Cow genome map
| Conread name: | Ss1.1-Pla1-C0000934_E19.5 |
| Conread position: | 304-792 |
| Cow position: | chr7:3179913-3180398 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 310 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 43, 12 |
| Conread position: | 306-791 |
| Cow position: | chr7:8324860-8325349 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 106 |
| Conread position: | 325-765 |
| Cow position: | chr7:1015005-1015445 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 270 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 325-790 |
| Cow position: | chr7:3180099-3180564 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 325-791 |
| Cow position: | chr7:3179763-3180229 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 293 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 325-791 |
| Cow position: | chr7:42879042-42878576 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 272 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 231, 242 |
| Conread position: | 325-792 |
| Cow position: | chr7:1014753-1015220 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 44, 55 |
| Conread position: | 325-792 |
| Cow position: | chr7:3180183-3180650 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 280 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 225, 250 |
| Conread position: | 325-792 |
| Cow position: | chr7:3180267-3180734 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 29, 34 |
| Conread position: | 325-792 |
| Cow position: | chr7:18390228-18390695 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 287 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 325-792 |
| Cow position: | chr7:42879126-42878659 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 231, 236 |
| Conread position: | 326-791 |
| Cow position: | chr7:8325136-8325601 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 271 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 327-768 |
| Cow position: | chr7:18390314-18390755 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 328-791 |
| Cow position: | chr7:8325390-8325853 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 332-780 |
| Cow position: | chr7:8243208-8243655 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 332-792 |
| Cow position: | chr7:8325562-8326022 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 275 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 20, 25 |
| Conread position: | 386-792 |
| Cow position: | chr7:18390038-18390443 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 103, 14 |
| Conread position: | 388-791 |
| Cow position: | chr7:11601056-11600655 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 401-791 |
| Cow position: | chr7:11601213-11600823 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 325, 318 |
| Conread position: | 407-773 |
| Cow position: | chr7:8325805-8326172 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 234, 246 |
| Conread position: | 410-791 |
| Cow position: | chr7:8277831-8278212 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 411-780 |
| Cow position: | chr7:1438317-1438686 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 45, 58 |
| Conread position: | 411-790 |
| Cow position: | chr7:42879124-42878745 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 10, 19 |
| Conread position: | 422-789 |
| Cow position: | chr7:11601277-11600909 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 27, 42 |
| Conread position: | 422-792 |
| Cow position: | chr7:42879196-42878827 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 423-791 |
| Cow position: | chr7:11600853-11600487 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 99, 19 |
| Conread position: | 424-755 |
| Cow position: | chr7:11600770-11600439 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 424-755 |
| Cow position: | chr7:42878607-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 100, 84 |
| Conread position: | 424-768 |
| Cow position: | chr7:8277929-8278273 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 233, 213 |
| Conread position: | 424-773 |
| Cow position: | chr7:3180450-3180799 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 230, 234 |
| Conread position: | 424-778 |
| Cow position: | chr7:8278097-8278451 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 149, 131 |
| Conread position: | 424-780 |
| Cow position: | chr7:8278013-8278369 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 234, 224 |
| Conread position: | 424-789 |
| Cow position: | chr7:8324730-8325095 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 62, 52 |
| Conread position: | 424-791 |
| Cow position: | chr7:3180114-3180481 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 424-792 |
| Cow position: | chr7:1015020-1015388 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 129, 140 |
| Conread position: | 424-792 |
| Cow position: | chr7:3179778-3180146 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 424-792 |
| Cow position: | chr7:8325318-8325686 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 127, 147 |
| Conread position: | 425-792 |
| Cow position: | chr7:1014685-1015052 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 35, 46 |
| Conread position: | 427-791 |
| Cow position: | chr7:8277596-8277960 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 11 |
| Conread position: | 428-791 |
| Cow position: | chr7:18390163-18390526 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 34 |
| Conread position: | 428-791 |
| Cow position: | chr7:42878771-42878408 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 127, 139 |
| Conread position: | 428-791 |
| Cow position: | chr7:42879275-42878912 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 128, 134 |
| Conread position: | 428-792 |
| Cow position: | chr7:8325574-8325938 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 50, 43 |
| Conread position: | 430-791 |
| Cow position: | chr7:8324820-8325181 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 53, 42 |
| Conread position: | 443-792 |
| Cow position: | chr7:1439907-1440255 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 454-792 |
| Cow position: | chr7:3179725-3180062 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 488-792 |
| Cow position: | chr7:42878627-42878323 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 497-791 |
| Cow position: | chr7:1014258-1014553 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 23, 68 |
| Conread position: | 498-791 |
| Cow position: | chr7:1014674-1014967 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 55, 66 |
| Conread position: | 568-792 |
| Cow position: | chr7:1439443-1439665 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 570-792 |
| Cow position: | chr7:8325884-8326106 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 572-792 |
| Cow position: | chr7:11601210-11600990 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 595-791 |
| Cow position: | chr7:42879276-42879080 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.