Cow genome map
| Conread name: | Ss1.1-Pla1-C0000934_E19.5 |
| Conread position: | 9-790 |
| Cow position: | chr22:46653524-46654293 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 634, 228 |
| Conread position: | 322-780 |
| Cow position: | chr22:14430215-14430672 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 248, 11 |
| Conread position: | 325-790 |
| Cow position: | chr22:12399357-12398892 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 207, 183 |
| Conread position: | 325-791 |
| Cow position: | chr22:12399273-12398807 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 235, 242 |
| Conread position: | 325-791 |
| Cow position: | chr22:12399525-12399059 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 96, 106 |
| Conread position: | 325-791 |
| Cow position: | chr22:12476070-12475604 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 325-791 |
| Cow position: | chr22:12499189-12499655 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 34 |
| Conread position: | 325-792 |
| Cow position: | chr22:12385685-12385216 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 226, 238 |
| Conread position: | 325-792 |
| Cow position: | chr22:12399441-12398974 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 63, 48 |
| Conread position: | 326-767 |
| Cow position: | chr22:12499526-12499967 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 73, 65 |
| Conread position: | 327-791 |
| Cow position: | chr22:12431335-12430871 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 275 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 94, 103 |
| Conread position: | 327-791 |
| Cow position: | chr22:14429883-14430347 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 281 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 79, 44 |
| Conread position: | 331-779 |
| Cow position: | chr22:12399932-12399491 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 5, 17 |
| Conread position: | 333-790 |
| Cow position: | chr22:46654256-46654711 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 293 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 333-791 |
| Cow position: | chr22:46654088-46654546 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 385-792 |
| Cow position: | chr22:12475756-12475351 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 137, 12 |
| Conread position: | 389-791 |
| Cow position: | chr22:12499507-12499907 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 133, 8 |
| Conread position: | 409-780 |
| Cow position: | chr22:14468042-14468413 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 410-791 |
| Cow position: | chr22:14430134-14430515 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 160, 143 |
| Conread position: | 410-792 |
| Cow position: | chr22:14430050-14430432 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 414-767 |
| Cow position: | chr22:12475645-12475292 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 7, 17 |
| Conread position: | 423-790 |
| Cow position: | chr22:12385417-12385050 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 423-791 |
| Cow position: | chr22:12498867-12499235 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 424-760 |
| Cow position: | chr22:12399090-12398754 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 424-764 |
| Cow position: | chr22:12385248-12384908 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 127, 84 |
| Conread position: | 424-791 |
| Cow position: | chr22:46654431-46654798 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 424-792 |
| Cow position: | chr22:12385332-12384964 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 424-792 |
| Cow position: | chr22:12399678-12399310 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 298, 305 |
| Conread position: | 424-792 |
| Cow position: | chr22:12399762-12399394 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 424-792 |
| Cow position: | chr22:12458526-12458158 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 110, 84 |
| Conread position: | 424-792 |
| Cow position: | chr22:12498952-12499320 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 75 |
| Conread position: | 424-792 |
| Cow position: | chr22:46654095-46654463 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 98, 84 |
| Conread position: | 424-792 |
| Cow position: | chr22:46654263-46654631 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 242 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 98, 84 |
| Conread position: | 427-792 |
| Cow position: | chr22:12399921-12399562 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 428-768 |
| Cow position: | chr22:12458102-12457762 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 124, 131 |
| Conread position: | 428-791 |
| Cow position: | chr22:12458270-12457907 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 209, 219 |
| Conread position: | 428-792 |
| Cow position: | chr22:12431402-12431038 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 96, 84 |
| Conread position: | 430-791 |
| Cow position: | chr22:12476218-12475856 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 430-791 |
| Cow position: | chr22:12499041-12499403 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 443-789 |
| Cow position: | chr22:12431135-12430789 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 448-789 |
| Cow position: | chr22:12431298-12430957 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 108, 119 |
| Conread position: | 448-791 |
| Cow position: | chr22:12458418-12458075 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 488-792 |
| Cow position: | chr22:12458630-12458326 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 216, 209 |
| Conread position: | 489-791 |
| Cow position: | chr22:46654076-46654378 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 70, 75 |
| Conread position: | 490-791 |
| Cow position: | chr22:12475989-12475688 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 60, 79 |
| Conread position: | 508-791 |
| Cow position: | chr22:46653927-46654210 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 219, 224 |
| Conread position: | 514-792 |
| Cow position: | chr22:12419023-12418745 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 272, 267 |
| Conread position: | 565-791 |
| Cow position: | chr22:12432441-12432215 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 574-792 |
| Cow position: | chr22:11641174-11641392 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 169, 155 |
| Conread position: | 579-767 |
| Cow position: | chr22:14429799-14429987 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 586-790 |
| Cow position: | chr22:14429722-14429926 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.