position:
               
chr3:67942355-67942532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
141, 90
               

               
Conread position:
               
161-340
               

               
Cow position:
               
chr3:76133833-76134014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 34
               

               
Conread position:
               
161-344
               

               
Cow position:
               
chr3:8147345-8147528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
110, 62
               

               
Conread position:
               
161-346
               

               
Cow position:
               
chr3:3275773-3275591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
141, 70
               

               
Conread position:
               
161-346
               

               
Cow position:
               
chr3:19586041-19585859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
140, 7
               

               
Conread position:
               
161-346
               

               
Cow position:
               
chr3:52845733-52845551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
140, 75
               

               
Conread position:
               
161-346
               

               
Cow position:
               
chr3:62789772-62789961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
161-356
               

               
Cow position:
               
chr3:84154583-84154400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
141, 73
               

               
Conread position:
               
161-357
               

               
Cow position:
               
chr3:20033969-20034165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
141, 90
               

               
Conread position:
               
161-359
               

               
Cow position:
               
chr3:33330012-33329799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
161-360
               

               
Cow position:
               
chr3:15443548-15443749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-360
               

               
Cow position:
               
chr3:48483355-48483159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
141, 14
               

               
Conread position:
               
161-360
               

               
Cow position:
               
chr3:61224571-61224763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
104, 125
               

               
Conread position:
               
161-361
               

               
Cow position:
               
chr3:45667165-45667366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
141, 68
               

               
Conread position:
               
161-370
               

               
Cow position:
               
chr3:37041592-37041390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
138, 8
               

               
Conread position:
               
161-386
               

               
Cow position:
               
chr3:63336671-63336447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-393
               

               
Cow position:
               
chr3:21642173-21641936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
161-540
               

               
Cow position:
               
chr3:38035410-38035790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
141, 121
               

               
Conread position:
               
161-551
               

               
Cow position:
               
chr3:8393517-8393137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
237, 22
               

               
Conread position:
               
161-559
               

               
Cow position:
               
chr3:18067308-18066917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 35
               

               
Conread position:
               
161-559
               

               
Cow position:
               
chr3:20130115-20129725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-559
               

               
Cow position:
               
chr3:31419873-31419484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-559
               

               
Cow position:
               
chr3:45183643-45184063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 283
               

               
Conread position:
               
161-559
               

               
Cow position:
               
chr3:46005837-46006248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 162
               

               
Conread position:
               
161-559
               

               
Cow position:
               
chr3:51578146-51578538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 74
               

               
Conread position:
               
162-280
               

               
Cow position:
               
chr3:75974903-75975019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
162-282
               

               
Cow position:
               
chr3:1498120-1498001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
162-283
               

               
Cow position:
               
chr3:3887463-3887580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
162-286
               

               
Cow position:
               
chr3:49369786-49369668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
162-295
               

               
Cow position:
               
chr3:76138635-76138505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
162-296
               

               
Cow position:
               
chr3:70632324-70632191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
162-320
               

               
Cow position:
               
chr3:16107198-16107346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
140, 33
               

               
Conread position:
               
162-325
               

               
Cow position:
               
chr3:58929355-58929519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
162-345
               

               
Cow position:
               
chr3:54781816-54782007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 116
               

               
Conread position:
               
162-345
               

               
Cow position:
               
chr3:56583025-56582844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
140, 98
               

               
Conread position:
               
162-345
               

               
Cow position:
               
chr3:63845117-63844933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
141, 98
               

               
Conread position:
               
162-346
               

               
Cow position:
               
chr3:80923242-80923074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
162-347
               

               
Cow position:
               
chr3:29334234-29334420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
124, 13
               

               
Conread position:
               
162-359
               

               
Cow position:
               
chr3:23037331-23037527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
139, 52
               

               
Conread position:
               
162-359
               

               
Cow position:
               
chr3:41863799-41863607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
140, 69
               

               
Conread position:
               
162-359
               

               
Cow position:
               
chr3:43585481-43585288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
140, 92
               

               
Conread position:
               
162-359
               

               
Cow position:
               
chr3:47316201-47316396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
110, 76
               

               
Conread position:
               
162-360
               

               
Cow position:
               
chr3:52457086-52456899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
139, 35
               

               
Conread position:
               
162-361
               

               
Cow position:
               
chr3:22221503-22221308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
137, 72
               

               
Conread position:
               
162-361
               

               
Cow position:
               
chr3:46559539-46559735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
139, 65
               

               
Conread position:
               
162-361
               

               
Cow position:
               
chr3:59702351-59702151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
93, 162
               

               
Conread position:
               
162-367
               

               
Cow position:
               
chr3:2648331-2648537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 97
               

               
Conread position:
               
162-370
               

               
Cow position:
               
chr3:54905783-54905589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
140, 63
               

               
Conread position:
               
162-370
               

               
Cow position:
               
chr3:74644737-74644527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
139, 92
               

               
Conread position:
               
162-406
               

               
Cow position:
               
chr3:82084998-82084754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
100, 27
               

               
Conread position:
               
162-409
               

               
Cow position:
               
chr3:54100535-54100804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
162-544
               

               
Cow position:
               
chr3:1517336-1517717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
139, 69
               

               
Conread position:
               
163-280
               

               
Cow position:
               
chr3:31555110-31554996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
61, 95
               

               
Conread position:
               
163-300
               

               
Cow position:
               
chr3:72291410-72291275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
163-320
               

               
Cow position:
               
chr3:22078254-22078096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
138, 91
               

               
Conread position:
               
163-320
               

               
Cow position:
               
chr3:33460423-33460588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
163-324
               

               
Cow position:
               
chr3:2636758-2636913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
163-326
               

               
Cow position:
               
chr3:18764281-18764116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
97, 83
               

               
Conread position:
               
163-330
               

               
Cow position:
               
chr3:77098648-77098812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
139, 82
               

               
Conread position:
               
163-332
               

               
Cow position:
               
chr3:44594799-44594630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
136, 11
               

               
Conread position:
               
163-340
               

               
Cow position:
               
chr3:8975023-8974845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
139, 91
               

               
Conread position:
               
163-342
               

               
Cow position:
               
chr3:64527022-64526847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
139, 32
               

               
Conread position:
               
163-343
               

               
Cow position:
               
chr3:60371160-60370980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
139, 44
               

               
Conread position:
               
163-344
               

               
Cow position:
               
chr3:80173175-80172996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
136, 87
               

               
Conread position:
               
163-345
               

               
Cow position:
               
chr3:54350258-54350445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
163-345
               

               
Cow position:
               
chr3:64800371-64800554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
142, 99
               

               
Conread position:
               
163-345
               

               
Cow position:
               
chr3:78258574-78258759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 110
               

               
Conread position:
               
163-347
               

               
Cow position:
               
chr3:23131992-23132175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
134, 91
               

               
Conread position:
               
163-347
               

               
Cow position:
               
chr3:42796342-42796529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
138, 96
               

               
Conread position:
               
163-348
               

               
Cow position:
               
chr3:37641502-37641318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
135, 86
               

               
Conread position:
               
163-355
               

               
Cow position:
               
chr3:61680493-61680301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
139, 97
               

               
Conread position:
               
163-356
               

               
Cow position:
               
chr3:12178237-12178041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
82, 99
               

               
Conread position:
               
163-358
               

               
Cow position:
               
chr3:83672030-83671838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
146, 5
               

               
Conread position:
               
163-359
               

               
Cow position:
               
chr3:4271541-4271354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
139, 33
               

               
Conread position:
               
163-359
               

               
Cow position:
               
chr3:6288363-6288560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
139, 88
               

               
Conread position:
               
163-360
               

               
Cow position:
               
chr3:53604568-53604765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
139, 87
               

               
Conread position:
               
163-360
               

               
Cow position:
               
chr3:81923617-81923818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
74, 61
               

               
Conread position:
               
163-361
               

               
Cow position:
               
chr3:4120195-4120386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
139, 72
               

               
Conread position:
               
163-361
               

               
Cow position:
               
chr3:9718074-9718271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
138, 5
               

               
Conread position:
               
163-361
               

               
Cow position:
               
chr3:14517905-14518099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
108, 62
               

               
Conread position:
               
163-361
               

               
Cow position:
               
chr3:22888838-22889037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
136, 57
               

               
Conread position:
               
163-361
               

               
Cow position:
               
chr3:58101851-58101659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
163-366
               

               
Cow position:
               
chr3:35075048-35074853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
136, 68
               

               
Conread position:
               
163-370
               

               
Cow position:
               
chr3:2638109-2637897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
163-379
               

               
Cow position:
               
chr3:33002561-33002350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
81, 102
               

               
Conread position:
               
163-380
               

               
Cow position:
               
chr3:21866862-21867077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
139, 58
               

               
Conread position:
               
163-511
               

               
Cow position:
               
chr3:23920250-23920602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
139, 91
               

               
Conread position:
               
163-522
               

               
Cow position:
               
chr3:55189574-55189939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
91, 66
               

               
Conread position:
               
163-525
               

               
Cow position:
               
chr3:67929994-67930368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
74, 179
               

               
Conread position:
               
163-541
               

               
Cow position:
               
chr3:38828927-38828563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
280, 51
               

               
Conread position:
               
163-557
               

               
Cow position:
               
chr3:189051-188644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
139, 97
               

               
Conread position:
               
163-557
               

               
Cow position:
               
chr3:73395290-73394901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 5
               

               
Conread position:
               
163-558
               

               
Cow position:
               
chr3:78092335-78092726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
135, 77
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr3:14553048-14552661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 81
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr3:15228665-15229036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
138, 46
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr3:17134507-17134122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
139, 79
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr3:18393224-18393601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
10, 90
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr3:18459361-18459737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
140, 32
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr3:23734913-23735320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
139, 84
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr3:31309178-31309572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 32
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr3:33252716-33253098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 66
               

               
Conread position:
               
163-562
               

               
Cow position:
               
chr3:23105189-23105586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
138, 82
               

               
Conread position:
               
164-258
               

               
Cow position:
               
chr3:62739380-62739286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
164-285
               

               
Cow position:
               
chr3:33331-33453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
83, 98
               

               
Conread position:
               
164-295
               

               
Cow position:
               
chr3:66563960-66563828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
124, 96
               

               
Conread position:
               
164-296
               

               
Cow position:
               
chr3:32436813-32436682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
37, 90
               

               
Conread position:
               
164-318
               

               
Cow position:
               
chr3:621616-621457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
164-319
               

               
Cow position:
               
chr3:37575397-37575557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
23, 94
               

               
Conread position:
               
164-319
               

               
Cow position:
               
chr3:44218943-44218787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
138, 87
               

               
Conread position:
               
164-320
               

               
Cow position:
               
chr3:22868541-22868699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
137, 65
               

               
Conread position:
               
164-320
               

               
Cow position:
               
chr3:43016265-43016430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
164-334
               

               
Cow position:
               
chr3:34142537-34142703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
133, 63
               

               
Conread position:
               
164-336
               

               
Cow position:
               
chr3:26977712-26977539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
134, 31
               

               
Conread position:
               
164-342
               

               
Cow position:
               
chr3:22675933-22676111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
98, 11
               

               
Conread position:
               
164-343
               

               
Cow position:
               
chr3:51153219-51153047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
140, 41
               

               
Conread position:
               
164-344
               

               
Cow position:
               
chr3:20996827-20997007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
138, 77
               

               
Conread position:
               
164-345
               

               
Cow position:
               
chr3:21112467-21112642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
164-346
               

               
Cow position:
               
chr3:75107947-75107769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
137, 73
               

               
Conread position:
               
164-347
               

               
Cow position:
               
chr3:11281944-11281760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
135, 96
               

               
Conread position:
               
164-347
               

               
Cow position:
               
chr3:44207702-44207884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
164-347
               

               
Cow position:
               
chr3:55177576-55177752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
137, 80
               

               
Conread position:
               
164-347
               

               
Cow position:
               
chr3:58614639-58614450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
67, 94
               

               
Conread position:
               
164-347
               

               
Cow position:
               
chr3:73335454-73335278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
138, 32
               

               
Conread position:
               
164-354
               

               
Cow position:
               
chr3:25702156-25702355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
164-357
               

               
Cow position:
               
chr3:25735728-25735922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
138, 87
               

               
Conread position:
               
164-359
               

               
Cow position:
               
chr3:29234503-29234700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
82, 28
               

               
Conread position:
               
164-361
               

               
Cow position:
               
chr3:8181774-8181971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
89, 150
               

               
Conread position:
               
164-361
               

               
Cow position:
               
chr3:10841991-10841792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
138, 96
               

               
Conread position:
               
164-361
               

               
Cow position:
               
chr3:61023846-61024043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 11
               

               
Conread position:
               
164-370
               

               
Cow position:
               
chr3:68303493-68303286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
138, 187
               

               
Conread position:
               
164-389
               

               
Cow position:
               
chr3:6299633-6299409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
138, 32
               

               
Conread position:
               
164-391
               

               
Cow position:
               
chr3:49996542-49996773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
100, 96
               

               
Conread position:
               
164-393
               

               
Cow position:
               
chr3:59610544-59610770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
137, 61
               

               
Conread position:
               
164-518
               

               
Cow position:
               
chr3:70761948-70762302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
134, 76
               

               
Conread position:
               
164-538
               

               
Cow position:
               
chr3:53910281-53909913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 31
               

               
Conread position:
               
164-548
               

               
Cow position:
               
chr3:54373682-54374070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
138, 90
               

               
Conread position:
               
164-556
               

               
Cow position:
               
chr3:83699693-83700089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
138, 86
               

               
Conread position:
               
164-557
               

               
Cow position:
               
chr3:53222187-53221799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
119, 68
               

               
Conread position:
               
164-557
               

               
Cow position:
               
chr3:68648352-68647945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 107
               

               
Conread position:
               
164-559
               

               
Cow position:
               
chr3:43233678-43233286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
138, 72
               

               
Conread position:
               
165-390
               

               
Cow position:
               
chr3:59040745-59040519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
166-289
               

               
Cow position:
               
chr3:72649813-72649937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
166-293
               

               
Cow position:
               
chr3:17952765-17952643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
166-347
               

               
Cow position:
               
chr3:67737493-67737311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
136, 96
               

               
Conread position:
               
166-358
               

               
Cow position:
               
chr3:21014783-21014975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
136, 32
               

               
Conread position:
               
166-358
               

               
Cow position:
               
chr3:22734088-22734283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
132, 29
               

               
Conread position:
               
166-485
               

               
Cow position:
               
chr3:59035216-59034892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
136, 88
               

               
Conread position:
               
166-557
               

               
Cow position:
               
chr3:30463003-30463381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 43
               

               
Conread position:
               
167-258
               

               
Cow position:
               
chr3:72910903-72910994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
167-279
               

               
Cow position:
               
chr3:52147269-52147380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
66, 51
               

               
Conread position:
               
167-291
               

               
Cow position:
               
chr3:23733298-23733420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
50, 24
               

               
Conread position:
               
167-294
               

               
Cow position:
               
chr3:79877202-79877075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
167-309
               

               
Cow position:
               
chr3:34392053-34392188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
135, 64
               

               
Conread position:
               
167-314
               

               
Cow position:
               
chr3:42484099-42483953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
135, 28
               

               
Conread position:
               
167-315
               

               
Cow position:
               
chr3:69849126-69849267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
135, 64
               

               
Conread position:
               
167-346
               

               
Cow position:
               
chr3:10958072-10958245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
134, 29
               

               
Conread position:
               
167-347
               

               
Cow position:
               
chr3:39996722-39996897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
135, 8
               

               
Conread position:
               
167-354
               

               
Cow position:
               
chr3:83988706-83988520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
85, 28
               

               
Conread position:
               
167-360
               

               
Cow position:
               
chr3:15160689-15160501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
131, 73
               

               
Conread position:
               
167-495
               

               
Cow position:
               
chr3:77582278-77581952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
97, 73
               

               
Conread position:
               
167-540
               

               
Cow position:
               
chr3:65237195-65236821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
131, 67
               

               
Conread position:
               
167-540
               

               
Cow position:
               
chr3:77188612-77188240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
135, 92
               

               
Conread position:
               
167-547
               

               
Cow position:
               
chr3:74234353-74233987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
134, 22
               

               
Conread position:
               
167-554
               

               
Cow position:
               
chr3:4319891-4319498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 230
               

               
Conread position:
               
167-557
               

               
Cow position:
               
chr3:20802468-20802845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
135, 81
               

               
Conread position:
               
167-559
               

               
Cow position:
               
chr3:2538409-2538034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
135, 69
               

               
Conread position:
               
168-286
               

               
Cow position:
               
chr3:84601586-84601703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
168-330
               

               
Cow position:
               
chr3:74515165-74515327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
131, 62
               

               
Conread position:
               
168-341
               

               
Cow position:
               
chr3:4931659-4931841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
60, 99
               

               
Conread position:
               
168-346
               

               
Cow position:
               
chr3:3883649-3883820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
126, 68
               

               
Conread position:
               
168-347
               

               
Cow position:
               
chr3:31361594-31361419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
133, 62
               

               
Conread position:
               
168-347
               

               
Cow position:
               
chr3:53150504-53150325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
134, 68
               

               
Conread position:
               
168-360
               

               
Cow position:
               
chr3:14547170-14546983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
139, 78
               

               
Conread position:
               
168-366
               

               
Cow position:
               
chr3:80023144-80023334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
133, 30
               

               
Conread position:
               
168-380
               

               
Cow position:
               
chr3:9121013-9120806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
130, 28
               

               
Conread position:
               
168-409
               

               
Cow position:
               
chr3:17058376-17058624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
133, 66
               

               
Conread position:
               
168-548
               

               
Cow position:
               
chr3:60597708-60597339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
107, 63
               

               
Conread position:
               
169-359
               

               
Cow position:
               
chr3:5149782-5149973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
133, 85
               

               
Conread position:
               
169-361
               

               
Cow position:
               
chr3:31793711-31793904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
133, 91
               

               
Conread position:
               
169-361
               

               
Cow position:
               
chr3:59272001-59271813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
133, 80
               

               
Conread position:
               
169-361
               

               
Cow position:
               
chr3:63860440-63860631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
133, 66
               

               
Conread position:
               
169-479
               

               
Cow position:
               
chr3:13380108-13380426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
133, 62
               

               
Conread position:
               
170-361
               

               
Cow position:
               
chr3:49679303-49679112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
132, 82
               

               
Conread position:
               
170-366
               

               
Cow position:
               
chr3:82195653-82195461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
171-311
               

               
Cow position:
               
chr3:6547594-6547453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
131, 82
               

               
Conread position:
               
171-559
               

               
Cow position:
               
chr3:57577864-57577477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 38
               

               
Conread position:
               
174-327
               

               
Cow position:
               
chr3:53552819-53552966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
127, 76
               

               
Conread position:
               
174-345
               

               
Cow position:
               
chr3:6579645-6579480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
123, 21
               

               
Conread position:
               
174-347
               

               
Cow position:
               
chr3:15792261-15792086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 87
               

               
Conread position:
               
174-360
               

               
Cow position:
               
chr3:2484167-2483983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
33, 69
               

               
Conread position:
               
174-361
               

               
Cow position:
               
chr3:51609019-51609206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
125, 86
               

               
Conread position:
               
175-297
               

               
Cow position:
               
chr3:76300711-76300595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
175-324
               

               
Cow position:
               
chr3:56932618-56932461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
175-329
               

               
Cow position:
               
chr3:74500421-74500273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
126, 46
               

               
Conread position:
               
175-335
               

               
Cow position:
               
chr3:23753648-23753497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
124, 61
               

               
Conread position:
               
175-345
               

               
Cow position:
               
chr3:20021432-20021265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
126, 59
               

               
Conread position:
               
175-360
               

               
Cow position:
               
chr3:49363271-49363090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
126, 54
               

               
Conread position:
               
175-360
               

               
Cow position:
               
chr3:82366293-82366108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
124, 62
               

               
Conread position:
               
175-361
               

               
Cow position:
               
chr3:12090841-12090655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
79, 151
               

               
Conread position:
               
175-361
               

               
Cow position:
               
chr3:44534370-44534551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
127, 52
               

               
Conread position:
               
175-365
               

               
Cow position:
               
chr3:46305626-46305437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
47, 83
               

               
Conread position:
               
175-368
               

               
Cow position:
               
chr3:77171482-77171289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
127, 85
               

               
Conread position:
               
175-370
               

               
Cow position:
               
chr3:81087472-81087665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
112, 79
               

               
Conread position:
               
175-371
               

               
Cow position:
               
chr3:62312962-62312765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
86, 75
               

               
Conread position:
               
175-371
               

               
Cow position:
               
chr3:62370221-62370024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
86, 75
               

               
Conread position:
               
175-388
               

               
Cow position:
               
chr3:10668715-10668927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
105, 64
               

               
Conread position:
               
175-391
               

               
Cow position:
               
chr3:7662021-7661806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
77, 157
               

               
Conread position:
               
175-488
               

               
Cow position:
               
chr3:79196927-79196610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
126, 228
               

               
Conread position:
               
175-543
               

               
Cow position:
               
chr3:17221969-17222349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 246
               

               
Conread position:
               
175-550
               

               
Cow position:
               
chr3:72255254-72255652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
127, 79
               

               
Conread position:
               
175-554
               

               
Cow position:
               
chr3:14465551-14465920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
127, 20
               

               
Conread position:
               
175-558
               

               
Cow position:
               
chr3:51233940-51234312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
126, 64
               

               
Conread position:
               
175-559
               

               
Cow position:
               
chr3:56476838-56476465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
126, 36
               

               
Conread position:
               
175-559
               

               
Cow position:
               
chr3:59000599-59000963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
127, 67
               

               
Conread position:
               
175-559
               

               
Cow position:
               
chr3:64010644-64011034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 115
               

               
Conread position:
               
176-295
               

               
Cow position:
               
chr3:44775578-44775452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
176-315
               

               
Cow position:
               
chr3:57336942-57336800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
13, 86
               

               
Conread position:
               
176-325
               

               
Cow position:
               
chr3:10115458-10115313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
145, 74
               

               
Conread position:
               
176-325
               

               
Cow position:
               
chr3:57706589-57706741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 86
               

               
Conread position:
               
176-342
               

               
Cow position:
               
chr3:653916-654083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
176-347
               

               
Cow position:
               
chr3:26603383-26603558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
176-350
               

               
Cow position:
               
chr3:1028484-1028657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
126, 82
               

               
Conread position:
               
176-354
               

               
Cow position:
               
chr3:83812441-83812259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 101
               

               
Conread position:
               
176-358
               

               
Cow position:
               
chr3:84250386-84250557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
123, 58
               

               
Conread position:
               
176-359
               

               
Cow position:
               
chr3:59828225-59828411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
176-370
               

               
Cow position:
               
chr3:75238623-75238428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
176-407
               

               
Cow position:
               
chr3:40145630-40145385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
176-497
               

               
Cow position:
               
chr3:19793427-19793751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 73
               

               
Conread position:
               
176-557
               

               
Cow position:
               
chr3:53046495-53046872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 80
               

               
Conread position:
               
176-559
               

               
Cow position:
               
chr3:63180027-63179651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
176-559
               

               
Cow position:
               
chr3:66900564-66900959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 13
               

               
Conread position:
               
177-338
               

               
Cow position:
               
chr3:70319641-70319802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
121, 7
               

               
Conread position:
               
177-345
               

               
Cow position:
               
chr3:423533-423364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
125, 83
               

               
Conread position:
               
177-345
               

               
Cow position:
               
chr3:74119268-74119433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
122, 21
               

               
Conread position:
               
177-360
               

               
Cow position:
               
chr3:9025920-9026105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
177-360
               

               
Cow position:
               
chr3:48477881-48478050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
177-533
               

               
Cow position:
               
chr3:75158517-75158165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
249, 18
               

               
Conread position:
               
177-559
               

               
Cow position:
               
chr3:7566259-7566636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
125, 63
               

               
Conread position:
               
178-360
               

               
Cow position:
               
chr3:52643771-52643953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
40, 77
               

               
Conread position:
               
178-361
               

               
Cow position:
               
chr3:1889945-1890129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
124, 76
               

               
Conread position:
               
180-340
               

               
Cow position:
               
chr3:5003791-5003634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
118, 68
               

               
Conread position:
               
180-340
               

               
Cow position:
               
chr3:5737905-5737751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
157, 62
               

               
Conread position:
               
180-346
               

               
Cow position:
               
chr3:17531577-17531743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
121, 70
               

               
Conread position:
               
180-358
               

               
Cow position:
               
chr3:72745396-72745580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
180-359
               

               
Cow position:
               
chr3:70756480-70756660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
122, 71
               

               
Conread position:
               
180-360
               

               
Cow position:
               
chr3:53083824-53084007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
121, 66
               

               
Conread position:
               
180-361
               

               
Cow position:
               
chr3:12978456-12978637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
114, 71
               

               
Conread position:
               
180-370
               

               
Cow position:
               
chr3:56704151-56704350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
180-524
               

               
Cow position:
               
chr3:74079479-74079824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
121, 70
               

               
Conread position:
               
180-559
               

               
Cow position:
               
chr3:16656326-16656698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
90, 102
               

               
Conread position:
               
180-569
               

               
Cow position:
               
chr3:11987487-11987103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
122, 54
               

               
Conread position:
               
181-303
               

               
Cow position:
               
chr3:14589072-14589192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
181-320
               

               
Cow position:
               
chr3:30373988-30374127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
121, 73
               

               
Conread position:
               
181-347
               

               
Cow position:
               
chr3:83199671-83199505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
121, 73
               

               
Conread position:
               
181-359
               

               
Cow position:
               
chr3:73961536-73961715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
121, 79
               

               
Conread position:
               
181-361
               

               
Cow position:
               
chr3:11640894-11640713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
118, 73
               

               
Conread position:
               
181-541
               

               
Cow position:
               
chr3:70334534-70334902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
120, 79
               

               
Conread position:
               
183-347
               

               
Cow position:
               
chr3:70431590-70431424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
47, 79
               

               
Conread position:
               
183-357
               

               
Cow position:
               
chr3:80709708-80709883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
119, 71
               

               
Conread position:
               
183-359
               

               
Cow position:
               
chr3:18855234-18855057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
119, 70
               

               
Conread position:
               
183-557
               

               
Cow position:
               
chr3:23877155-23876783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
137, 6
               

               
Conread position:
               
184-333
               

               
Cow position:
               
chr3:49732895-49733045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
72, 117
               

               
Conread position:
               
184-360
               

               
Cow position:
               
chr3:74787581-74787411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
117, 41
               

               
Conread position:
               
184-370
               

               
Cow position:
               
chr3:60264566-60264746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
117, 45
               

               
Conread position:
               
184-559
               

               
Cow position:
               
chr3:69416623-69417005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
118, 83
               

               
Conread position:
               
189-343
               

               
Cow position:
               
chr3:18326676-18326832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
111, 70
               

               
Conread position:
               
189-548
               

               
Cow position:
               
chr3:65413124-65413483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
70, 74
               

               
Conread position:
               
189-559
               

               
Cow position:
               
chr3:25945245-25944860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
113, 27
               

               
Conread position:
               
189-559
               

               
Cow position:
               
chr3:80565115-80564743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
13, 60
               

               
Conread position:
               
190-337
               

               
Cow position:
               
chr3:17039766-17039616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
85, 69
               

               
Conread position:
               
191-343
               

               
Cow position:
               
chr3:73162248-73162390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
111, 28
               

               
Conread position:
               
191-557
               

               
Cow position:
               
chr3:74134855-74134490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
41, 29
               

               
Conread position:
               
193-292
               

               
Cow position:
               
chr3:75945714-75945813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 67
               

               
Conread position:
               
193-360
               

               
Cow position:
               
chr3:19788685-19788849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
108, 43
               

               
Conread position:
               
193-366
               

               
Cow position:
               
chr3:58432301-58432470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
110, 40
               

               
Conread position:
               
193-525
               

               
Cow position:
               
chr3:44102113-44101783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
109, 47
               

               
Conread position:
               
193-538
               

               
Cow position:
               
chr3:55010025-55010357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
108, 39
               

               
Conread position:
               
193-559
               

               
Cow position:
               
chr3:72391234-72390863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 178
               

               
Conread position:
               
194-359
               

               
Cow position:
               
chr3:38283416-38283582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 61
               

               
Conread position:
               
194-499
               

               
Cow position:
               
chr3:73820217-73820529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
55, 183
               

               
Conread position:
               
198-344
               

               
Cow position:
               
chr3:25060470-25060324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
104, 29
               

               
Conread position:
               
198-347
               

               
Cow position:
               
chr3:35582982-35582834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
100, 50
               

               
Conread position:
               
198-544
               

               
Cow position:
               
chr3:55124140-55124480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
100, 55
               

               
Conread position:
               
201-333
               

               
Cow position:
               
chr3:19435255-19435124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
97, 47
               

               
Conread position:
               
201-572
               

               
Cow position:
               
chr3:47284949-47284607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
97, 49
               

               
Conread position:
               
202-358
               

               
Cow position:
               
chr3:25037857-25038009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
100, 45
               

               
Conread position:
               
202-360
               

               
Cow position:
               
chr3:15237553-15237710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 56
               

               
Conread position:
               
202-406
               

               
Cow position:
               
chr3:38783745-38783536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
100, 36
               

               
Conread position:
               
202-409
               

               
Cow position:
               
chr3:61323471-61323248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
96, 52
               

               
Conread position:
               
202-523
               

               
Cow position:
               
chr3:15751577-15751906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
101, 27
               

               
Conread position:
               
202-546
               

               
Cow position:
               
chr3:14601566-14601921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
107, 46
               

               
Conread position:
               
202-559
               

               
Cow position:
               
chr3:6690140-6689777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
100, 49
               

               
Conread position:
               
202-559
               

               
Cow position:
               
chr3:77271141-77271484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
92, 46
               

               
Conread position:
               
203-559
               

               
Cow position:
               
chr3:31207015-31206655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
99, 56
               

               
Conread position:
               
205-559
               

               
Cow position:
               
chr3:73709181-73708831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
97, 32
               

               
Conread position:
               
211-559
               

               
Cow position:
               
chr3:28898091-28898440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 173
               

               
Conread position:
               
212-360
               

               
Cow position:
               
chr3:74900508-74900659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
11, 90
               

               
Conread position:
               
225-411
               

               
Cow position:
               
chr3:10104160-10103961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
6, 104
               

               
Conread position:
               
226-536
               

               
Cow position:
               
chr3:5366884-5366577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
73, 34
               

               
Conread position:
               
227-370
               

               
Cow position:
               
chr3:84157330-84157473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
227-558
               

               
Cow position:
               
chr3:80581774-80581455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
28, 107
               

               
Conread position:
               
229-361
               

               
Cow position:
               
chr3:22510136-22510007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
229-551
               

               
Cow position:
               
chr3:53113288-53112960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
230-361
               

               
Cow position:
               
chr3:28937492-28937625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
230-361
               

               
Cow position:
               
chr3:78201723-78201590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
13, 59
               

               
Conread position:
               
230-370
               

               
Cow position:
               
chr3:57877682-57877537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
230-518
               

               
Cow position:
               
chr3:17934825-17935113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
72, 167
               

               
Conread position:
               
230-551
               

               
Cow position:
               
chr3:59621536-59621847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
230-558
               

               
Cow position:
               
chr3:49383060-49382736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
70, 29
               

               
Conread position:
               
230-559
               

               
Cow position:
               
chr3:52863071-52863402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
44, 29
               

               
Conread position:
               
231-347
               

               
Cow position:
               
chr3:4181199-4181317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
231-359
               

               
Cow position:
               
chr3:61133749-61133621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 29
               

               
Conread position:
               
231-557
               

               
Cow position:
               
chr3:61279019-61278691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
232-385
               

               
Cow position:
               
chr3:64373042-64373200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
233-546
               

               
Cow position:
               
chr3:57760607-57760294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
66, 26
               

               
Conread position:
               
236-370
               

               
Cow position:
               
chr3:72503790-72503925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 25
               

               
Conread position:
               
236-517
               

               
Cow position:
               
chr3:81507004-81507290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
11, 24
               

               
Conread position:
               
246-558
               

               
Cow position:
               
chr3:72676188-72675871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
56, 154
               

               
Conread position:
               
246-559
               

               
Cow position:
               
chr3:26960492-26960812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
56, 14
               

               
Conread position:
               
247-361
               

               
Cow position:
               
chr3:40199200-40199315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 15
               

               
Conread position:
               
247-559
               

               
Cow position:
               
chr3:62826522-62826840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 83
               

               
Conread position:
               
249-559
               

               
Cow position:
               
chr3:45308000-45307717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
53, 10
               

               
Conread position:
               
250-559
               

               
Cow position:
               
chr3:73764107-73764413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
52, 71
               

               
Conread position:
               
254-359
               

               
Cow position:
               
chr3:68059403-68059297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
48, 22
               

               
Conread position:
               
254-523
               

               
Cow position:
               
chr3:58767352-58767084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
48, 118
               

               
Conread position:
               
255-525
               

               
Cow position:
               
chr3:28908115-28908385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
47, 138
               

               
Conread position:
               
255-558
               

               
Cow position:
               
chr3:49650476-49650163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
47, 159
               

               
Conread position:
               
257-525
               

               
Cow position:
               
chr3:34669647-34669914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
45, 105
               

               
Conread position:
               
268-549
               

               
Cow position:
               
chr3:3638253-3637975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
274-559
               

               
Cow position:
               
chr3:23444819-23445107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
28, 148
               

               
Conread position:
               
302-559
               

               
Cow position:
               
chr3:71430165-71430429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
313-537
               

               
Cow position:
               
chr3:70632049-70631819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
40, 103
               

               
Conread position:
               
437-546
               

               
Cow position:
               
chr3:73759613-73759724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
441-561
               

               
Cow position:
               
chr3:35005677-35005558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
89, 40
               

               
Conread position:
               
441-572
               

               
Cow position:
               
chr3:18607271-18607139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
445-559
               

               
Cow position:
               
chr3:29334616-29334731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
39, 86
               

               
Conread position:
               
445-559
               

               
Cow position:
               
chr3:51609716-51609599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
445-559
               

               
Cow position:
               
chr3:79208101-79208220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
446-559
               

               
Cow position:
               
chr3:83921097-83920981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               
Show alignments to all cow chromosomes.