Cow genome map
| Conread name: | Ss1.1-Pla1-C0000934_E19.5 |
| Conread position: | 8-140 |
| Cow position: | chr19:20667687-20667819 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 65, 69 |
| Conread position: | 258-780 |
| Cow position: | chr19:23613855-23614376 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 324 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 10, 61 |
| Conread position: | 302-791 |
| Cow position: | chr19:23613394-23613883 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 310 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 82, 97 |
| Conread position: | 310-775 |
| Cow position: | chr19:43570255-43569789 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 16, 121 |
| Conread position: | 310-791 |
| Cow position: | chr19:23614329-23614807 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 5 |
| Conread position: | 321-792 |
| Cow position: | chr19:23596845-23597313 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 170, 157 |
| Conread position: | 325-768 |
| Cow position: | chr19:14960322-14959881 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 27, 34 |
| Conread position: | 325-768 |
| Cow position: | chr19:43570155-43569714 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 325-780 |
| Cow position: | chr19:23649875-23650330 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 129, 121 |
| Conread position: | 325-782 |
| Cow position: | chr19:14940561-14941018 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 273 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 325-791 |
| Cow position: | chr19:23614509-23614975 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 275 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 58, 46 |
| Conread position: | 325-792 |
| Cow position: | chr19:14940225-14940692 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 96, 105 |
| Conread position: | 325-792 |
| Cow position: | chr19:14940309-14940776 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 325-792 |
| Cow position: | chr19:23613669-23614136 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 279 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 197, 184 |
| Conread position: | 325-792 |
| Cow position: | chr19:23649623-23650090 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 327-792 |
| Cow position: | chr19:20635646-20635181 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 287 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 42, 72 |
| Conread position: | 327-792 |
| Cow position: | chr19:20678190-20678655 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 25, 30 |
| Conread position: | 328-768 |
| Cow position: | chr19:23614008-23614448 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 29 |
| Conread position: | 328-773 |
| Cow position: | chr19:20678275-20678720 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 71, 45 |
| Conread position: | 328-779 |
| Cow position: | chr19:20635477-20635026 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 233, 206 |
| Conread position: | 328-791 |
| Cow position: | chr19:20635561-20635098 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 65, 88 |
| Conread position: | 334-792 |
| Cow position: | chr19:20677861-20678319 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 152, 181 |
| Conread position: | 349-791 |
| Cow position: | chr19:14960381-14959942 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 280 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 34, 7 |
| Conread position: | 356-792 |
| Cow position: | chr19:23649822-23650258 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 37, 45 |
| Conread position: | 357-791 |
| Cow position: | chr19:14940005-14940439 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 283 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 42, 38 |
| Conread position: | 362-791 |
| Cow position: | chr19:43570360-43569941 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 398-792 |
| Cow position: | chr19:20678093-20678487 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 400-765 |
| Cow position: | chr19:14959182-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 402-791 |
| Cow position: | chr19:20678015-20678402 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 322, 28 |
| Conread position: | 405-791 |
| Cow position: | chr19:20635652-20635266 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 141, 130 |
| Conread position: | 407-792 |
| Cow position: | chr19:20677514-20677899 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 228, 250 |
| Conread position: | 421-792 |
| Cow position: | chr19:14939985-14940356 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 133, 154 |
| Conread position: | 422-792 |
| Cow position: | chr19:20635718-20635349 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 135, 14 |
| Conread position: | 423-780 |
| Cow position: | chr19:14959654-14959298 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 423-792 |
| Cow position: | chr19:23649637-23650006 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 111, 86 |
| Conread position: | 424-790 |
| Cow position: | chr19:23614188-23614554 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 85, 91 |
| Conread position: | 424-792 |
| Cow position: | chr19:14940240-14940608 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 424-792 |
| Cow position: | chr19:23649806-23650174 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 280, 273 |
| Conread position: | 425-780 |
| Cow position: | chr19:23613347-23613704 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 31, 87 |
| Conread position: | 426-792 |
| Cow position: | chr19:14960389-14960025 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 240, 0 |
| Conread position: | 428-791 |
| Cow position: | chr19:23613604-23613967 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 19, 8 |
| Conread position: | 428-791 |
| Cow position: | chr19:23613856-23614219 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 100, 84 |
| Conread position: | 428-792 |
| Cow position: | chr19:23614276-23614640 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 138, 125 |
| Conread position: | 429-789 |
| Cow position: | chr19:23597202-23597562 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 430-792 |
| Cow position: | chr19:20677453-20677815 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 8 |
| Conread position: | 448-792 |
| Cow position: | chr19:43570441-43570108 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 50 |
| Conread position: | 449-792 |
| Cow position: | chr19:20677641-20677983 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 104, 17 |
| Conread position: | 547-792 |
| Cow position: | chr19:23597236-23597481 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 155, 150 |
| Conread position: | 571-783 |
| Cow position: | chr19:14960412-14960200 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 583-779 |
| Cow position: | chr19:14959578-14959382 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 71, 75 |
| Conread position: | 595-791 |
| Cow position: | chr19:23613351-23613547 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.