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Cow genome map

           
Conread name:
           
Ss1.1-Pla1-C0000032_A06.5
        

               
Conread position:
               
1-103
               

               
Cow position:
               
chr5:29831269-29831371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-110
               

               
Cow position:
               
chr5:16893532-16893637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
5-111
               

               
Cow position:
               
chr5:19626820-19626712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
5-111
               

               
Cow position:
               
chr5:35190351-35190244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
5-408
               

               
Cow position:
               
chr5:57526526-57526951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
6-131
               

               
Cow position:
               
chr5:74050068-74049940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
9-98
               

               
Cow position:
               
chr5:30233150-30233061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
90
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
9-131
               

               
Cow position:
               
chr5:56028303-56028425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 104
               

               
Conread position:
               
10-103
               

               
Cow position:
               
chr5:25495112-25495204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
16-360
               

               
Cow position:
               
chr5:47744008-47743659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 166
               

               
Conread position:
               
73-355
               

               
Cow position:
               
chr5:51800289-51800575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
86-358
               

               
Cow position:
               
chr5:17826491-17826218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 168
               

               
Conread position:
               
99-377
               

               
Cow position:
               
chr5:54127580-54127302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
103-409
               

               
Cow position:
               
chr5:51554798-51555105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
199, 151
               

               
Conread position:
               
109-356
               

               
Cow position:
               
chr5:54751091-54750842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 47
               

               
Conread position:
               
117-370
               

               
Cow position:
               
chr5:65760260-65760510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
46, 22
               

               
Conread position:
               
118-284
               

               
Cow position:
               
chr5:42551838-42551676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
121-294
               

               
Cow position:
               
chr5:43434734-43434905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
32, 11
               

               
Conread position:
               
123-345
               

               
Cow position:
               
chr5:45854770-45854537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
124-319
               

               
Cow position:
               
chr5:57231895-57231706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
178, 11
               

               
Conread position:
               
126-333
               

               
Cow position:
               
chr5:35235425-35235631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
172, 11
               

               
Conread position:
               
128-347
               

               
Cow position:
               
chr5:37919230-37919441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
174, 23
               

               
Conread position:
               
129-314
               

               
Cow position:
               
chr5:31975795-31975596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
35, 155
               

               
Conread position:
               
129-354
               

               
Cow position:
               
chr5:19298412-19298642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
35, 25
               

               
Conread position:
               
129-359
               

               
Cow position:
               
chr5:41431401-41431640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
23, 141
               

               
Conread position:
               
130-346
               

               
Cow position:
               
chr5:1766037-1766254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
16, 38
               

               
Conread position:
               
130-347
               

               
Cow position:
               
chr5:56549625-56549410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
172, 28
               

               
Conread position:
               
131-359
               

               
Cow position:
               
chr5:65883366-65883594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
171, 44
               

               
Conread position:
               
132-559
               

               
Cow position:
               
chr5:34505664-34506094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
30, 124
               

               
Conread position:
               
133-356
               

               
Cow position:
               
chr5:41755733-41755950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
167, 74
               

               
Conread position:
               
133-525
               

               
Cow position:
               
chr5:44847773-44848160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
168, 21
               

               
Conread position:
               
134-343
               

               
Cow position:
               
chr5:55041466-55041257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
168, 7
               

               
Conread position:
               
134-343
               

               
Cow position:
               
chr5:57556287-57556077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
19, 63
               

               
Conread position:
               
134-359
               

               
Cow position:
               
chr5:36746824-36747050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 123
               

               
Conread position:
               
134-363
               

               
Cow position:
               
chr5:24464993-24464773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
204, 24
               

               
Conread position:
               
134-377
               

               
Cow position:
               
chr5:34288000-34288236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
167, 35
               

               
Conread position:
               
135-246
               

               
Cow position:
               
chr5:52268045-52268156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
135-309
               

               
Cow position:
               
chr5:29136220-29136395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 121
               

               
Conread position:
               
135-318
               

               
Cow position:
               
chr5:12566288-12566470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
167, 92
               

               
Conread position:
               
135-320
               

               
Cow position:
               
chr5:58237198-58237379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
8, 53
               

               
Conread position:
               
135-359
               

               
Cow position:
               
chr5:64555786-64555561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
167, 119
               

               
Conread position:
               
135-546
               

               
Cow position:
               
chr5:44673959-44673528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
149, 32
               

               
Conread position:
               
135-551
               

               
Cow position:
               
chr5:42845336-42845761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
35, 72
               

               
Conread position:
               
136-326
               

               
Cow position:
               
chr5:20437116-20436925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
166, 118
               

               
Conread position:
               
136-360
               

               
Cow position:
               
chr5:64060696-64060477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
166, 15
               

               
Conread position:
               
136-374
               

               
Cow position:
               
chr5:52853219-52852991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
166, 22
               

               
Conread position:
               
136-387
               

               
Cow position:
               
chr5:48154208-48154464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
21, 118
               

               
Conread position:
               
137-235
               

               
Cow position:
               
chr5:35513517-35513422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
137-254
               

               
Cow position:
               
chr5:55168794-55168678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
137-280
               

               
Cow position:
               
chr5:13471361-13471221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
137-300
               

               
Cow position:
               
chr5:25447138-25446978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
137-311
               

               
Cow position:
               
chr5:43815564-43815737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
161, 7
               

               
Conread position:
               
137-348
               

               
Cow position:
               
chr5:57303026-57302808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 8
               

               
Conread position:
               
137-359
               

               
Cow position:
               
chr5:57265646-57265872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
38, 120
               

               
Conread position:
               
137-359
               

               
Cow position:
               
chr5:58756150-58756374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
20, 124
               

               
Conread position:
               
137-361
               

               
Cow position:
               
chr5:71845671-71845885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
137-551
               

               
Cow position:
               
chr5:39937367-39936942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 21
               

               
Conread position:
               
138-270
               

               
Cow position:
               
chr5:41757865-41757734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
138-345
               

               
Cow position:
               
chr5:56071901-56072109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
86, 30
               

               
Conread position:
               
138-346
               

               
Cow position:
               
chr5:9893871-9894078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
31, 71
               

               
Conread position:
               
138-347
               

               
Cow position:
               
chr5:30796719-30796929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
19, 117
               

               
Conread position:
               
139-270
               

               
Cow position:
               
chr5:42928361-42928491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
109, 19
               

               
Conread position:
               
139-300
               

               
Cow position:
               
chr5:6176401-6176569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
7, 123
               

               
Conread position:
               
139-300
               

               
Cow position:
               
chr5:52125142-52125302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
24, 64
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr5:59395912-59395709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
163, 19
               

               
Conread position:
               
139-346
               

               
Cow position:
               
chr5:48061857-48062072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
43, 139
               

               
Conread position:
               
139-347
               

               
Cow position:
               
chr5:5666570-5666778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
22, 58
               

               
Conread position:
               
139-363
               

               
Cow position:
               
chr5:19972751-19972975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
163, 115
               

               
Conread position:
               
139-388
               

               
Cow position:
               
chr5:2423037-2423284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
9, 80
               

               
Conread position:
               
139-522
               

               
Cow position:
               
chr5:53055310-53055694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
163, 14
               

               
Conread position:
               
140-330
               

               
Cow position:
               
chr5:59662809-59662997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
162, 29
               

               
Conread position:
               
140-345
               

               
Cow position:
               
chr5:31527143-31527349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
162, 56
               

               
Conread position:
               
140-352
               

               
Cow position:
               
chr5:63187625-63187838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
18, 121
               

               
Conread position:
               
140-357
               

               
Cow position:
               
chr5:60908603-60908383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
7, 117
               

               
Conread position:
               
140-359
               

               
Cow position:
               
chr5:12300163-12299943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
23, 79
               

               
Conread position:
               
140-359
               

               
Cow position:
               
chr5:38820411-38820628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
162, 10
               

               
Conread position:
               
140-361
               

               
Cow position:
               
chr5:47220741-47220518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
137, 27
               

               
Conread position:
               
140-388
               

               
Cow position:
               
chr5:69383500-69383257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
161, 22
               

               
Conread position:
               
140-552
               

               
Cow position:
               
chr5:35246858-35247272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 14
               

               
Conread position:
               
141-253
               

               
Cow position:
               
chr5:29371954-29371843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
141-269
               

               
Cow position:
               
chr5:27011432-27011303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 115
               

               
Conread position:
               
141-334
               

               
Cow position:
               
chr5:52052215-52052410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
16, 113
               

               
Conread position:
               
141-347
               

               
Cow position:
               
chr5:1005617-1005824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
161, 113
               

               
Conread position:
               
141-358
               

               
Cow position:
               
chr5:36370521-36370312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
161, 12
               

               
Conread position:
               
141-358
               

               
Cow position:
               
chr5:54875443-54875666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
141-370
               

               
Cow position:
               
chr5:56613315-56613543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
124, 27
               

               
Conread position:
               
141-545
               

               
Cow position:
               
chr5:66972682-66972269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 73
               

               
Conread position:
               
142-257
               

               
Cow position:
               
chr5:28719327-28719215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
142-285
               

               
Cow position:
               
chr5:14735992-14735848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 120
               

               
Conread position:
               
142-295
               

               
Cow position:
               
chr5:22888910-22889052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
142-305
               

               
Cow position:
               
chr5:44868603-44868444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
160, 92
               

               
Conread position:
               
142-354
               

               
Cow position:
               
chr5:13944347-13944559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
96, 12
               

               
Conread position:
               
142-359
               

               
Cow position:
               
chr5:43332475-43332687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
160, 112
               

               
Conread position:
               
142-554
               

               
Cow position:
               
chr5:26262440-26262839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
83, 11
               

               
Conread position:
               
142-559
               

               
Cow position:
               
chr5:31469342-31469753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
15, 113
               

               
Conread position:
               
142-559
               

               
Cow position:
               
chr5:52040070-52040488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
20, 11
               

               
Conread position:
               
143-253
               

               
Cow position:
               
chr5:44666414-44666304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
14, 42
               

               
Conread position:
               
143-297
               

               
Cow position:
               
chr5:57641126-57640978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
143-309
               

               
Cow position:
               
chr5:64162521-64162696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
109, 15
               

               
Conread position:
               
143-340
               

               
Cow position:
               
chr5:52029651-52029458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
143-345
               

               
Cow position:
               
chr5:19972563-19972761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
159, 15
               

               
Conread position:
               
143-345
               

               
Cow position:
               
chr5:43465773-43465571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
160, 24
               

               
Conread position:
               
143-346
               

               
Cow position:
               
chr5:56535782-56535581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
159, 9
               

               
Conread position:
               
143-347
               

               
Cow position:
               
chr5:57803106-57802896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 116
               

               
Conread position:
               
143-347
               

               
Cow position:
               
chr5:71723325-71723119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
151, 111
               

               
Conread position:
               
143-359
               

               
Cow position:
               
chr5:27179912-27179689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
143-359
               

               
Cow position:
               
chr5:37265791-37266010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
20, 113
               

               
Conread position:
               
143-359
               

               
Cow position:
               
chr5:40122362-40122578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
143-359
               

               
Cow position:
               
chr5:46063740-46063529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
157, 32
               

               
Conread position:
               
143-359
               

               
Cow position:
               
chr5:60212834-60212616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
159, 124
               

               
Conread position:
               
143-389
               

               
Cow position:
               
chr5:6443896-6444151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 8
               

               
Conread position:
               
143-406
               

               
Cow position:
               
chr5:37941562-37941824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
159, 26
               

               
Conread position:
               
143-557
               

               
Cow position:
               
chr5:35208509-35208095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 15
               

               
Conread position:
               
143-558
               

               
Cow position:
               
chr5:23140341-23140740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
159, 68
               

               
Conread position:
               
143-559
               

               
Cow position:
               
chr5:11426989-11427410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 52
               

               
Conread position:
               
143-559
               

               
Cow position:
               
chr5:17999249-17999663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 84
               

               
Conread position:
               
143-559
               

               
Cow position:
               
chr5:57074092-57074503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
158, 26
               

               
Conread position:
               
144-253
               

               
Cow position:
               
chr5:39117550-39117439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
144-260
               

               
Cow position:
               
chr5:18084220-18084333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
144-297
               

               
Cow position:
               
chr5:22210829-22210976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
12, 85
               

               
Conread position:
               
144-300
               

               
Cow position:
               
chr5:40153342-40153498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
13, 117
               

               
Conread position:
               
144-311
               

               
Cow position:
               
chr5:55943475-55943636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
158, 14
               

               
Conread position:
               
144-325
               

               
Cow position:
               
chr5:29599307-29599481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
157, 14
               

               
Conread position:
               
144-345
               

               
Cow position:
               
chr5:26167667-26167467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 105
               

               
Conread position:
               
144-359
               

               
Cow position:
               
chr5:70505794-70505571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
144-360
               

               
Cow position:
               
chr5:54331135-54330912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 118
               

               
Conread position:
               
144-361
               

               
Cow position:
               
chr5:16185629-16185408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 113
               

               
Conread position:
               
144-388
               

               
Cow position:
               
chr5:19797232-19796977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 120
               

               
Conread position:
               
144-390
               

               
Cow position:
               
chr5:2827622-2827375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
7, 52
               

               
Conread position:
               
144-390
               

               
Cow position:
               
chr5:19752545-19752308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
151, 12
               

               
Conread position:
               
144-522
               

               
Cow position:
               
chr5:44796488-44796863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
25, 78
               

               
Conread position:
               
144-559
               

               
Cow position:
               
chr5:5938577-5938156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
13, 117
               

               
Conread position:
               
144-559
               

               
Cow position:
               
chr5:12873998-12873575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
32, 10
               

               
Conread position:
               
144-559
               

               
Cow position:
               
chr5:24349361-24348943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
111, 255
               

               
Conread position:
               
145-273
               

               
Cow position:
               
chr5:56578945-56578819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
145-284
               

               
Cow position:
               
chr5:57561870-57561736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
145-296
               

               
Cow position:
               
chr5:4728312-4728171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
145-297
               

               
Cow position:
               
chr5:34193379-34193235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
145-297
               

               
Cow position:
               
chr5:75711893-75712042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
107, 17
               

               
Conread position:
               
145-310
               

               
Cow position:
               
chr5:1178199-1178035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
145-314
               

               
Cow position:
               
chr5:56624269-56624440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
145-315
               

               
Cow position:
               
chr5:27402694-27402864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
145-320
               

               
Cow position:
               
chr5:56643315-56643138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
22, 92
               

               
Conread position:
               
145-322
               

               
Cow position:
               
chr5:42321004-42321181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
157, 9
               

               
Conread position:
               
145-330
               

               
Cow position:
               
chr5:28768337-28768519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
157, 9
               

               
Conread position:
               
145-343
               

               
Cow position:
               
chr5:55162873-55162674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
157, 109
               

               
Conread position:
               
145-344
               

               
Cow position:
               
chr5:23528268-23528467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
157, 13
               

               
Conread position:
               
145-346
               

               
Cow position:
               
chr5:8146114-8146320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
47, 113
               

               
Conread position:
               
145-347
               

               
Cow position:
               
chr5:6876721-6876924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
169, 22
               

               
Conread position:
               
145-347
               

               
Cow position:
               
chr5:28881435-28881648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
145-355
               

               
Cow position:
               
chr5:44312170-44312380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
157, 9
               

               
Conread position:
               
145-356
               

               
Cow position:
               
chr5:49821676-49821463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
145-359
               

               
Cow position:
               
chr5:29468036-29468248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
157, 9
               

               
Conread position:
               
145-361
               

               
Cow position:
               
chr5:62341276-62341058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
8, 54
               

               
Conread position:
               
145-362
               

               
Cow position:
               
chr5:30406459-30406236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 110
               

               
Conread position:
               
145-370
               

               
Cow position:
               
chr5:5016667-5016449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
145-370
               

               
Cow position:
               
chr5:52728767-52728999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
145-389
               

               
Cow position:
               
chr5:26548899-26549139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
153, 22
               

               
Conread position:
               
145-390
               

               
Cow position:
               
chr5:20843153-20843394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
78, 71
               

               
Conread position:
               
145-408
               

               
Cow position:
               
chr5:55965650-55965918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 17
               

               
Conread position:
               
145-477
               

               
Cow position:
               
chr5:41885159-41884848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 91
               

               
Conread position:
               
145-559
               

               
Cow position:
               
chr5:30178258-30178679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
157, 13
               

               
Conread position:
               
145-559
               

               
Cow position:
               
chr5:57591930-57591522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
12, 78
               

               
Conread position:
               
146-284
               

               
Cow position:
               
chr5:32672589-32672726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
146-296
               

               
Cow position:
               
chr5:37798779-37798626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
89, 7
               

               
Conread position:
               
146-347
               

               
Cow position:
               
chr5:1693848-1694044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
155, 90
               

               
Conread position:
               
146-389
               

               
Cow position:
               
chr5:11562485-11562722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
156, 21
               

               
Conread position:
               
146-559
               

               
Cow position:
               
chr5:7044464-7044879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
152, 23
               

               
Conread position:
               
146-572
               

               
Cow position:
               
chr5:3772089-3771665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 88
               

               
Conread position:
               
148-368
               

               
Cow position:
               
chr5:57497185-57497401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
153, 6
               

               
Conread position:
               
148-528
               

               
Cow position:
               
chr5:53842535-53842144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
9, 77
               

               
Conread position:
               
149-347
               

               
Cow position:
               
chr5:56477445-56477249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
149-391
               

               
Cow position:
               
chr5:43604379-43604141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
149-559
               

               
Cow position:
               
chr5:53835962-53835546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
86, 389
               

               
Conread position:
               
150-281
               

               
Cow position:
               
chr5:1122340-1122210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
150-347
               

               
Cow position:
               
chr5:53779392-53779197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
152, 25
               

               
Conread position:
               
150-348
               

               
Cow position:
               
chr5:40531292-40531495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 188
               

               
Conread position:
               
150-536
               

               
Cow position:
               
chr5:42064446-42064052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
151-250
               

               
Cow position:
               
chr5:54375055-54374956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
151-270
               

               
Cow position:
               
chr5:8149070-8149184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
151-283
               

               
Cow position:
               
chr5:45337181-45337311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
151-284
               

               
Cow position:
               
chr5:56428333-56428465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
151-290
               

               
Cow position:
               
chr5:44438473-44438610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
151-300
               

               
Cow position:
               
chr5:29901364-29901212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 116
               

               
Conread position:
               
151-316
               

               
Cow position:
               
chr5:61593502-61593342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
151, 25
               

               
Conread position:
               
151-320
               

               
Cow position:
               
chr5:24108818-24108989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
10, 104
               

               
Conread position:
               
151-327
               

               
Cow position:
               
chr5:26149274-26149098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
151, 74
               

               
Conread position:
               
151-330
               

               
Cow position:
               
chr5:40637539-40637362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
151-339
               

               
Cow position:
               
chr5:34918582-34918398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
150, 91
               

               
Conread position:
               
151-342
               

               
Cow position:
               
chr5:1678829-1678637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
151, 111
               

               
Conread position:
               
151-342
               

               
Cow position:
               
chr5:50421734-50421928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
89, 105
               

               
Conread position:
               
151-345
               

               
Cow position:
               
chr5:40152726-40152531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
151, 109
               

               
Conread position:
               
151-345
               

               
Cow position:
               
chr5:41226765-41226960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
151, 102
               

               
Conread position:
               
151-346
               

               
Cow position:
               
chr5:41302837-41303033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-347
               

               
Cow position:
               
chr5:2240752-2240947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
147, 18
               

               
Conread position:
               
151-347
               

               
Cow position:
               
chr5:3817449-3817643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
109, 16
               

               
Conread position:
               
151-347
               

               
Cow position:
               
chr5:51012239-51012043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
137, 103
               

               
Conread position:
               
151-350
               

               
Cow position:
               
chr5:62822910-62822711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
148, 103
               

               
Conread position:
               
151-356
               

               
Cow position:
               
chr5:64024644-64024431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 110
               

               
Conread position:
               
151-357
               

               
Cow position:
               
chr5:55071845-55072052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-358
               

               
Cow position:
               
chr5:37933953-37933747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
151, 24
               

               
Conread position:
               
151-358
               

               
Cow position:
               
chr5:69333741-69333532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
6, 104
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr5:7177391-7177183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
147, 90
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr5:9024068-9024281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
37, 106
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr5:33696586-33696375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
84, 106
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr5:52001385-52001591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 45
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr5:52136813-52137022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr5:56200928-56201139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr5:58737517-58737726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
151, 109
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr5:61049572-61049364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 15
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr5:64116341-64116136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
151, 44
               

               
Conread position:
               
151-359
               

               
Cow position:
               
chr5:73424438-73424649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
151-360
               

               
Cow position:
               
chr5:71579696-71579492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
90, 48
               

               
Conread position:
               
151-361
               

               
Cow position:
               
chr5:13957266-13957054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
151-361
               

               
Cow position:
               
chr5:50101139-50101346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
151, 80
               

               
Conread position:
               
151-370
               

               
Cow position:
               
chr5:5760070-5760293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
87, 152
               

               
Conread position:
               
151-370
               

               
Cow position:
               
chr5:6127070-6126859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
212, 103
               

               
Conread position:
               
151-370
               

               
Cow position:
               
chr5:63114229-63114450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-395
               

               
Cow position:
               
chr5:17566204-17566442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
101, 40
               

               
Conread position:
               
151-406
               

               
Cow position:
               
chr5:61999317-61999578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
151-407
               

               
Cow position:
               
chr5:33273937-33273680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
25, 181
               

               
Conread position:
               
151-496
               

               
Cow position:
               
chr5:43370954-43371306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
151, 109
               

               
Conread position:
               
151-522
               

               
Cow position:
               
chr5:18289357-18288995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 88
               

               
Conread position:
               
151-557
               

               
Cow position:
               
chr5:12149790-12149379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
41, 107
               

               
Conread position:
               
151-558
               

               
Cow position:
               
chr5:24995982-24996393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
109, 67
               

               
Conread position:
               
151-559
               

               
Cow position:
               
chr5:36868976-36868577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 108
               

               
Conread position:
               
151-559
               

               
Cow position:
               
chr5:45225585-45225993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 35
               

               
Conread position:
               
152-551
               

               
Cow position:
               
chr5:30303118-30302735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
168, 15
               

               
Conread position:
               
152-559
               

               
Cow position:
               
chr5:28224679-28224284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
150, 16
               

               
Conread position:
               
153-343
               

               
Cow position:
               
chr5:49668720-49668532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
149, 48
               

               
Conread position:
               
153-360
               

               
Cow position:
               
chr5:56944266-56944055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
153-376
               

               
Cow position:
               
chr5:71015649-71015869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
146, 14
               

               
Conread position:
               
153-426
               

               
Cow position:
               
chr5:26132858-26133138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
148, 101
               

               
Conread position:
               
153-558
               

               
Cow position:
               
chr5:17086783-17087196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
154-257
               

               
Cow position:
               
chr5:17644111-17644215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
154-330
               

               
Cow position:
               
chr5:48819511-48819334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
78, 37
               

               
Conread position:
               
154-354
               

               
Cow position:
               
chr5:27084533-27084334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
149, 15
               

               
Conread position:
               
154-359
               

               
Cow position:
               
chr5:12820489-12820281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
148, 100
               

               
Conread position:
               
154-359
               

               
Cow position:
               
chr5:37679409-37679204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
148, 100
               

               
Conread position:
               
154-361
               

               
Cow position:
               
chr5:15364507-15364299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
148, 164
               

               
Conread position:
               
154-361
               

               
Cow position:
               
chr5:26497452-26497647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
147, 55
               

               
Conread position:
               
154-370
               

               
Cow position:
               
chr5:55942140-55942359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
23, 101
               

               
Conread position:
               
154-538
               

               
Cow position:
               
chr5:29060701-29061081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
14, 85
               

               
Conread position:
               
154-554
               

               
Cow position:
               
chr5:58694-59092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 101
               

               
Conread position:
               
154-572
               

               
Cow position:
               
chr5:50942924-50943335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
32, 87
               

               
Conread position:
               
155-274
               

               
Cow position:
               
chr5:61029291-61029173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
155-297
               

               
Cow position:
               
chr5:4824388-4824247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
155-314
               

               
Cow position:
               
chr5:15077399-15077557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
143, 85
               

               
Conread position:
               
155-318
               

               
Cow position:
               
chr5:59958406-59958247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
13, 103
               

               
Conread position:
               
155-345
               

               
Cow position:
               
chr5:22186641-22186464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
146, 58
               

               
Conread position:
               
155-345
               

               
Cow position:
               
chr5:26467863-26467672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 37
               

               
Conread position:
               
155-361
               

               
Cow position:
               
chr5:13270780-13270987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
147, 179
               

               
Conread position:
               
155-519
               

               
Cow position:
               
chr5:64140773-64140399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
147, 95
               

               
Conread position:
               
155-558
               

               
Cow position:
               
chr5:11667950-11668346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 12
               

               
Conread position:
               
156-281
               

               
Cow position:
               
chr5:32086791-32086914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
156-317
               

               
Cow position:
               
chr5:34639358-34639196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
140, 88
               

               
Conread position:
               
156-333
               

               
Cow position:
               
chr5:38079608-38079428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 40
               

               
Conread position:
               
156-345
               

               
Cow position:
               
chr5:69538775-69538586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
146, 11
               

               
Conread position:
               
156-346
               

               
Cow position:
               
chr5:69099953-69099765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
139, 80
               

               
Conread position:
               
156-357
               

               
Cow position:
               
chr5:44196695-44196895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
22, 99
               

               
Conread position:
               
156-361
               

               
Cow position:
               
chr5:30562161-30561962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
6, 16
               

               
Conread position:
               
156-390
               

               
Cow position:
               
chr5:46129435-46129668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
83, 10
               

               
Conread position:
               
157-347
               

               
Cow position:
               
chr5:46540827-46541009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
144, 81
               

               
Conread position:
               
157-370
               

               
Cow position:
               
chr5:18295670-18295460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
145, 39
               

               
Conread position:
               
157-370
               

               
Cow position:
               
chr5:72045442-72045653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
158-256
               

               
Cow position:
               
chr5:54427266-54427364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
158-263
               

               
Cow position:
               
chr5:40171546-40171441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
158-278
               

               
Cow position:
               
chr5:17253996-17254109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
158-282
               

               
Cow position:
               
chr5:21374883-21375003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
19, 74
               

               
Conread position:
               
158-283
               

               
Cow position:
               
chr5:20407242-20407365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
158-284
               

               
Cow position:
               
chr5:20113058-20113183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
158-286
               

               
Cow position:
               
chr5:37572325-37572451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
158-296
               

               
Cow position:
               
chr5:25462314-25462185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
158-296
               

               
Cow position:
               
chr5:43408108-43408243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
158-297
               

               
Cow position:
               
chr5:11303334-11303200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
158-302
               

               
Cow position:
               
chr5:40740095-40740238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
158-306
               

               
Cow position:
               
chr5:56301383-56301531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-308
               

               
Cow position:
               
chr5:18579121-18578975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
115, 82
               

               
Conread position:
               
158-315
               

               
Cow position:
               
chr5:71387431-71387283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
143, 77
               

               
Conread position:
               
158-318
               

               
Cow position:
               
chr5:25450177-25450027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
6, 81
               

               
Conread position:
               
158-320
               

               
Cow position:
               
chr5:33032400-33032236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
158-320
               

               
Cow position:
               
chr5:53824881-53825043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
144, 93
               

               
Conread position:
               
158-320
               

               
Cow position:
               
chr5:56284539-56284374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 94
               

               
Conread position:
               
158-321
               

               
Cow position:
               
chr5:64061244-64061089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
140, 10
               

               
Conread position:
               
158-322
               

               
Cow position:
               
chr5:27099586-27099419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
57, 10
               

               
Conread position:
               
158-325
               

               
Cow position:
               
chr5:15770220-15770390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
158-325
               

               
Cow position:
               
chr5:22957634-22957475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
117, 9
               

               
Conread position:
               
158-326
               

               
Cow position:
               
chr5:43611930-43611763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
144, 10
               

               
Conread position:
               
158-326
               

               
Cow position:
               
chr5:55749804-55749972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-327
               

               
Cow position:
               
chr5:32975995-32975822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
158-327
               

               
Cow position:
               
chr5:37919629-37919799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-334
               

               
Cow position:
               
chr5:17683212-17683386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-339
               

               
Cow position:
               
chr5:37253654-37253481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
143, 9
               

               
Conread position:
               
158-339
               

               
Cow position:
               
chr5:58401797-58401621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
143, 88
               

               
Conread position:
               
158-341
               

               
Cow position:
               
chr5:19052559-19052742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
144, 74
               

               
Conread position:
               
158-341
               

               
Cow position:
               
chr5:68461442-68461623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
144, 37
               

               
Conread position:
               
158-342
               

               
Cow position:
               
chr5:42674393-42674220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
180, 40
               

               
Conread position:
               
158-343
               

               
Cow position:
               
chr5:46681486-46681671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
147, 95
               

               
Conread position:
               
158-343
               

               
Cow position:
               
chr5:61201993-61201807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-345
               

               
Cow position:
               
chr5:5808328-5808142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
144, 9
               

               
Conread position:
               
158-345
               

               
Cow position:
               
chr5:8736045-8736233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
143, 161
               

               
Conread position:
               
158-345
               

               
Cow position:
               
chr5:29829656-29829843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
147, 17
               

               
Conread position:
               
158-345
               

               
Cow position:
               
chr5:38770381-38770568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-345
               

               
Cow position:
               
chr5:57372036-57371848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-346
               

               
Cow position:
               
chr5:19294286-19294481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 119
               

               
Conread position:
               
158-346
               

               
Cow position:
               
chr5:28660463-28660275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
143, 90
               

               
Conread position:
               
158-346
               

               
Cow position:
               
chr5:72162977-72163171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr5:12557056-12557239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
143, 10
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr5:22102785-22102602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
144, 38
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr5:24915293-24915483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
144, 93
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr5:25035022-25035211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
75, 98
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr5:43839765-43839955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr5:44189347-44189157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr5:51831677-51831867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
144, 113
               

               
Conread position:
               
158-348
               

               
Cow position:
               
chr5:45405278-45405087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
30, 9
               

               
Conread position:
               
158-348
               

               
Cow position:
               
chr5:63068489-63068680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
141, 96
               

               
Conread position:
               
158-354
               

               
Cow position:
               
chr5:20387387-20387177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
123, 96
               

               
Conread position:
               
158-355
               

               
Cow position:
               
chr5:50762474-50762268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
158-355
               

               
Cow position:
               
chr5:74658897-74658700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-358
               

               
Cow position:
               
chr5:17834926-17835125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
158-358
               

               
Cow position:
               
chr5:37255101-37255302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr5:269866-270068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr5:1104643-1104847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
27, 98
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr5:4226587-4226379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
67, 103
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr5:14293410-14293613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
5, 97
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr5:16939177-16939377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
144, 25
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr5:18513474-18513674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
144, 42
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr5:23209191-23208989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
144, 95
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr5:30419206-30419007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
144, 37
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr5:38683736-38683535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
144, 17
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr5:56494064-56494271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr5:59372705-59372505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 97
               

               
Conread position:
               
158-360
               

               
Cow position:
               
chr5:28681284-28681486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
144, 109
               

               
Conread position:
               
158-360
               

               
Cow position:
               
chr5:30233142-30232939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
109, 96
               

               
Conread position:
               
158-360
               

               
Cow position:
               
chr5:39036014-39035811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
97, 114
               

               
Conread position:
               
158-360
               

               
Cow position:
               
chr5:62011914-62011714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
144, 37
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr5:29681325-29681128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr5:32394834-32394629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
89, 69
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr5:33834272-33834072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr5:50578932-50579136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
113, 92
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr5:57062296-57062499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
54, 97
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr5:60514793-60514998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
158-363
               

               
Cow position:
               
chr5:58216186-58215985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
106, 45
               

               
Conread position:
               
158-365
               

               
Cow position:
               
chr5:62996191-62995983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-367
               

               
Cow position:
               
chr5:35319328-35319539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
142, 96
               

               
Conread position:
               
158-368
               

               
Cow position:
               
chr5:44799042-44798827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 100
               

               
Conread position:
               
158-370
               

               
Cow position:
               
chr5:50872044-50871834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
158-370
               

               
Cow position:
               
chr5:52108026-52108247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
72, 140
               

               
Conread position:
               
158-370
               

               
Cow position:
               
chr5:57101294-57101501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
143, 84
               

               
Conread position:
               
158-370
               

               
Cow position:
               
chr5:59626740-59626950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
96, 78
               

               
Conread position:
               
158-370
               

               
Cow position:
               
chr5:63241211-63240997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
147, 96
               

               
Conread position:
               
158-370
               

               
Cow position:
               
chr5:64798649-64798857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
144, 69
               

               
Conread position:
               
158-374
               

               
Cow position:
               
chr5:36624483-36624269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-380
               

               
Cow position:
               
chr5:33482944-33482732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
143, 22
               

               
Conread position:
               
158-387
               

               
Cow position:
               
chr5:20394569-20394337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
72, 98
               

               
Conread position:
               
158-388
               

               
Cow position:
               
chr5:57393071-57393302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-389
               

               
Cow position:
               
chr5:22565851-22565620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
144, 54
               

               
Conread position:
               
158-389
               

               
Cow position:
               
chr5:70678413-70678642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
140, 93
               

               
Conread position:
               
158-390
               

               
Cow position:
               
chr5:52138170-52137936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
144, 60
               

               
Conread position:
               
158-391
               

               
Cow position:
               
chr5:37895231-37894992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
15, 100
               

               
Conread position:
               
158-391
               

               
Cow position:
               
chr5:40097829-40097596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-408
               

               
Cow position:
               
chr5:61914803-61914537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
158-409
               

               
Cow position:
               
chr5:29895402-29895160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
136, 10
               

               
Conread position:
               
158-491
               

               
Cow position:
               
chr5:36038772-36039107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 55
               

               
Conread position:
               
158-518
               

               
Cow position:
               
chr5:52127004-52126645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
118, 55
               

               
Conread position:
               
158-522
               

               
Cow position:
               
chr5:44446643-44447002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
143, 76
               

               
Conread position:
               
158-525
               

               
Cow position:
               
chr5:29097594-29097222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
144, 71
               

               
Conread position:
               
158-525
               

               
Cow position:
               
chr5:53855951-53855557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
81, 38
               

               
Conread position:
               
158-535
               

               
Cow position:
               
chr5:49920157-49919782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
144, 19
               

               
Conread position:
               
158-541
               

               
Cow position:
               
chr5:35459064-35459445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 76
               

               
Conread position:
               
158-544
               

               
Cow position:
               
chr5:16937802-16938162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
325, 82
               

               
Conread position:
               
158-546
               

               
Cow position:
               
chr5:21525392-21525009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
130, 31
               

               
Conread position:
               
158-546
               

               
Cow position:
               
chr5:43858187-43858587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 10
               

               
Conread position:
               
158-546
               

               
Cow position:
               
chr5:61576779-61576384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
158-547
               

               
Cow position:
               
chr5:21617686-21617299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
131, 10
               

               
Conread position:
               
158-555
               

               
Cow position:
               
chr5:3282069-3281667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
158-557
               

               
Cow position:
               
chr5:45845460-45845862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
130, 21
               

               
Conread position:
               
158-558
               

               
Cow position:
               
chr5:65941019-65941421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 10
               

               
Conread position:
               
158-558
               

               
Cow position:
               
chr5:71158050-71158431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
144, 9
               

               
Conread position:
               
158-558
               

               
Cow position:
               
chr5:72903008-72903395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
144, 78
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr5:2309324-2309732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 82
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr5:4280677-4280295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 79
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr5:5257056-5257465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 10
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr5:12322579-12322969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
117, 73
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr5:20128286-20127885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 95
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr5:32153079-32153484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
77, 102
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr5:35969772-35969374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 198
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr5:45409557-45409158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
144, 95
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr5:50723279-50722878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 9
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr5:52668271-52667859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
147, 102
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr5:59081960-59082364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
158-559
               

               
Cow position:
               
chr5:59631719-59631313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
118, 95
               

               
Conread position:
               
158-561
               

               
Cow position:
               
chr5:56071088-56070682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
136, 9
               

               
Conread position:
               
159-286
               

               
Cow position:
               
chr5:13874006-13874134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
77, 97
               

               
Conread position:
               
159-286
               

               
Cow position:
               
chr5:72867283-72867157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
159-295
               

               
Cow position:
               
chr5:14000871-14000743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 33
               

               
Conread position:
               
159-314
               

               
Cow position:
               
chr5:6962149-6961993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
159-314
               

               
Cow position:
               
chr5:58487604-58487452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
143, 87
               

               
Conread position:
               
159-315
               

               
Cow position:
               
chr5:12724160-12724315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
159-320
               

               
Cow position:
               
chr5:72895917-72895757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
142, 94
               

               
Conread position:
               
159-326
               

               
Cow position:
               
chr5:6245434-6245598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
142, 77
               

               
Conread position:
               
159-336
               

               
Cow position:
               
chr5:49207100-49207272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
142, 10
               

               
Conread position:
               
159-337
               

               
Cow position:
               
chr5:41530704-41530886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
17, 104
               

               
Conread position:
               
159-339
               

               
Cow position:
               
chr5:67950554-67950734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
144, 88
               

               
Conread position:
               
159-345
               

               
Cow position:
               
chr5:17371464-17371652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
84, 102
               

               
Conread position:
               
159-345
               

               
Cow position:
               
chr5:37090406-37090593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
143, 112
               

               
Conread position:
               
159-345
               

               
Cow position:
               
chr5:41736412-41736228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
143, 9
               

               
Conread position:
               
159-345
               

               
Cow position:
               
chr5:54404630-54404808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
143, 50
               

               
Conread position:
               
159-345
               

               
Cow position:
               
chr5:54980469-54980284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
159-346
               

               
Cow position:
               
chr5:54340997-54340810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
143, 29
               

               
Conread position:
               
159-347
               

               
Cow position:
               
chr5:2355749-2355564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
143, 42
               

               
Conread position:
               
159-347
               

               
Cow position:
               
chr5:31648646-31648464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
143, 75
               

               
Conread position:
               
159-347
               

               
Cow position:
               
chr5:35989993-35989807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
143, 83
               

               
Conread position:
               
159-347
               

               
Cow position:
               
chr5:60761511-60761701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
159-348
               

               
Cow position:
               
chr5:60117659-60117471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
137, 25
               

               
Conread position:
               
159-348
               

               
Cow position:
               
chr5:62107253-62107443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
142, 101
               

               
Conread position:
               
159-353
               

               
Cow position:
               
chr5:30221546-30221740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
143, 100
               

               
Conread position:
               
159-356
               

               
Cow position:
               
chr5:57755802-57755997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
10, 67
               

               
Conread position:
               
159-356
               

               
Cow position:
               
chr5:67672462-67672257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
159-356
               

               
Cow position:
               
chr5:70189308-70189107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
159-359
               

               
Cow position:
               
chr5:49407161-49407361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
159-359
               

               
Cow position:
               
chr5:67679412-67679211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
143, 103
               

               
Conread position:
               
159-360
               

               
Cow position:
               
chr5:59384455-59384658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
159-361
               

               
Cow position:
               
chr5:29256477-29256677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
143, 100
               

               
Conread position:
               
159-362
               

               
Cow position:
               
chr5:53976279-53976076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
143, 9
               

               
Conread position:
               
159-365
               

               
Cow position:
               
chr5:38853582-38853373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
159-370
               

               
Cow position:
               
chr5:6520236-6520032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
98, 9
               

               
Conread position:
               
159-370
               

               
Cow position:
               
chr5:50858167-50857953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
143, 112
               

               
Conread position:
               
159-370
               

               
Cow position:
               
chr5:65552491-65552690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
159-380
               

               
Cow position:
               
chr5:34976608-34976831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
159-404
               

               
Cow position:
               
chr5:46710814-46710573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
159-404
               

               
Cow position:
               
chr5:46715714-46715473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
159-409
               

               
Cow position:
               
chr5:5202134-5201878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
159-409
               

               
Cow position:
               
chr5:40889064-40889319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
159-522
               

               
Cow position:
               
chr5:57767757-57768117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
143, 36
               

               
Conread position:
               
159-532
               

               
Cow position:
               
chr5:7057166-7057545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 156
               

               
Conread position:
               
159-547
               

               
Cow position:
               
chr5:67932235-67932621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
71, 206
               

               
Conread position:
               
159-554
               

               
Cow position:
               
chr5:1247494-1247113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 39
               

               
Conread position:
               
159-555
               

               
Cow position:
               
chr5:46512537-46512931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
84, 39
               

               
Conread position:
               
159-555
               

               
Cow position:
               
chr5:58519185-58519569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 34
               

               
Conread position:
               
159-558
               

               
Cow position:
               
chr5:47757003-47756601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
145, 100
               

               
Conread position:
               
159-559
               

               
Cow position:
               
chr5:5856091-5855711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
142, 89
               

               
Conread position:
               
159-559
               

               
Cow position:
               
chr5:60952893-60952492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
159-566
               

               
Cow position:
               
chr5:55177111-55176711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
143, 48
               

               
Conread position:
               
160-284
               

               
Cow position:
               
chr5:59517028-59517149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
160-297
               

               
Cow position:
               
chr5:52152877-52153013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
160-311
               

               
Cow position:
               
chr5:61991692-61991540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
142, 94
               

               
Conread position:
               
160-326
               

               
Cow position:
               
chr5:43107027-43106866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
63, 42
               

               
Conread position:
               
160-327
               

               
Cow position:
               
chr5:56881575-56881407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
142, 94
               

               
Conread position:
               
160-333
               

               
Cow position:
               
chr5:63763895-63763723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
142, 94
               

               
Conread position:
               
160-336
               

               
Cow position:
               
chr5:60153998-60153830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
5, 73
               

               
Conread position:
               
160-342
               

               
Cow position:
               
chr5:17987663-17987846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
140, 94
               

               
Conread position:
               
160-348
               

               
Cow position:
               
chr5:23679192-23679001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
142, 94
               

               
Conread position:
               
160-356
               

               
Cow position:
               
chr5:12562531-12562725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
142, 7
               

               
Conread position:
               
160-358
               

               
Cow position:
               
chr5:46421828-46421619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
160-359
               

               
Cow position:
               
chr5:47227040-47226837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
68, 97
               

               
Conread position:
               
160-361
               

               
Cow position:
               
chr5:56059834-56060040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
161-258
               

               
Cow position:
               
chr5:72933881-72933784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
161-309
               

               
Cow position:
               
chr5:27701158-27701011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-313
               

               
Cow position:
               
chr5:34258082-34257930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-313
               

               
Cow position:
               
chr5:53554710-53554861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
103, 35
               

               
Conread position:
               
161-335
               

               
Cow position:
               
chr5:21339031-21339213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
161-335
               

               
Cow position:
               
chr5:43846150-43846329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
115, 7
               

               
Conread position:
               
161-343
               

               
Cow position:
               
chr5:23855448-23855621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
141, 30
               

               
Conread position:
               
161-345
               

               
Cow position:
               
chr5:52831707-52831517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 107
               

               
Conread position:
               
161-347
               

               
Cow position:
               
chr5:4120257-4120069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
45, 93
               

               
Conread position:
               
161-347
               

               
Cow position:
               
chr5:20994860-20995042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
141, 41
               

               
Conread position:
               
161-347
               

               
Cow position:
               
chr5:29054758-29054572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-347
               

               
Cow position:
               
chr5:35394210-35394389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
140, 75
               

               
Conread position:
               
161-347
               

               
Cow position:
               
chr5:36634937-36634751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
141, 110
               

               
Conread position:
               
161-347
               

               
Cow position:
               
chr5:51065745-51065573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
15, 85
               

               
Conread position:
               
161-357
               

               
Cow position:
               
chr5:44901749-44901543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
161-359
               

               
Cow position:
               
chr5:33918474-33918673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
141, 92
               

               
Conread position:
               
161-359
               

               
Cow position:
               
chr5:55166949-55166752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
161-359
               

               
Cow position:
               
chr5:61414577-61414378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-359
               

               
Cow position:
               
chr5:74610471-74610667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-361
               

               
Cow position:
               
chr5:11769501-11769301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
141, 179
               

               
Conread position:
               
161-363
               

               
Cow position:
               
chr5:6438797-6438995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
140, 14
               

               
Conread position:
               
161-365
               

               
Cow position:
               
chr5:4269023-4269226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-370
               

               
Cow position:
               
chr5:59627321-59627121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
141, 34
               

               
Conread position:
               
161-390
               

               
Cow position:
               
chr5:68537435-68537664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
93, 174
               

               
Conread position:
               
161-406
               

               
Cow position:
               
chr5:55783732-55783978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
141, 92
               

               
Conread position:
               
161-505
               

               
Cow position:
               
chr5:33560509-33560851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
141, 69
               

               
Conread position:
               
161-514
               

               
Cow position:
               
chr5:19335548-19335913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
69, 95
               

               
Conread position:
               
161-548
               

               
Cow position:
               
chr5:41165311-41164936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
137, 72
               

               
Conread position:
               
161-557
               

               
Cow position:
               
chr5:61600636-61600246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
161-558
               

               
Cow position:
               
chr5:47316746-47317137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
161-559
               

               
Cow position:
               
chr5:35145564-35145184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
76, 106
               

               
Conread position:
               
161-559
               

               
Cow position:
               
chr5:44028523-44028914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
141, 93
               

               
Conread position:
               
162-295
               

               
Cow position:
               
chr5:70146621-70146748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
162-296
               

               
Cow position:
               
chr5:41639366-41639499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
162-300
               

               
Cow position:
               
chr5:47727109-47726974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
162-300
               

               
Cow position:
               
chr5:56563976-56563847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
162-314
               

               
Cow position:
               
chr5:74039778-74039926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
136, 59
               

               
Conread position:
               
162-318
               

               
Cow position:
               
chr5:4726214-4726379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
162-320
               

               
Cow position:
               
chr5:12504566-12504719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
139, 65
               

               
Conread position:
               
162-320
               

               
Cow position:
               
chr5:19811747-19811593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
137, 6
               

               
Conread position:
               
162-320
               

               
Cow position:
               
chr5:75116342-75116502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
162-324
               

               
Cow position:
               
chr5:14419789-14419942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
137, 56
               

               
Conread position:
               
162-325
               

               
Cow position:
               
chr5:50713522-50713692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
85, 102
               

               
Conread position:
               
162-339
               

               
Cow position:
               
chr5:19278475-19278654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
90, 110
               

               
Conread position:
               
162-342
               

               
Cow position:
               
chr5:34787799-34787623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
139, 13
               

               
Conread position:
               
162-343
               

               
Cow position:
               
chr5:14168073-14167892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
71, 6
               

               
Conread position:
               
162-343
               

               
Cow position:
               
chr5:65140528-65140344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
137, 92
               

               
Conread position:
               
162-344
               

               
Cow position:
               
chr5:20345766-20345584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
136, 117
               

               
Conread position:
               
162-347
               

               
Cow position:
               
chr5:6086113-6086299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
136, 74
               

               
Conread position:
               
162-347
               

               
Cow position:
               
chr5:44396328-44396143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
140, 18
               

               
Conread position:
               
162-347
               

               
Cow position:
               
chr5:46755357-46755172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
140, 65
               

               
Conread position:
               
162-348
               

               
Cow position:
               
chr5:47602036-47601855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
140, 55
               

               
Conread position:
               
162-354
               

               
Cow position:
               
chr5:56860671-56860484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
72, 65
               

               
Conread position:
               
162-355
               

               
Cow position:
               
chr5:64492504-64492310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
140, 97
               

               
Conread position:
               
162-356
               

               
Cow position:
               
chr5:7675930-7676120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
139, 74
               

               
Conread position:
               
162-357
               

               
Cow position:
               
chr5:69765806-69765993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
139, 89
               

               
Conread position:
               
162-359
               

               
Cow position:
               
chr5:18701994-18702188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
140, 25
               

               
Conread position:
               
162-359
               

               
Cow position:
               
chr5:20127135-20126935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
139, 29
               

               
Conread position:
               
162-360
               

               
Cow position:
               
chr5:26147817-26147622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
139, 29
               

               
Conread position:
               
162-361
               

               
Cow position:
               
chr5:3677955-3677753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 6
               

               
Conread position:
               
162-361
               

               
Cow position:
               
chr5:65080666-65080466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
7, 107
               

               
Conread position:
               
162-362
               

               
Cow position:
               
chr5:26894485-26894690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
65, 101
               

               
Conread position:
               
162-370
               

               
Cow position:
               
chr5:14344868-14345076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
140, 89
               

               
Conread position:
               
162-370
               

               
Cow position:
               
chr5:61456076-61455869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
162-388
               

               
Cow position:
               
chr5:41935427-41935649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 91
               

               
Conread position:
               
162-390
               

               
Cow position:
               
chr5:2468985-2469206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
162-393
               

               
Cow position:
               
chr5:58445954-58446186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
138, 150
               

               
Conread position:
               
162-406
               

               
Cow position:
               
chr5:28814718-28814968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
137, 92
               

               
Conread position:
               
162-409
               

               
Cow position:
               
chr5:73167787-73168035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
140, 7
               

               
Conread position:
               
162-432
               

               
Cow position:
               
chr5:51298487-51298755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
139, 84
               

               
Conread position:
               
162-522
               

               
Cow position:
               
chr5:991702-991332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
134, 86
               

               
Conread position:
               
162-537
               

               
Cow position:
               
chr5:52905269-52905644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
138, 99
               

               
Conread position:
               
162-545
               

               
Cow position:
               
chr5:30487455-30487084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
149, 125
               

               
Conread position:
               
162-546
               

               
Cow position:
               
chr5:60209918-60210295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
139, 59
               

               
Conread position:
               
162-551
               

               
Cow position:
               
chr5:55956138-55955745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
162-554
               

               
Cow position:
               
chr5:4322641-4322247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
111, 92
               

               
Conread position:
               
162-558
               

               
Cow position:
               
chr5:29828276-29827886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 89
               

               
Conread position:
               
162-559
               

               
Cow position:
               
chr5:14550354-14550754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 98
               

               
Conread position:
               
162-559
               

               
Cow position:
               
chr5:14903838-14904242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 47
               

               
Conread position:
               
162-559
               

               
Cow position:
               
chr5:18574410-18574002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 163
               

               
Conread position:
               
162-559
               

               
Cow position:
               
chr5:44993811-44994206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
12, 176
               

               
Conread position:
               
162-559
               

               
Cow position:
               
chr5:52164945-52165351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 96
               

               
Conread position:
               
163-258
               

               
Cow position:
               
chr5:28456019-28456114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
163-258
               

               
Cow position:
               
chr5:28459320-28459415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
163-284
               

               
Cow position:
               
chr5:15413325-15413205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
163-286
               

               
Cow position:
               
chr5:52032081-52032202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
163-295
               

               
Cow position:
               
chr5:74050051-74049922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
163-336
               

               
Cow position:
               
chr5:58344647-58344819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
139, 12
               

               
Conread position:
               
163-337
               

               
Cow position:
               
chr5:63939831-63940007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
91, 156
               

               
Conread position:
               
163-342
               

               
Cow position:
               
chr5:61043415-61043235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
139, 90
               

               
Conread position:
               
163-343
               

               
Cow position:
               
chr5:14454271-14454089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
163-345
               

               
Cow position:
               
chr5:25366326-25366151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
139, 28
               

               
Conread position:
               
163-345
               

               
Cow position:
               
chr5:52207772-52207589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
139, 87
               

               
Conread position:
               
163-345
               

               
Cow position:
               
chr5:57086835-57087017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
139, 91
               

               
Conread position:
               
163-347
               

               
Cow position:
               
chr5:39815273-39815457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
76, 33
               

               
Conread position:
               
163-347
               

               
Cow position:
               
chr5:56327499-56327677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
139, 32
               

               
Conread position:
               
163-348
               

               
Cow position:
               
chr5:61771349-61771162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
13, 6
               

               
Conread position:
               
163-350
               

               
Cow position:
               
chr5:57825365-57825183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
138, 38
               

               
Conread position:
               
163-358
               

               
Cow position:
               
chr5:3582782-3582591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
138, 77
               

               
Conread position:
               
163-359
               

               
Cow position:
               
chr5:40170192-40170393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
139, 91
               

               
Conread position:
               
163-361
               

               
Cow position:
               
chr5:17828250-17828449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
139, 90
               

               
Conread position:
               
163-361
               

               
Cow position:
               
chr5:19079470-19079282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
138, 64
               

               
Conread position:
               
163-369
               

               
Cow position:
               
chr5:35190333-35190132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
135, 77
               

               
Conread position:
               
163-370
               

               
Cow position:
               
chr5:6543907-6544116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
139, 99
               

               
Conread position:
               
163-390
               

               
Cow position:
               
chr5:67634281-67634516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
163-482
               

               
Cow position:
               
chr5:50575995-50575692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
139, 11
               

               
Conread position:
               
163-502
               

               
Cow position:
               
chr5:12902146-12901801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 97
               

               
Conread position:
               
163-551
               

               
Cow position:
               
chr5:66582197-66581803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 117
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr5:15479356-15478945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
68, 28
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr5:34625175-34624800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
169, 75
               

               
Conread position:
               
164-264
               

               
Cow position:
               
chr5:17026421-17026322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
164-286
               

               
Cow position:
               
chr5:74690026-74690147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
164-294
               

               
Cow position:
               
chr5:44582534-44582670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
66, 102
               

               
Conread position:
               
164-315
               

               
Cow position:
               
chr5:54712842-54712989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
164-325
               

               
Cow position:
               
chr5:17105071-17104915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
138, 72
               

               
Conread position:
               
164-325
               

               
Cow position:
               
chr5:67340107-67339948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
134, 72
               

               
Conread position:
               
164-326
               

               
Cow position:
               
chr5:55949452-55949614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
137, 84
               

               
Conread position:
               
164-337
               

               
Cow position:
               
chr5:57687354-57687529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
138, 96
               

               
Conread position:
               
164-340
               

               
Cow position:
               
chr5:60207931-60207759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
141, 70
               

               
Conread position:
               
164-342
               

               
Cow position:
               
chr5:70346533-70346350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
12, 32
               

               
Conread position:
               
164-343
               

               
Cow position:
               
chr5:34347507-34347686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
138, 90
               

               
Conread position:
               
164-344
               

               
Cow position:
               
chr5:30492565-30492746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
138, 177
               

               
Conread position:
               
164-345
               

               
Cow position:
               
chr5:36205916-36205736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
138, 94
               

               
Conread position:
               
164-347
               

               
Cow position:
               
chr5:15991419-15991595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
137, 76
               

               
Conread position:
               
164-347
               

               
Cow position:
               
chr5:47279802-47279609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
91, 158
               

               
Conread position:
               
164-347
               

               
Cow position:
               
chr5:59335999-59335814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
164-348
               

               
Cow position:
               
chr5:72034874-72035055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
138, 11
               

               
Conread position:
               
164-354
               

               
Cow position:
               
chr5:29172217-29172024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
28, 97
               

               
Conread position:
               
164-354
               

               
Cow position:
               
chr5:74887673-74887863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
133, 70
               

               
Conread position:
               
164-359
               

               
Cow position:
               
chr5:742954-742763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
138, 31
               

               
Conread position:
               
164-359
               

               
Cow position:
               
chr5:36650781-36650582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
138, 96
               

               
Conread position:
               
164-360
               

               
Cow position:
               
chr5:57399025-57399221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
138, 90
               

               
Conread position:
               
164-360
               

               
Cow position:
               
chr5:63172822-63173012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
138, 67
               

               
Conread position:
               
164-361
               

               
Cow position:
               
chr5:31475910-31475712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
138, 96
               

               
Conread position:
               
164-366
               

               
Cow position:
               
chr5:9486857-9487055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
138, 96
               

               
Conread position:
               
164-370
               

               
Cow position:
               
chr5:15471144-15470954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
138, 24
               

               
Conread position:
               
164-370
               

               
Cow position:
               
chr5:62812053-62811844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
164-405
               

               
Cow position:
               
chr5:56028319-56028558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
137, 82
               

               
Conread position:
               
164-478
               

               
Cow position:
               
chr5:43403135-43402811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
86, 76
               

               
Conread position:
               
164-511
               

               
Cow position:
               
chr5:32338735-32339087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
66, 14
               

               
Conread position:
               
164-559
               

               
Cow position:
               
chr5:3492411-3492033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
128, 31
               

               
Conread position:
               
164-559
               

               
Cow position:
               
chr5:47870828-47871219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 50
               

               
Conread position:
               
165-320
               

               
Cow position:
               
chr5:58454692-58454538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
137, 37
               

               
Conread position:
               
165-359
               

               
Cow position:
               
chr5:48919023-48918841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
135, 84
               

               
Conread position:
               
165-390
               

               
Cow position:
               
chr5:48867245-48867463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
137, 87
               

               
Conread position:
               
166-327
               

               
Cow position:
               
chr5:54554961-54555124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
125, 85
               

               
Conread position:
               
166-360
               

               
Cow position:
               
chr5:19561222-19561419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
136, 88
               

               
Conread position:
               
166-361
               

               
Cow position:
               
chr5:18062086-18062289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
70, 95
               

               
Conread position:
               
166-525
               

               
Cow position:
               
chr5:11539828-11540185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
98, 94
               

               
Conread position:
               
167-283
               

               
Cow position:
               
chr5:62544060-62543949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
167-294
               

               
Cow position:
               
chr5:50703824-50703950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
167-318
               

               
Cow position:
               
chr5:19626799-19626651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
131, 73
               

               
Conread position:
               
167-320
               

               
Cow position:
               
chr5:14457423-14457570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
135, 35
               

               
Conread position:
               
167-326
               

               
Cow position:
               
chr5:718372-718215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
135, 73
               

               
Conread position:
               
167-326
               

               
Cow position:
               
chr5:57447441-57447601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
135, 93
               

               
Conread position:
               
167-336
               

               
Cow position:
               
chr5:60100685-60100525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
134, 65
               

               
Conread position:
               
167-345
               

               
Cow position:
               
chr5:56525487-56525666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
130, 93
               

               
Conread position:
               
167-347
               

               
Cow position:
               
chr5:14920703-14920886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
93, 57
               

               
Conread position:
               
167-347
               

               
Cow position:
               
chr5:37842056-37842235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
134, 70
               

               
Conread position:
               
167-351
               

               
Cow position:
               
chr5:7012626-7012811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
132, 84
               

               
Conread position:
               
167-358
               

               
Cow position:
               
chr5:69033001-69033187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
167-360
               

               
Cow position:
               
chr5:22608862-22608673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
135, 31
               

               
Conread position:
               
167-360
               

               
Cow position:
               
chr5:53935331-53935518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
135, 72
               

               
Conread position:
               
167-360
               

               
Cow position:
               
chr5:66659737-66659540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
167-361
               

               
Cow position:
               
chr5:61580503-61580312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
108, 31
               

               
Conread position:
               
167-370
               

               
Cow position:
               
chr5:30247302-30247501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
167-397
               

               
Cow position:
               
chr5:44810014-44810245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
135, 87
               

               
Conread position:
               
167-540
               

               
Cow position:
               
chr5:12760897-12761265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 84
               

               
Conread position:
               
167-543
               

               
Cow position:
               
chr5:35228921-35229286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
332, 26
               

               
Conread position:
               
167-546
               

               
Cow position:
               
chr5:30276910-30276538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
167-558
               

               
Cow position:
               
chr5:21829087-21828697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 28
               

               
Conread position:
               
167-559
               

               
Cow position:
               
chr5:14314739-14314353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
215, 81
               

               
Conread position:
               
167-559
               

               
Cow position:
               
chr5:30253963-30253573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
134, 61
               

               
Conread position:
               
167-559
               

               
Cow position:
               
chr5:32975335-32975720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 93
               

               
Conread position:
               
167-559
               

               
Cow position:
               
chr5:39447302-39447699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 92
               

               
Conread position:
               
168-332
               

               
Cow position:
               
chr5:60523949-60523791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
133, 66
               

               
Conread position:
               
168-347
               

               
Cow position:
               
chr5:70749964-70750142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
168-356
               

               
Cow position:
               
chr5:71445614-71445425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
134, 83
               

               
Conread position:
               
168-360
               

               
Cow position:
               
chr5:44722291-44722481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
133, 72
               

               
Conread position:
               
168-390
               

               
Cow position:
               
chr5:4267882-4267671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
130, 53
               

               
Conread position:
               
168-540
               

               
Cow position:
               
chr5:63647255-63647626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
174, 92
               

               
Conread position:
               
168-559
               

               
Cow position:
               
chr5:26097513-26097127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 92
               

               
Conread position:
               
168-559
               

               
Cow position:
               
chr5:55756191-55756608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 86
               

               
Conread position:
               
169-345
               

               
Cow position:
               
chr5:37983392-37983214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
65, 92
               

               
Conread position:
               
169-361
               

               
Cow position:
               
chr5:68605084-68604883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
73, 166
               

               
Conread position:
               
169-391
               

               
Cow position:
               
chr5:25020535-25020767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
62, 112
               

               
Conread position:
               
170-360
               

               
Cow position:
               
chr5:61784505-61784696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
132, 90
               

               
Conread position:
               
172-381
               

               
Cow position:
               
chr5:61007282-61007075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
130, 23
               

               
Conread position:
               
172-409
               

               
Cow position:
               
chr5:57994661-57994901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
5, 27
               

               
Conread position:
               
174-335
               

               
Cow position:
               
chr5:9352728-9352566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
15, 75
               

               
Conread position:
               
174-541
               

               
Cow position:
               
chr5:25495135-25495500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 19
               

               
Conread position:
               
175-280
               

               
Cow position:
               
chr5:55342447-55342343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
175-335
               

               
Cow position:
               
chr5:21721260-21721414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
123, 20
               

               
Conread position:
               
175-346
               

               
Cow position:
               
chr5:20288043-20288218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
175-346
               

               
Cow position:
               
chr5:22667285-22667116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
126, 57
               

               
Conread position:
               
175-347
               

               
Cow position:
               
chr5:6695764-6695591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
127, 109
               

               
Conread position:
               
175-355
               

               
Cow position:
               
chr5:22091545-22091728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
20, 81
               

               
Conread position:
               
175-360
               

               
Cow position:
               
chr5:4347478-4347673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
175-360
               

               
Cow position:
               
chr5:16668908-16668728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
126, 59
               

               
Conread position:
               
175-360
               

               
Cow position:
               
chr5:17554820-17555001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
126, 65
               

               
Conread position:
               
175-360
               

               
Cow position:
               
chr5:44734512-44734694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
123, 63
               

               
Conread position:
               
175-368
               

               
Cow position:
               
chr5:62572746-62572555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
127, 60
               

               
Conread position:
               
175-390
               

               
Cow position:
               
chr5:7410161-7409953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 52
               

               
Conread position:
               
175-516
               

               
Cow position:
               
chr5:49474339-49474670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
270, 77
               

               
Conread position:
               
175-545
               

               
Cow position:
               
chr5:64523649-64524035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
127, 79
               

               
Conread position:
               
175-545
               

               
Cow position:
               
chr5:65776162-65776540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
52, 42
               

               
Conread position:
               
175-559
               

               
Cow position:
               
chr5:17062864-17063262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
127, 85
               

               
Conread position:
               
175-559
               

               
Cow position:
               
chr5:30845321-30844942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
123, 59
               

               
Conread position:
               
175-559
               

               
Cow position:
               
chr5:51053433-51053816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 69
               

               
Conread position:
               
176-297
               

               
Cow position:
               
chr5:64161157-64161281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
176-300
               

               
Cow position:
               
chr5:57630289-57630413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
176-343
               

               
Cow position:
               
chr5:65745554-65745717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
123, 71
               

               
Conread position:
               
176-347
               

               
Cow position:
               
chr5:64008643-64008815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
176-359
               

               
Cow position:
               
chr5:51920504-51920320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
176-360
               

               
Cow position:
               
chr5:53980538-53980723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
176-360
               

               
Cow position:
               
chr5:72167284-72167470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
176-361
               

               
Cow position:
               
chr5:20882400-20882594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
65, 17
               

               
Conread position:
               
176-361
               

               
Cow position:
               
chr5:50087982-50087801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
61, 19
               

               
Conread position:
               
176-361
               

               
Cow position:
               
chr5:52723789-52723606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
126, 74
               

               
Conread position:
               
176-361
               

               
Cow position:
               
chr5:54753035-54753222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
176-370
               

               
Cow position:
               
chr5:34108843-34109038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
126, 86
               

               
Conread position:
               
176-370
               

               
Cow position:
               
chr5:39146767-39146963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
176-402
               

               
Cow position:
               
chr5:49501604-49501835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
176-493
               

               
Cow position:
               
chr5:53947113-53946790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
126, 75
               

               
Conread position:
               
176-522
               

               
Cow position:
               
chr5:63234609-63234989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
56, 372
               

               
Conread position:
               
176-551
               

               
Cow position:
               
chr5:45397779-45397418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
125, 22
               

               
Conread position:
               
176-559
               

               
Cow position:
               
chr5:26377466-26377835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
86, 72
               

               
Conread position:
               
177-285
               

               
Cow position:
               
chr5:55268722-55268615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
177-305
               

               
Cow position:
               
chr5:53270704-53270577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
124, 28
               

               
Conread position:
               
177-347
               

               
Cow position:
               
chr5:7139628-7139789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
177-358
               

               
Cow position:
               
chr5:51233811-51233986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
125, 18
               

               
Conread position:
               
177-360
               

               
Cow position:
               
chr5:53795234-53795056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
125, 52
               

               
Conread position:
               
177-360
               

               
Cow position:
               
chr5:54312814-54312632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
124, 59
               

               
Conread position:
               
177-361
               

               
Cow position:
               
chr5:64843752-64843941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
177-370
               

               
Cow position:
               
chr5:3743539-3743343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
67, 90
               

               
Conread position:
               
177-557
               

               
Cow position:
               
chr5:30628940-30629324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
75, 95
               

               
Conread position:
               
177-558
               

               
Cow position:
               
chr5:33414195-33414576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
125, 142
               

               
Conread position:
               
177-558
               

               
Cow position:
               
chr5:50600259-50599886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
124, 59
               

               
Conread position:
               
177-559
               

               
Cow position:
               
chr5:16893565-16893944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
124, 55
               

               
Conread position:
               
178-380
               

               
Cow position:
               
chr5:38169104-38168905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
105, 17
               

               
Conread position:
               
178-390
               

               
Cow position:
               
chr5:12247531-12247736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
119, 9
               

               
Conread position:
               
179-326
               

               
Cow position:
               
chr5:40292726-40292874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
123, 81
               

               
Conread position:
               
179-360
               

               
Cow position:
               
chr5:4864746-4864574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
122, 53
               

               
Conread position:
               
180-311
               

               
Cow position:
               
chr5:29261916-29261784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
122, 70
               

               
Conread position:
               
180-311
               

               
Cow position:
               
chr5:52778354-52778486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
122, 73
               

               
Conread position:
               
180-343
               

               
Cow position:
               
chr5:69682137-69682301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
122, 74
               

               
Conread position:
               
180-345
               

               
Cow position:
               
chr5:61726851-61726685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
122, 82
               

               
Conread position:
               
180-347
               

               
Cow position:
               
chr5:60016374-60016212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
117, 60
               

               
Conread position:
               
180-359
               

               
Cow position:
               
chr5:56548776-56548604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
121, 51
               

               
Conread position:
               
180-360
               

               
Cow position:
               
chr5:69427251-69427422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
122, 52
               

               
Conread position:
               
180-362
               

               
Cow position:
               
chr5:20812759-20812575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
180-370
               

               
Cow position:
               
chr5:60948342-60948154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
121, 68
               

               
Conread position:
               
180-389
               

               
Cow position:
               
chr5:73253615-73253412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
122, 60
               

               
Conread position:
               
180-416
               

               
Cow position:
               
chr5:20779189-20779437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
121, 68
               

               
Conread position:
               
181-320
               

               
Cow position:
               
chr5:47888519-47888660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
73, 91
               

               
Conread position:
               
181-359
               

               
Cow position:
               
chr5:30035278-30035099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
121, 73
               

               
Conread position:
               
181-359
               

               
Cow position:
               
chr5:59330530-59330708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
121, 73
               

               
Conread position:
               
181-360
               

               
Cow position:
               
chr5:25598038-25597864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
121, 59
               

               
Conread position:
               
181-370
               

               
Cow position:
               
chr5:58555365-58555158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
181-391
               

               
Cow position:
               
chr5:16939383-16939594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 73
               

               
Conread position:
               
181-392
               

               
Cow position:
               
chr5:35513430-35513215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 77
               

               
Conread position:
               
182-347
               

               
Cow position:
               
chr5:14542013-14542180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 79
               

               
Conread position:
               
182-360
               

               
Cow position:
               
chr5:38040360-38040533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
120, 49
               

               
Conread position:
               
182-370
               

               
Cow position:
               
chr5:36143186-36143007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
120, 15
               

               
Conread position:
               
182-502
               

               
Cow position:
               
chr5:64168029-64168354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
118, 72
               

               
Conread position:
               
182-559
               

               
Cow position:
               
chr5:29352924-29353299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
117, 65
               

               
Conread position:
               
182-559
               

               
Cow position:
               
chr5:45706244-45705879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
120, 71
               

               
Conread position:
               
183-279
               

               
Cow position:
               
chr5:54052968-54052871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
53, 79
               

               
Conread position:
               
183-358
               

               
Cow position:
               
chr5:69751178-69751353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
119, 71
               

               
Conread position:
               
183-359
               

               
Cow position:
               
chr5:30266678-30266855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
119, 71
               

               
Conread position:
               
183-359
               

               
Cow position:
               
chr5:37713445-37713622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
119, 71
               

               
Conread position:
               
183-359
               

               
Cow position:
               
chr5:56011336-56011160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
183-557
               

               
Cow position:
               
chr5:64137465-64137085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
119, 71
               

               
Conread position:
               
183-559
               

               
Cow position:
               
chr5:64697995-64697612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
69, 151
               

               
Conread position:
               
184-335
               

               
Cow position:
               
chr5:64181380-64181532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
118, 70
               

               
Conread position:
               
184-358
               

               
Cow position:
               
chr5:44344289-44344115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
118, 75
               

               
Conread position:
               
184-359
               

               
Cow position:
               
chr5:23911992-23912168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
118, 67
               

               
Conread position:
               
184-359
               

               
Cow position:
               
chr5:42288867-42288691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
118, 70
               

               
Conread position:
               
184-359
               

               
Cow position:
               
chr5:57279592-57279416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
118, 67
               

               
Conread position:
               
184-361
               

               
Cow position:
               
chr5:51125812-51125979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
117, 44
               

               
Conread position:
               
184-390
               

               
Cow position:
               
chr5:57419590-57419793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
118, 48
               

               
Conread position:
               
184-559
               

               
Cow position:
               
chr5:6503670-6504048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 73
               

               
Conread position:
               
185-301
               

               
Cow position:
               
chr5:2331925-2332040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
185-327
               

               
Cow position:
               
chr5:50525725-50525589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
117, 59
               

               
Conread position:
               
187-343
               

               
Cow position:
               
chr5:32935948-32935792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
115, 67
               

               
Conread position:
               
187-347
               

               
Cow position:
               
chr5:60741448-60741288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
115, 67
               

               
Conread position:
               
187-357
               

               
Cow position:
               
chr5:64026812-64026985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
187-559
               

               
Cow position:
               
chr5:48829358-48828986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
113, 64
               

               
Conread position:
               
188-359
               

               
Cow position:
               
chr5:51539327-51539155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
114, 66
               

               
Conread position:
               
188-370
               

               
Cow position:
               
chr5:55795768-55795946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
110, 59
               

               
Conread position:
               
189-359
               

               
Cow position:
               
chr5:47703924-47704094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
113, 65
               

               
Conread position:
               
191-559
               

               
Cow position:
               
chr5:54350172-54350529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
110, 43
               

               
Conread position:
               
193-359
               

               
Cow position:
               
chr5:65050021-65050177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
194-558
               

               
Cow position:
               
chr5:69461531-69461167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 48
               

               
Conread position:
               
196-352
               

               
Cow position:
               
chr5:31454099-31453949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
200-348
               

               
Cow position:
               
chr5:17602015-17602163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
102, 48
               

               
Conread position:
               
201-344
               

               
Cow position:
               
chr5:46749636-46749780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
101, 37
               

               
Conread position:
               
202-342
               

               
Cow position:
               
chr5:49358491-49358629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
99, 46
               

               
Conread position:
               
202-345
               

               
Cow position:
               
chr5:30497685-30497543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 56
               

               
Conread position:
               
202-361
               

               
Cow position:
               
chr5:61492286-61492123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 61
               

               
Conread position:
               
203-559
               

               
Cow position:
               
chr5:28248362-28248008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
99, 51
               

               
Conread position:
               
204-356
               

               
Cow position:
               
chr5:65679787-65679935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
101, 43
               

               
Conread position:
               
204-359
               

               
Cow position:
               
chr5:22422431-22422587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
98, 50
               

               
Conread position:
               
207-347
               

               
Cow position:
               
chr5:41522501-41522634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
95, 33
               

               
Conread position:
               
208-347
               

               
Cow position:
               
chr5:29979782-29979914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
94, 21
               

               
Conread position:
               
211-346
               

               
Cow position:
               
chr5:11289209-11289346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
91, 42
               

               
Conread position:
               
211-361
               

               
Cow position:
               
chr5:3589208-3589061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
217-559
               

               
Cow position:
               
chr5:26093991-26094338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
218-367
               

               
Cow position:
               
chr5:51490429-51490578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 31
               

               
Conread position:
               
227-370
               

               
Cow position:
               
chr5:9369104-9369250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
10, 6
               

               
Conread position:
               
229-483
               

               
Cow position:
               
chr5:55019458-55019200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
24, 147
               

               
Conread position:
               
229-558
               

               
Cow position:
               
chr5:60715205-60715522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
69, 24
               

               
Conread position:
               
230-371
               

               
Cow position:
               
chr5:57230175-57230318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
230-374
               

               
Cow position:
               
chr5:55129505-55129363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
68, 29
               

               
Conread position:
               
230-507
               

               
Cow position:
               
chr5:26476856-26477131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
73, 29
               

               
Conread position:
               
230-559
               

               
Cow position:
               
chr5:4709988-4710313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
22, 105
               

               
Conread position:
               
230-559
               

               
Cow position:
               
chr5:9089866-9090192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
254, 29
               

               
Conread position:
               
230-559
               

               
Cow position:
               
chr5:12710026-12709717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
230-559
               

               
Cow position:
               
chr5:43992486-43992152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
72, 29
               

               
Conread position:
               
235-512
               

               
Cow position:
               
chr5:53710532-53710820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
67, 27
               

               
Conread position:
               
236-360
               

               
Cow position:
               
chr5:70353825-70353953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
237-558
               

               
Cow position:
               
chr5:54086693-54086368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
64, 22
               

               
Conread position:
               
239-493
               

               
Cow position:
               
chr5:35126208-35125949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
241-370
               

               
Cow position:
               
chr5:26723599-26723469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-518
               

               
Cow position:
               
chr5:39258656-39258395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 88
               

               
Conread position:
               
248-347
               

               
Cow position:
               
chr5:17644484-17644584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
54, 11
               

               
Conread position:
               
248-541
               

               
Cow position:
               
chr5:39875269-39874972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
53, 179
               

               
Conread position:
               
249-526
               

               
Cow position:
               
chr5:69731643-69731375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
53, 10
               

               
Conread position:
               
249-557
               

               
Cow position:
               
chr5:47323605-47323284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
52, 10
               

               
Conread position:
               
249-559
               

               
Cow position:
               
chr5:29771671-29771346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 10
               

               
Conread position:
               
258-558
               

               
Cow position:
               
chr5:52000353-52000051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
263-547
               

               
Cow position:
               
chr5:19813090-19813371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
40, 155
               

               
Conread position:
               
266-559
               

               
Cow position:
               
chr5:63964038-63964341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
301-570
               

               
Cow position:
               
chr5:69520982-69520710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
5, 28
               

               
Conread position:
               
360-559
               

               
Cow position:
               
chr5:56820248-56820430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
123, 21
               

               
Conread position:
               
436-559
               

               
Cow position:
               
chr5:45025964-45026086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 93
               

               
Conread position:
               
437-558
               

               
Cow position:
               
chr5:9859762-9859886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
437-559
               

               
Cow position:
               
chr5:44054083-44054206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 57
               

               
Conread position:
               
439-548
               

               
Cow position:
               
chr5:43816657-43816769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
441-559
               

               
Cow position:
               
chr5:32963682-32963798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
66, 87
               

               
Conread position:
               
441-566
               

               
Cow position:
               
chr5:40039822-40039946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 60
               

               
Conread position:
               
442-558
               

               
Cow position:
               
chr5:59443301-59443419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
443-551
               

               
Cow position:
               
chr5:2851264-2851153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 23
               

               
Conread position:
               
445-555
               

               
Cow position:
               
chr5:40356921-40357035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
445-558
               

               
Cow position:
               
chr5:8994623-8994733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
446-568
               

               
Cow position:
               
chr5:43457573-43457696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
39, 32
               
Show alignments to all cow chromosomes.