Cow genome map
| Conread name: | Ss1.1-Pla1-C0000032_C15.5 |
| Conread position: | 1-200 |
| Cow position: | chr29:31987192-31986993 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-235 |
| Cow position: | chr29:31991920-31991686 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 69 |
| Conread position: | 1-247 |
| Cow position: | chr29:31990564-31990318 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-247 |
| Cow position: | chr29:31994284-31994038 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-398 |
| Cow position: | chr29:31991698-31991319 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 298, 197 |
| Conread position: | 1-424 |
| Cow position: | chr29:31998350-31997948 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 1-431 |
| Cow position: | chr29:31988584-31988136 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 271 |
| Conread position: | 1-432 |
| Cow position: | chr29:31987576-31987145 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr29:31987960-31987529 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr29:31988968-31988537 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr29:31989352-31988921 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr29:31989736-31989305 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr29:31992304-31991873 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr29:31992688-31992257 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr29:31993072-31992641 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 68 |
| Conread position: | 1-432 |
| Cow position: | chr29:31993456-31993025 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr29:31994669-31994237 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 0 |
| Conread position: | 1-432 |
| Cow position: | chr29:31995053-31994622 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr29:31995437-31995006 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr29:31995821-31995390 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr29:31996205-31995774 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr29:31997213-31996782 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr29:31998734-31998303 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-235 |
| Cow position: | chr29:31988180-31987948 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-235 |
| Cow position: | chr29:31990340-31990108 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-235 |
| Cow position: | chr29:31994060-31993828 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-235 |
| Cow position: | chr29:31996827-31996595 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 220, 201 |
| Conread position: | 3-290 |
| Cow position: | chr29:31997433-31997146 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 53, 65 |
| Conread position: | 3-432 |
| Cow position: | chr29:31990118-31989689 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-432 |
| Cow position: | chr29:31990946-31990517 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-432 |
| Cow position: | chr29:31993838-31993409 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-432 |
| Cow position: | chr29:31996605-31996158 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 175 |
| Conread position: | 3-432 |
| Cow position: | chr29:31997817-31997388 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-432 |
| Cow position: | chr29:31991302-31990901 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 122 |
| Conread position: | 35-432 |
| Cow position: | chr29:31999447-31999050 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 67 |
| Conread position: | 150-430 |
| Cow position: | chr29:31998969-31998689 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 274-432 |
| Cow position: | chr29:31997324-31997166 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 298-432 |
| Cow position: | chr29:31988449-31988315 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 298-432 |
| Cow position: | chr29:31990429-31990295 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 298-432 |
| Cow position: | chr29:31994149-31994015 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 304-432 |
| Cow position: | chr29:31996688-31996560 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-432 |
| Cow position: | chr29:31990199-31990073 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-432 |
| Cow position: | chr29:31993919-31993793 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-432 |
| Cow position: | chr29:31988031-31987913 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.