Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-SmaI-SSC5B04.5
        

               Conread position:
               140-511
               

               Cow position:
               chr1:96478489-96478150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               126, 26
               

               Conread position:
               140-527
               

               Cow position:
               chr1:29901163-29901556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 26
               

               Conread position:
               145-391
               

               Cow position:
               chr1:52994812-52994549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               192
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               145-422
               

               Cow position:
               chr1:32354989-32355273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               44, 21
               

               Conread position:
               145-484
               

               Cow position:
               chr1:71748218-71748561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               233
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               98, 21
               

               Conread position:
               145-524
               

               Cow position:
               chr1:82337995-82338373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 80
               

               Conread position:
               145-525
               

               Cow position:
               chr1:1743482-1743861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 18
               

               Conread position:
               145-526
               

               Cow position:
               chr1:33081235-33081623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 26
               

               Conread position:
               145-526
               

               Cow position:
               chr1:42555058-42554695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               265
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               119, 22
               

               Conread position:
               145-526
               

               Cow position:
               chr1:75967225-75966853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 21
               

               Conread position:
               145-526
               

               Cow position:
               chr1:95050311-95050708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 195
               

               Conread position:
               145-526
               

               Cow position:
               chr1:98613030-98612647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               265
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               41, 20
               

               Conread position:
               146-389
               

               Cow position:
               chr1:41252615-41252849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               140, 20
               

               Conread position:
               149-451
               

               Cow position:
               chr1:50260047-50260345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               197, 17
               

               Conread position:
               149-478
               

               Cow position:
               chr1:22836187-22835863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 16
               

               Conread position:
               149-498
               

               Cow position:
               chr1:29605965-29606319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               238
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               115, 14
               

               Conread position:
               149-526
               

               Cow position:
               chr1:2765201-2764830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               247
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               137, 16
               

               Conread position:
               149-526
               

               Cow position:
               chr1:93110841-93111216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               264
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               119, 16
               

               Conread position:
               149-527
               

               Cow position:
               chr1:33986733-33987108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               267
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               115, 16
               

               Conread position:
               149-528
               

               Cow position:
               chr1:61221507-61221116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 17
               

               Conread position:
               150-511
               

               Cow position:
               chr1:97312155-97311800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 19
               

               Conread position:
               159-528
               

               Cow position:
               chr1:85529356-85529727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               260
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               105, 27
               

               Conread position:
               165-526
               

               Cow position:
               chr1:61283467-61283119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               99, 13
               

               Conread position:
               170-488
               

               Cow position:
               chr1:52956015-52955697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 7
               

               Conread position:
               185-491
               

               Cow position:
               chr1:81373659-81373972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               221
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               48, 226
               

               Conread position:
               185-507
               

               Cow position:
               chr1:59247752-59248078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               84, 42
               

               Conread position:
               190-509
               

               Cow position:
               chr1:72997993-72997685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               218
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               74, 43
               

               Conread position:
               193-526
               

               Cow position:
               chr1:38712748-38712413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 34
               

               Conread position:
               194-524
               

               Cow position:
               chr1:101834403-101834075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 42
               

               Conread position:
               195-525
               

               Cow position:
               chr1:78558458-78558128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 217
               

               Conread position:
               197-526
               

               Cow position:
               chr1:54477823-54477501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 152
               

               Conread position:
               199-526
               

               Cow position:
               chr1:77657569-77657235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 12
               

               Conread position:
               202-466
               

               Cow position:
               chr1:53040937-53041203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               62, 26
               

               Conread position:
               202-526
               

               Cow position:
               chr1:71818740-71819066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 25
               

               Conread position:
               203-485
               

               Cow position:
               chr1:7971211-7970931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               25, 30
               

               Conread position:
               205-407
               

               Cow position:
               chr1:34856944-34857150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               206-526
               

               Cow position:
               chr1:61661556-61661872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               221
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               82, 30
               

               Conread position:
               207-472
               

               Cow position:
               chr1:21277553-21277819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               34, 133
               

               Conread position:
               212-524
               

               Cow position:
               chr1:40689459-40689149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               225
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               52, 172
               

               Conread position:
               213-384
               

               Cow position:
               chr1:97938403-97938232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               53, 14
               

               Conread position:
               214-508
               

               Cow position:
               chr1:96193143-96193442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               211
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               56, 246
               

               Conread position:
               214-511
               

               Cow position:
               chr1:85361604-85361308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 13
               

               Conread position:
               214-518
               

               Cow position:
               chr1:53328053-53328336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               55, 13
               

               Conread position:
               214-526
               

               Cow position:
               chr1:19883599-19883919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               54, 13
               

               Conread position:
               214-526
               

               Cow position:
               chr1:23659377-23659066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 13
               

               Conread position:
               215-526
               

               Cow position:
               chr1:63260494-63260796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               72, 18
               

               Conread position:
               215-526
               

               Cow position:
               chr1:101973201-101973512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 120
               

               Conread position:
               215-527
               

               Cow position:
               chr1:99105136-99105450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 192
               

               Conread position:
               216-511
               

               Cow position:
               chr1:68782910-68783203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 189
               

               Conread position:
               216-523
               

               Cow position:
               chr1:51394158-51393871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               48, 20
               

               Conread position:
               218-415
               

               Cow position:
               chr1:101551204-101551000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               46, 191
               

               Conread position:
               219-526
               

               Cow position:
               chr1:12804695-12804389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 14
               

               Conread position:
               219-526
               

               Cow position:
               chr1:95654940-95655249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               39, 45
               

               Conread position:
               220-407
               

               Cow position:
               chr1:362658-362472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               45, 7
               

               Conread position:
               220-428
               

               Cow position:
               chr1:70828653-70828445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               164
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               13, 118
               

               Conread position:
               220-451
               

               Cow position:
               chr1:53423194-53422962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               46, 7
               

               Conread position:
               220-525
               

               Cow position:
               chr1:12283359-12283058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 7
               

               Conread position:
               220-526
               

               Cow position:
               chr1:74302120-74302417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               214
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               44, 57
               

               Conread position:
               220-526
               

               Cow position:
               chr1:76748391-76748695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 7
               

               Conread position:
               220-526
               

               Cow position:
               chr1:79278805-79279118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               219
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               44, 193
               

               Conread position:
               222-386
               

               Cow position:
               chr1:58191571-58191734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               43, 5
               

               Conread position:
               222-388
               

               Cow position:
               chr1:18780569-18780737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               222-451
               

               Cow position:
               chr1:15547210-15546987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               172
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               44, 5
               

               Conread position:
               222-466
               

               Cow position:
               chr1:89510414-89510656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 5
               

               Conread position:
               222-522
               

               Cow position:
               chr1:17876249-17876546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               44, 5
               

               Conread position:
               222-524
               

               Cow position:
               chr1:97761369-97761059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               223
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               64, 5
               

               Conread position:
               222-525
               

               Cow position:
               chr1:1382871-1383172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               217
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               43, 5
               

               Conread position:
               222-525
               

               Cow position:
               chr1:38688216-38687915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 5
               

               Conread position:
               222-526
               

               Cow position:
               chr1:7685896-7686198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 5
               

               Conread position:
               222-526
               

               Cow position:
               chr1:12057253-12057554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 5
               

               Conread position:
               222-526
               

               Cow position:
               chr1:23370564-23370864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 5
               

               Conread position:
               222-526
               

               Cow position:
               chr1:50670817-50670514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 5
               

               Conread position:
               222-526
               

               Cow position:
               chr1:56190417-56190719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 5
               

               Conread position:
               222-526
               

               Cow position:
               chr1:59201584-59201886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               216
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               43, 5
               

               Conread position:
               222-526
               

               Cow position:
               chr1:68282535-68282237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 5
               

               Conread position:
               222-526
               

               Cow position:
               chr1:89492239-89492541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 5
               

               Conread position:
               222-526
               

               Cow position:
               chr1:100450448-100450752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               215
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               9, 153
               

               Conread position:
               222-527
               

               Cow position:
               chr1:15333650-15333353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 18
               

               Conread position:
               222-527
               

               Cow position:
               chr1:53397725-53397422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 5
               

               Conread position:
               222-527
               

               Cow position:
               chr1:54199635-54199941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 11
               

               Conread position:
               222-527
               

               Cow position:
               chr1:95071451-95071144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 185
               

               Conread position:
               223-466
               

               Cow position:
               chr1:874385-874138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               50, 186
               

               Conread position:
               223-491
               

               Cow position:
               chr1:61679451-61679707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               42, 9
               

               Conread position:
               223-525
               

               Cow position:
               chr1:83594034-83594336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 182
               

               Conread position:
               223-527
               

               Cow position:
               chr1:30882655-30882962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               223-527
               

               Cow position:
               chr1:55146286-55145978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 96
               

               Conread position:
               223-527
               

               Cow position:
               chr1:56748310-56748005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               217
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               10, 184
               

               Conread position:
               223-527
               

               Cow position:
               chr1:95229401-95229709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               45, 172
               

               Conread position:
               224-386
               

               Cow position:
               chr1:3456613-3456449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               42, 95
               

               Conread position:
               224-431
               

               Cow position:
               chr1:56225218-56225006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               42, 5
               

               Conread position:
               224-443
               

               Cow position:
               chr1:81569295-81569514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               167
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               42, 181
               

               Conread position:
               224-506
               

               Cow position:
               chr1:90621753-90622038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               211
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               46, 81
               

               Conread position:
               224-517
               

               Cow position:
               chr1:55202892-55203193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               207
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               41, 240
               

               Conread position:
               224-519
               

               Cow position:
               chr1:53613456-53613759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 156
               

               Conread position:
               224-524
               

               Cow position:
               chr1:24581382-24581085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 181
               

               Conread position:
               224-524
               

               Cow position:
               chr1:43352908-43353208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 181
               

               Conread position:
               224-526
               

               Cow position:
               chr1:22615920-22616211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               41, 23
               

               Conread position:
               224-526
               

               Cow position:
               chr1:39069218-39069532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               224
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               42, 17
               

               Conread position:
               224-526
               

               Cow position:
               chr1:44164822-44164518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 92
               

               Conread position:
               224-526
               

               Cow position:
               chr1:77620287-77619985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 181
               

               Conread position:
               224-526
               

               Cow position:
               chr1:92196971-92196673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 117
               

               Conread position:
               224-526
               

               Cow position:
               chr1:94226807-94227106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 181
               

               Conread position:
               224-527
               

               Cow position:
               chr1:61724284-61724579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               216
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               62, 19
               

               Conread position:
               224-527
               

               Cow position:
               chr1:64251324-64251630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 190
               

               Conread position:
               225-417
               

               Cow position:
               chr1:56228991-56228799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               41, 15
               

               Conread position:
               225-421
               

               Cow position:
               chr1:61735702-61735899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               41, 180
               

               Conread position:
               225-526
               

               Cow position:
               chr1:4218366-4218666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               217
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               40, 15
               

               Conread position:
               226-385
               

               Cow position:
               chr1:88029030-88028869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               119
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               226-421
               

               Cow position:
               chr1:2219213-2219408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               39, 7
               

               Conread position:
               226-436
               

               Cow position:
               chr1:68446063-68446271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               60, 35
               

               Conread position:
               226-453
               

               Cow position:
               chr1:3924094-3924319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               226-455
               

               Cow position:
               chr1:10519493-10519262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               179
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               40, 6
               

               Conread position:
               226-480
               

               Cow position:
               chr1:45289133-45289382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               192
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               40, 6
               

               Conread position:
               226-483
               

               Cow position:
               chr1:75249974-75249719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               191
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               40, 7
               

               Conread position:
               226-484
               

               Cow position:
               chr1:3963358-3963102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 70
               

               Conread position:
               226-486
               

               Cow position:
               chr1:96637778-96637519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               183
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               39, 14
               

               Conread position:
               226-511
               

               Cow position:
               chr1:80901488-80901780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               39, 7
               

               Conread position:
               226-518
               

               Cow position:
               chr1:72104885-72104596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 7
               

               Conread position:
               226-526
               

               Cow position:
               chr1:89084406-89084107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 7
               

               Conread position:
               226-527
               

               Cow position:
               chr1:83583218-83583518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               45, 52
               

               Conread position:
               227-386
               

               Cow position:
               chr1:3264117-3263957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               119
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-386
               

               Cow position:
               chr1:6200306-6200146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-389
               

               Cow position:
               chr1:91869682-91869844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-390
               

               Cow position:
               chr1:30082483-30082317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-407
               

               Cow position:
               chr1:57760095-57759914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-407
               

               Cow position:
               chr1:72115349-72115169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-453
               

               Cow position:
               chr1:22221121-22221346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               38, 7
               

               Conread position:
               227-453
               

               Cow position:
               chr1:42741020-42740794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-463
               

               Cow position:
               chr1:57255062-57254827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-466
               

               Cow position:
               chr1:78184444-78184206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               183
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               39, 7
               

               Conread position:
               227-467
               

               Cow position:
               chr1:78808036-78807797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-475
               

               Cow position:
               chr1:98534455-98534694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-485
               

               Cow position:
               chr1:40059163-40058910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-486
               

               Cow position:
               chr1:15348482-15348224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-488
               

               Cow position:
               chr1:63760547-63760807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-491
               

               Cow position:
               chr1:17457533-17457270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-491
               

               Cow position:
               chr1:84556666-84556929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-492
               

               Cow position:
               chr1:51732330-51732597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-501
               

               Cow position:
               chr1:14084647-14084921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               200
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-501
               

               Cow position:
               chr1:21539201-21538928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               196
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-502
               

               Cow position:
               chr1:5813866-5813597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-502
               

               Cow position:
               chr1:62223921-62223647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-502
               

               Cow position:
               chr1:97250997-97251271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-508
               

               Cow position:
               chr1:69670478-69670758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               198
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               38, 16
               

               Conread position:
               227-511
               

               Cow position:
               chr1:53579049-53578767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-511
               

               Cow position:
               chr1:82908829-82909111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-511
               

               Cow position:
               chr1:99398614-99398331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               206
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-517
               

               Cow position:
               chr1:76617492-76617780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 6
               

               Conread position:
               227-518
               

               Cow position:
               chr1:30312425-30312135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-518
               

               Cow position:
               chr1:54640023-54639733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               210
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-518
               

               Cow position:
               chr1:86114497-86114207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 6
               

               Conread position:
               227-519
               

               Cow position:
               chr1:21091257-21090967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-519
               

               Cow position:
               chr1:26514614-26514903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               209
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               38, 7
               

               Conread position:
               227-519
               

               Cow position:
               chr1:31405749-31405458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-519
               

               Cow position:
               chr1:40766749-40766457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-520
               

               Cow position:
               chr1:58689896-58689602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               37, 7
               

               Conread position:
               227-522
               

               Cow position:
               chr1:91733618-91733323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-523
               

               Cow position:
               chr1:3908663-3908958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               212
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-523
               

               Cow position:
               chr1:8643250-8642955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-523
               

               Cow position:
               chr1:8845616-8845320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               214
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-523
               

               Cow position:
               chr1:26586219-26585924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               208
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-523
               

               Cow position:
               chr1:56204816-56205111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-523
               

               Cow position:
               chr1:72624851-72624553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-523
               

               Cow position:
               chr1:77748740-77748445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 13
               

               Conread position:
               227-523
               

               Cow position:
               chr1:86497287-86496992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-523
               

               Cow position:
               chr1:87565247-87564952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-524
               

               Cow position:
               chr1:831244-831540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-524
               

               Cow position:
               chr1:2317902-2318190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               39, 6
               

               Conread position:
               227-524
               

               Cow position:
               chr1:17008743-17009032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-524
               

               Cow position:
               chr1:17032599-17032895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-524
               

               Cow position:
               chr1:31708603-31708309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               211
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-524
               

               Cow position:
               chr1:40648548-40648254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               210
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               39, 6
               

               Conread position:
               227-524
               

               Cow position:
               chr1:73062662-73062958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               212
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-524
               

               Cow position:
               chr1:80130613-80130317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:475876-475579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:2990481-2990184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:3440960-3440663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:3931642-3931939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:3969288-3969585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               208
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:6657092-6657390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               218
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:7161821-7162118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:7416475-7416179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               210
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:7712771-7712474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:9593418-9593714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-525
               

               Cow position:
               chr1:10624689-10624392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               215
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:11665543-11665840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:12607756-12608050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               211
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:16820604-16820307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:18961750-18962048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               213
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:19056866-19056569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:19235500-19235796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:20832877-20832582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:23886296-23886593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:23920262-23919965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               209
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               42, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:28769906-28770203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:31350773-31351070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               215
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:31714713-31715010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:32796177-32795880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:34874973-34874676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:37110079-37110376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:39234508-39234806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               216
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:39687263-39686968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               214
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:39890352-39890057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:46121888-46122185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:47418443-47418146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:49772982-49773279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:50687721-50687424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:52378970-52378673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:52979663-52979366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:53564437-53564140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:55292645-55292942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:56619797-56620094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:56667098-56666801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:57272574-57272277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:60114767-60114470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               211
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:60342972-60342675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               208
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:61282008-61281711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               210
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:61493797-61493500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:62529786-62530083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:62928844-62928547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:63340476-63340772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:66145697-66145401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:67006871-67006575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               210
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               38, 16
               

               Conread position:
               227-525
               

               Cow position:
               chr1:67717335-67717632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:68097158-68097455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:68144973-68145270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:69872506-69872803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:70897741-70897444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:71123641-71123938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:74513145-74513442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:76207520-76207814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:76485809-76486106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:76873877-76873578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:77554004-77554302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               213
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               35, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:77841282-77840985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               211
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:81309359-81309062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:82479981-82479684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:82482123-82482419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:83059644-83059941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:84284701-84284404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:84449622-84449326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               211
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:85577859-85578157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 185
               

               Conread position:
               227-525
               

               Cow position:
               chr1:86597553-86597252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               215
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:89234035-89234332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:89792558-89792855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:91674228-91673932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:95457349-95457052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr1:98353397-98353694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               212
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:3930122-3930420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:6046251-6045953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               38, 7
               

               Conread position:
               227-526
               

               Cow position:
               chr1:7197339-7197040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               214
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:7836623-7836917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:9376382-9376679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:13439285-13438992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:14240069-14240367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:17937755-17938053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 7
               

               Conread position:
               227-526
               

               Cow position:
               chr1:18196593-18196295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               213
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               39, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:21257613-21257910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:21300747-21300449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               210
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:25178007-25178305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:25553810-25553502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               38, 7
               

               Conread position:
               227-526
               

               Cow position:
               chr1:26606477-26606775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               215
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:26811062-26811375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:28877093-28876797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:32562541-32562839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:32960208-32960507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               213
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:33040804-33040518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:33365928-33365630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:33547402-33547700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               219
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:33910362-33910064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               214
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:35071319-35071022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:35597817-35598111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:40604023-40603724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:52170847-52171145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               214
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               46, 7
               

               Conread position:
               227-526
               

               Cow position:
               chr1:52354678-52354974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:52372151-52371853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:55780874-55780568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               217
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:56140396-56140696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:56720503-56720801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:57571830-57571532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:58340910-58340614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:61070737-61070459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:63049563-63049265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:63601791-63602088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:64941550-64941852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:65480950-65480652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:66491574-66491277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               215
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:67188426-67188725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               217
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:67831136-67831435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               212
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:68609781-68610078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               215
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               38, 7
               

               Conread position:
               227-526
               

               Cow position:
               chr1:69963313-69963610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:71558752-71559050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               214
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:72766038-72766336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               213
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:72987453-72987155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:73433134-73433431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               207
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:74283327-74283624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               38, 7
               

               Conread position:
               227-526
               

               Cow position:
               chr1:76419853-76419555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:77553195-77553493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:78921012-78921309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               218
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:82091889-82091594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:84447679-84447381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:88983410-88983703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               218
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:89089539-89089837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:90392761-90393059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               213
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:90913821-90913528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               213
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:91888250-91888548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:91903016-91902719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:94465105-94464809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               208
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               59, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:94879085-94879381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:97206352-97206055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               212
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               38, 14
               

               Conread position:
               227-526
               

               Cow position:
               chr1:99837349-99837647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:100510569-100510274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:102424373-102424075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               39, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr1:102743871-102743579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               216
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr1:102815470-102815173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               215
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               38, 14
               

               Conread position:
               227-527
               

               Cow position:
               chr1:4337754-4337456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 7
               

               Conread position:
               227-528
               

               Cow position:
               chr1:9526563-9526263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               209
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-528
               

               Cow position:
               chr1:13150539-13150240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               216
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-528
               

               Cow position:
               chr1:13250550-13250850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-528
               

               Cow position:
               chr1:22011965-22012266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               218
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               228-492
               

               Cow position:
               chr1:36234605-36234872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               58, 6
               

               Conread position:
               228-525
               

               Cow position:
               chr1:8829019-8828721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               212
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               37, 5
               

               Conread position:
               228-526
               

               Cow position:
               chr1:36645455-36645752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 5
               

               Conread position:
               228-526
               

               Cow position:
               chr1:65943224-65943520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 5
               

               Conread position:
               228-526
               

               Cow position:
               chr1:68821128-68821425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               215
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               37, 11
               

               Conread position:
               228-526
               

               Cow position:
               chr1:85776465-85776762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 5
               

               Conread position:
               228-527
               

               Cow position:
               chr1:9437810-9438104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 185
               

               Conread position:
               228-527
               

               Cow position:
               chr1:28516979-28517273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               217
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               37, 5
               

               Conread position:
               228-528
               

               Cow position:
               chr1:8601981-8602279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 5
               

               Conread position:
               229-431
               

               Cow position:
               chr1:6039835-6040037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               34, 11
               

               Conread position:
               229-441
               

               Cow position:
               chr1:32092097-32091885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               36, 11
               

               Conread position:
               229-526
               

               Cow position:
               chr1:20950432-20950138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               211
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               57, 34
               

               Conread position:
               230-519
               

               Cow position:
               chr1:57087513-57087801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 105
               

               Conread position:
               230-525
               

               Cow position:
               chr1:72462873-72462578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 182
               

               Conread position:
               230-526
               

               Cow position:
               chr1:21092826-21092532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 13
               

               Conread position:
               230-526
               

               Cow position:
               chr1:22388502-22388798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               15, 37
               

               Conread position:
               230-526
               

               Cow position:
               chr1:29038537-29038240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               210
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               36, 227
               

               Conread position:
               230-526
               

               Cow position:
               chr1:62507249-62507545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               214
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               35, 110
               

               Conread position:
               230-526
               

               Cow position:
               chr1:73995424-73995130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 20
               

               Conread position:
               230-526
               

               Cow position:
               chr1:97284641-97284934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               36, 195
               

               Conread position:
               231-355
               

               Cow position:
               chr1:80869840-80869716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               99
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               35, 88
               

               Conread position:
               231-374
               

               Cow position:
               chr1:71714711-71714566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               35, 89
               

               Conread position:
               231-384
               

               Cow position:
               chr1:5289195-5289041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               116
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               38, 94
               

               Conread position:
               231-386
               

               Cow position:
               chr1:28012335-28012492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               115
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               231-386
               

               Cow position:
               chr1:41181575-41181419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               231-386
               

               Cow position:
               chr1:44076144-44076306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               123
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               231-389
               

               Cow position:
               chr1:100813045-100813211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               231-390
               

               Cow position:
               chr1:19483147-19483307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               35, 63
               

               Conread position:
               231-391
               

               Cow position:
               chr1:10778308-10778146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               10, 88
               

               Conread position:
               231-399
               

               Cow position:
               chr1:2075594-2075762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               33, 10
               

               Conread position:
               231-399
               

               Cow position:
               chr1:24542935-24543107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               231-404
               

               Cow position:
               chr1:6305109-6305283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               35, 162
               

               Conread position:
               231-407
               

               Cow position:
               chr1:85338862-85338685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               35, 88
               

               Conread position:
               231-407
               

               Cow position:
               chr1:93499356-93499179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               231-407
               

               Cow position:
               chr1:95637276-95637098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               231-409
               

               Cow position:
               chr1:52039371-52039191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               231-410
               

               Cow position:
               chr1:71946636-71946811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               55, 28
               

               Conread position:
               231-419
               

               Cow position:
               chr1:81355969-81356156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               39, 162
               

               Conread position:
               231-423
               

               Cow position:
               chr1:80336516-80336700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               34, 141
               

               Conread position:
               231-425
               

               Cow position:
               chr1:29671777-29671971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               35, 76
               

               Conread position:
               231-426
               

               Cow position:
               chr1:101822762-101822958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               49, 89
               

               Conread position:
               231-427
               

               Cow position:
               chr1:57155926-57156130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               35, 181
               

               Conread position:
               231-429
               

               Cow position:
               chr1:92198507-92198312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               55, 80
               

               Conread position:
               231-430
               

               Cow position:
               chr1:63391038-63391238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               38, 174
               

               Conread position:
               231-430
               

               Cow position:
               chr1:100816276-100816077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               55, 119
               

               Conread position:
               231-435
               

               Cow position:
               chr1:73584682-73584892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               35, 187
               

               Conread position:
               231-440
               

               Cow position:
               chr1:57305565-57305358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               35, 112
               

               Conread position:
               231-441
               

               Cow position:
               chr1:7747980-7747764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               231-441
               

               Cow position:
               chr1:7752146-7751930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               231-444
               

               Cow position:
               chr1:11873621-11873835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               35, 83
               

               Conread position:
               231-444
               

               Cow position:
               chr1:21572777-21572565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               35, 73
               

               Conread position:
               231-444
               

               Cow position:
               chr1:69678647-69678859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               35, 162
               

               Conread position:
               231-446
               

               Cow position:
               chr1:88297601-88297372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               165
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               35, 187
               

               Conread position:
               231-452
               

               Cow position:
               chr1:83712-83489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               168
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               231-453
               

               Cow position:
               chr1:1916767-1916991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               231-453
               

               Cow position:
               chr1:57957124-57957347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               174
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               35, 81
               

               Conread position:
               231-453
               

               Cow position:
               chr1:101852604-101852828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               33, 69
               

               Conread position:
               231-454
               

               Cow position:
               chr1:25282205-25282426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               231-455
               

               Cow position:
               chr1:71822186-71822411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               34, 174
               

               Conread position:
               231-456
               

               Cow position:
               chr1:11226511-11226737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               35, 104
               

               Conread position:
               231-458
               

               Cow position:
               chr1:55020221-55019987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               35, 88
               

               Conread position:
               231-458
               

               Cow position:
               chr1:99136696-99136923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               175
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               38, 148
               

               Conread position:
               231-464
               

               Cow position:
               chr1:55357546-55357785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               33, 180
               

               Conread position:
               231-464
               

               Cow position:
               chr1:84812216-84812449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               177
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               231-465
               

               Cow position:
               chr1:44136717-44136945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               35, 121
               

               Conread position:
               231-466
               

               Cow position:
               chr1:10632470-10632249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               38, 77
               

               Conread position:
               231-466
               

               Cow position:
               chr1:26943043-26942820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               34, 9
               

               Conread position:
               231-466
               

               Cow position:
               chr1:54179406-54179174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               35, 63
               

               Conread position:
               231-466
               

               Cow position:
               chr1:71135899-71135645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               33, 243
               

               Conread position:
               231-466
               

               Cow position:
               chr1:96928531-96928757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               34, 9
               

               Conread position:
               231-471
               

               Cow position:
               chr1:4589747-4589988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               177
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               35, 71
               

               Conread position:
               231-475
               

               Cow position:
               chr1:51968204-51967965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               35, 125
               

               Conread position:
               231-477
               

               Cow position:
               chr1:4368351-4368597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               231-481
               

               Cow position:
               chr1:55260696-55260955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               35, 233
               

               Conread position:
               231-486
               

               Cow position:
               chr1:74822184-74821929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               35, 173
               

               Conread position:
               231-487
               

               Cow position:
               chr1:72069093-72069353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               35, 177
               

               Conread position:
               231-488
               

               Cow position:
               chr1:97422563-97422825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               40, 230
               

               Conread position:
               231-489
               

               Cow position:
               chr1:89742278-89742535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 120
               

               Conread position:
               231-489
               

               Cow position:
               chr1:92880887-92881137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               120, 44
               

               Conread position:
               231-489
               

               Cow position:
               chr1:95176669-95176411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               187
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               35, 172
               

               Conread position:
               231-491
               

               Cow position:
               chr1:3556772-3557031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               190
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               33, 119
               

               Conread position:
               231-491
               

               Cow position:
               chr1:37646538-37646799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               231-491
               

               Cow position:
               chr1:41004633-41004891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 110
               

               Conread position:
               231-492
               

               Cow position:
               chr1:33442205-33442465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               179
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               116, 35
               

               Conread position:
               231-498
               

               Cow position:
               chr1:77648220-77648483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               192
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               53, 173
               

               Conread position:
               231-499
               

               Cow position:
               chr1:3739733-3739466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 77
               

               Conread position:
               231-500
               

               Cow position:
               chr1:79002219-79002491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               197
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               37, 185
               

               Conread position:
               231-502
               

               Cow position:
               chr1:26896091-26896349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               55, 48
               

               Conread position:
               231-502
               

               Cow position:
               chr1:36613541-36613823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               33, 105
               

               Conread position:
               231-503
               

               Cow position:
               chr1:7630938-7630661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               57, 178
               

               Conread position:
               231-506
               

               Cow position:
               chr1:31499361-31499080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               37, 180
               

               Conread position:
               231-507
               

               Cow position:
               chr1:20384891-20385168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               231-507
               

               Cow position:
               chr1:57908972-57908694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               33, 118
               

               Conread position:
               231-508
               

               Cow position:
               chr1:4374604-4374875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               201
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               35, 159
               

               Conread position:
               231-508
               

               Cow position:
               chr1:51843923-51844206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               33, 127
               

               Conread position:
               231-511
               

               Cow position:
               chr1:73017485-73017763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               33, 24
               

               Conread position:
               231-512
               

               Cow position:
               chr1:42176065-42176343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               194
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               33, 164
               

               Conread position:
               231-515
               

               Cow position:
               chr1:37332534-37332819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               38, 132
               

               Conread position:
               231-515
               

               Cow position:
               chr1:45020777-45021058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               200
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               55, 34
               

               Conread position:
               231-517
               

               Cow position:
               chr1:72284565-72284846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               208
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               35, 142
               

               Conread position:
               231-518
               

               Cow position:
               chr1:43893662-43893369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 232
               

               Conread position:
               231-519
               

               Cow position:
               chr1:60032864-60033156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 178
               

               Conread position:
               231-519
               

               Cow position:
               chr1:81859493-81859767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               203
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               231-519
               

               Cow position:
               chr1:97231710-97231427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               35, 96
               

               Conread position:
               231-524
               

               Cow position:
               chr1:37309774-37310075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 182
               

               Conread position:
               231-524
               

               Cow position:
               chr1:42175297-42175015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               35, 91
               

               Conread position:
               231-524
               

               Cow position:
               chr1:53520646-53520348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               219
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               35, 182
               

               Conread position:
               231-524
               

               Cow position:
               chr1:56634612-56634313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 189
               

               Conread position:
               231-524
               

               Cow position:
               chr1:56719047-56718761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 62
               

               Conread position:
               231-524
               

               Cow position:
               chr1:84786092-84786384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 76
               

               Conread position:
               231-524
               

               Cow position:
               chr1:89344643-89344353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 94
               

               Conread position:
               231-525
               

               Cow position:
               chr1:4563074-4563363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               206
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               34, 176
               

               Conread position:
               231-525
               

               Cow position:
               chr1:8659382-8659088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 117
               

               Conread position:
               231-525
               

               Cow position:
               chr1:45007200-45006908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 40
               

               Conread position:
               231-525
               

               Cow position:
               chr1:55273046-55273343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               216
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               34, 9
               

               Conread position:
               231-525
               

               Cow position:
               chr1:61747426-61747719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 57
               

               Conread position:
               231-525
               

               Cow position:
               chr1:77762385-77762083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               33, 190
               

               Conread position:
               231-525
               

               Cow position:
               chr1:82936848-82937144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               212
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               35, 183
               

               Conread position:
               231-525
               

               Cow position:
               chr1:86372043-86372337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 174
               

               Conread position:
               231-525
               

               Cow position:
               chr1:89349711-89349417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 35
               

               Conread position:
               231-525
               

               Cow position:
               chr1:102289462-102289754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               209
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               35, 91
               

               Conread position:
               231-526
               

               Cow position:
               chr1:5178128-5178424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 175
               

               Conread position:
               231-526
               

               Cow position:
               chr1:6795198-6795511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               214
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               39, 191
               

               Conread position:
               231-526
               

               Cow position:
               chr1:8515251-8514962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               213
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               35, 167
               

               Conread position:
               231-526
               

               Cow position:
               chr1:9015903-9015608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               211
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               55, 172
               

               Conread position:
               231-526
               

               Cow position:
               chr1:10881512-10881224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               56, 185
               

               Conread position:
               231-526
               

               Cow position:
               chr1:11914138-11914430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               210
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               35, 104
               

               Conread position:
               231-526
               

               Cow position:
               chr1:15311602-15311301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 183
               

               Conread position:
               231-526
               

               Cow position:
               chr1:19145196-19145491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               53, 33
               

               Conread position:
               231-526
               

               Cow position:
               chr1:20521950-20522240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               201
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               111, 33
               

               Conread position:
               231-526
               

               Cow position:
               chr1:21376568-21376863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 174
               

               Conread position:
               231-526
               

               Cow position:
               chr1:21577541-21577252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               210
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               35, 62
               

               Conread position:
               231-526
               

               Cow position:
               chr1:22227600-22227302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               33, 172
               

               Conread position:
               231-526
               

               Cow position:
               chr1:29916152-29915852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               212
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               34, 179
               

               Conread position:
               231-526
               

               Cow position:
               chr1:31341320-31341605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               216
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               35, 182
               

               Conread position:
               231-526
               

               Cow position:
               chr1:31646435-31646729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 88
               

               Conread position:
               231-526
               

               Cow position:
               chr1:35785772-35785478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               35, 150
               

               Conread position:
               231-526
               

               Cow position:
               chr1:42053591-42053884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 87
               

               Conread position:
               231-526
               

               Cow position:
               chr1:43448045-43448335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               33, 122
               

               Conread position:
               231-526
               

               Cow position:
               chr1:46885828-46885530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               216
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               48, 137
               

               Conread position:
               231-526
               

               Cow position:
               chr1:52753432-52753735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               220
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               35, 88
               

               Conread position:
               231-526
               

               Cow position:
               chr1:53207961-53208262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               34, 170
               

               Conread position:
               231-526
               

               Cow position:
               chr1:53308658-53308959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               219
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               34, 141
               

               Conread position:
               231-526
               

               Cow position:
               chr1:53374169-53373886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               222
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               7, 129
               

               Conread position:
               231-526
               

               Cow position:
               chr1:53495196-53494892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               37, 179
               

               Conread position:
               231-526
               

               Cow position:
               chr1:55429250-55429541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 19
               

               Conread position:
               231-526
               

               Cow position:
               chr1:57969337-57969637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               38, 180
               

               Conread position:
               231-526
               

               Cow position:
               chr1:58439307-58439597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 35
               

               Conread position:
               231-526
               

               Cow position:
               chr1:59019507-59019212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 118
               

               Conread position:
               231-526
               

               Cow position:
               chr1:59166722-59167024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               34, 103
               

               Conread position:
               231-526
               

               Cow position:
               chr1:63036954-63036653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               219
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               34, 182
               

               Conread position:
               231-526
               

               Cow position:
               chr1:66684565-66684866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               33, 145
               

               Conread position:
               231-526
               

               Cow position:
               chr1:67406382-67406083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               55, 34
               

               Conread position:
               231-526
               

               Cow position:
               chr1:68798688-68798986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 177
               

               Conread position:
               231-526
               

               Cow position:
               chr1:71691548-71691254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               231-526
               

               Cow position:
               chr1:72813149-72812855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 111
               

               Conread position:
               231-526
               

               Cow position:
               chr1:74085822-74086111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               213
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               34, 100
               

               Conread position:
               231-526
               

               Cow position:
               chr1:76019946-76020239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 167
               

               Conread position:
               231-526
               

               Cow position:
               chr1:79590834-79590537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 176
               

               Conread position:
               231-526
               

               Cow position:
               chr1:82861507-82861227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               207
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               35, 137
               

               Conread position:
               231-526
               

               Cow position:
               chr1:82880399-82880124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               35, 87
               

               Conread position:
               231-526
               

               Cow position:
               chr1:85142215-85142515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               33, 165
               

               Conread position:
               231-526
               

               Cow position:
               chr1:85163098-85163392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 174
               

               Conread position:
               231-526
               

               Cow position:
               chr1:86578724-86578429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 24
               

               Conread position:
               231-526
               

               Cow position:
               chr1:92963124-92962824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               38, 189
               

               Conread position:
               231-526
               

               Cow position:
               chr1:96964053-96963767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               38, 135
               

               Conread position:
               231-526
               

               Cow position:
               chr1:97100585-97100889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               207
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               30, 146
               

               Conread position:
               231-526
               

               Cow position:
               chr1:97622468-97622770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               214
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               33, 187
               

               Conread position:
               231-527
               

               Cow position:
               chr1:20798814-20798520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 167
               

               Conread position:
               231-527
               

               Cow position:
               chr1:22728782-22728486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 49
               

               Conread position:
               231-527
               

               Cow position:
               chr1:24235784-24236078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 127
               

               Conread position:
               231-527
               

               Cow position:
               chr1:40062182-40061883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 228
               

               Conread position:
               231-527
               

               Cow position:
               chr1:41696795-41696499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               214
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               35, 172
               

               Conread position:
               231-527
               

               Cow position:
               chr1:42874213-42874504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 166
               

               Conread position:
               231-527
               

               Cow position:
               chr1:48731090-48731399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               225
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               35, 195
               

               Conread position:
               231-527
               

               Cow position:
               chr1:56618962-56619247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               217
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               35, 57
               

               Conread position:
               231-527
               

               Cow position:
               chr1:67821484-67821776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 116
               

               Conread position:
               231-527
               

               Cow position:
               chr1:68253325-68253028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               231-527
               

               Cow position:
               chr1:68827244-68827533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               231-527
               

               Cow position:
               chr1:73756827-73756533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 36
               

               Conread position:
               231-527
               

               Cow position:
               chr1:78795019-78795302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 139
               

               Conread position:
               231-527
               

               Cow position:
               chr1:79844203-79843908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 167
               

               Conread position:
               231-527
               

               Cow position:
               chr1:85865527-85865236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 103
               
UCSC Genome Browser
               Conread position:
               231-527
               

               Cow position:
               chr1:89342255-89342539 (view  custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               33, 68
               
UCSC Genome Browser
               
               
               
Conread position: 231-527

               
               
               
Cow position: chr1:92370625-92370928 (view  custom track)

               
               
               
Alignm length: 309

               
               
               
Alignm identity: 219

               
               
               
Alignm E-value: 4.00001e-40

               
               
               
Alignm gaps (pig, cow): 35, 54
UCSC Genome Browser
               
               
               
Conread position: 231-527

               
               
               
Cow position: chr1:95499761-95500061 (view  custom track)

               
               
               
Alignm length: 304

               
               
               
Alignm identity: 223

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 35, 230

               
               
               Conread position:231-527
               
               
               Cow position:chr1:99792522-99792227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:231-527
               
               
               Cow position:chr1:102321122-102321426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:231-528
               
               
               Cow position:chr1:1981378-1981670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:231-528
               
               
               Cow position:chr1:12871287-12871587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):33, 81

               
               
               Conread position:231-528
               
               
               Cow position:chr1:27145939-27146223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:231-528
               
               
               Cow position:chr1:40531581-40531881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:231-528
               
               
               Cow position:chr1:44769375-44769674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 225

               
               
               Conread position:231-528
               
               
               Cow position:chr1:51980961-51980668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 225

               
               
               Conread position:231-528
               
               
               Cow position:chr1:58419658-58419360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:231-528
               
               
               Cow position:chr1:71080862-71081151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:232-407
               
               
               Cow position:chr1:28067864-28067688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:232-431
               
               
               Cow position:chr1:22909894-22909683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:232-434
               
               
               Cow position:chr1:523003-522804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):54, 34

               
               
               Conread position:232-440
               
               
               Cow position:chr1:63596328-63596534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:232-486
               
               
               Cow position:chr1:84170235-84169981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):39, 163

               
               
               Conread position:232-508
               
               
               Cow position:chr1:7202247-7201966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 45

               
               
               Conread position:232-519
               
               
               Cow position:chr1:66242077-66242358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 160

               
               
               Conread position:232-523
               
               
               Cow position:chr1:14561218-14561516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):32, 232

               
               
               Conread position:232-524
               
               
               Cow position:chr1:47791083-47791372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 8

               
               
               Conread position:232-524
               
               
               Cow position:chr1:68601636-68601928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):37, 173

               
               
               Conread position:232-525
               
               
               Cow position:chr1:31535844-31535552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):26, 102

               
               
               Conread position:232-525
               
               
               Cow position:chr1:75744260-75743964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:232-526
               
               
               Cow position:chr1:11728926-11728627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 178

               
               
               Conread position:232-526
               
               
               Cow position:chr1:20001019-20001309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:232-526
               
               
               Cow position:chr1:20099094-20098786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):32, 72

               
               
               Conread position:232-526
               
               
               Cow position:chr1:25856402-25856102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):16, 88

               
               
               Conread position:232-526
               
               
               Cow position:chr1:27495229-27494937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 33

               
               
               Conread position:232-526
               
               
               Cow position:chr1:31190371-31190659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):37, 56

               
               
               Conread position:232-526
               
               
               Cow position:chr1:32630129-32629840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 168

               
               
               Conread position:232-526
               
               
               Cow position:chr1:46693923-46694217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 173

               
               
               Conread position:232-526
               
               
               Cow position:chr1:57646413-57646119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):37, 163

               
               
               Conread position:232-526
               
               
               Cow position:chr1:68276140-68275863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 56

               
               
               Conread position:232-526
               
               
               Cow position:chr1:88338430-88338130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):32, 181

               
               
               Conread position:232-526
               
               
               Cow position:chr1:99209790-99210088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):34, 177

               
               
               Conread position:232-527
               
               
               Cow position:chr1:15464088-15463795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):34, 8

               
               
               Conread position:232-527
               
               
               Cow position:chr1:57576029-57576327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):33, 173

               
               
               Conread position:232-527
               
               
               Cow position:chr1:85028694-85028401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 173

               
               
               Conread position:232-527
               
               
               Cow position:chr1:92433753-92433465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 172

               
               
               Conread position:232-527
               
               
               Cow position:chr1:102784514-102784222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 122

               
               
               Conread position:233-370
               
               
               Cow position:chr1:61392061-61392200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:233-385
               
               
               Cow position:chr1:16336873-16337024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:233-422
               
               
               Cow position:chr1:44836500-44836688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:233-428
               
               
               Cow position:chr1:57264820-57265012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:233-430
               
               
               Cow position:chr1:80421922-80421724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):33, 111

               
               
               Conread position:233-451
               
               
               Cow position:chr1:52592865-52593084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 172

               
               
               Conread position:233-453
               
               
               Cow position:chr1:38479551-38479337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):32, 101

               
               
               Conread position:233-458
               
               
               Cow position:chr1:65907515-65907740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 23

               
               
               Conread position:233-462
               
               
               Cow position:chr1:58066974-58067202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):32, 108

               
               
               Conread position:233-466
               
               
               Cow position:chr1:31720219-31719987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):32, 48

               
               
               Conread position:233-471
               
               
               Cow position:chr1:19442571-19442332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):32, 223

               
               
               Conread position:233-485
               
               
               Cow position:chr1:18182112-18182364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):32, 172

               
               
               Conread position:233-485
               
               
               Cow position:chr1:72012075-72012326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):115, 54

               
               
               Conread position:233-489
               
               
               Cow position:chr1:98577211-98576960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):38, 55

               
               
               Conread position:233-499
               
               
               Cow position:chr1:91799253-91799518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 49

               
               
               Conread position:233-500
               
               
               Cow position:chr1:54207084-54207357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 25

               
               
               Conread position:233-508
               
               
               Cow position:chr1:30066369-30066088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):33, 178

               
               
               Conread position:233-510
               
               
               Cow position:chr1:20002521-20002801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:233-510
               
               
               Cow position:chr1:22229830-22229553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):32, 171

               
               
               Conread position:233-510
               
               
               Cow position:chr1:27309067-27309344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):32, 179

               
               
               Conread position:233-511
               
               
               Cow position:chr1:16973119-16973399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:233-511
               
               
               Cow position:chr1:99224018-99224295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 104

               
               
               Conread position:233-525
               
               
               Cow position:chr1:20846019-20846312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 224

               
               
               Conread position:233-525
               
               
               Cow position:chr1:21420665-21420957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 172

               
               
               Conread position:233-525
               
               
               Cow position:chr1:49268873-49268581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 172

               
               
               Conread position:233-525
               
               
               Cow position:chr1:50656783-50657077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):32, 173

               
               
               Conread position:233-525
               
               
               Cow position:chr1:61330972-61331262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):32, 156

               
               
               Conread position:233-525
               
               
               Cow position:chr1:100707961-100708245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):32, 152

               
               
               Conread position:233-526
               
               
               Cow position:chr1:3381922-3382215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):32, 179

               
               
               Conread position:233-526
               
               
               Cow position:chr1:10790834-10790541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 179

               
               
               Conread position:233-526
               
               
               Cow position:chr1:14981349-14981649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:233-526
               
               
               Cow position:chr1:15743810-15743517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):32, 179

               
               
               Conread position:233-526
               
               
               Cow position:chr1:16116406-16116699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):32, 172

               
               
               Conread position:233-526
               
               
               Cow position:chr1:16839310-16839017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):32, 172

               
               
               Conread position:233-526
               
               
               Cow position:chr1:21835505-21835224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):31, 86

               
               
               Conread position:233-526
               
               
               Cow position:chr1:29429595-29429304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 90

               
               
               Conread position:233-526
               
               
               Cow position:chr1:30372884-30372591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):32, 172

               
               
               Conread position:233-526
               
               
               Cow position:chr1:39100771-39100478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 172

               
               
               Conread position:233-526
               
               
               Cow position:chr1:40122233-40121940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):32, 179

               
               
               Conread position:233-526
               
               
               Cow position:chr1:44094724-44095015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 35

               
               
               Conread position:233-526
               
               
               Cow position:chr1:52507630-52507922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 136

               
               
               Conread position:233-526
               
               
               Cow position:chr1:55137506-55137799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:233-526
               
               
               Cow position:chr1:56425904-56425612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):33, 170

               
               
               Conread position:233-526
               
               
               Cow position:chr1:57362334-57362633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):32, 178

               
               
               Conread position:233-526
               
               
               Cow position:chr1:57390618-57390920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 177

               
               
               Conread position:233-526
               
               
               Cow position:chr1:57660608-57660298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):32, 239

               
               
               Conread position:233-526
               
               
               Cow position:chr1:61005830-61006119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 101

               
               
               Conread position:233-526
               
               
               Cow position:chr1:62140663-62140960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):31, 186

               
               
               Conread position:233-526
               
               
               Cow position:chr1:62711197-62711490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 172

               
               
               Conread position:233-526
               
               
               Cow position:chr1:63041867-63042158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 82

               
               
               Conread position:233-526
               
               
               Cow position:chr1:65390554-65390261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 172

               
               
               Conread position:233-526
               
               
               Cow position:chr1:66971180-66971472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 115

               
               
               Conread position:233-526
               
               
               Cow position:chr1:72087577-72087284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):32, 173

               
               
               Conread position:233-526
               
               
               Cow position:chr1:73442888-73443184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):33, 182

               
               
               Conread position:233-526
               
               
               Cow position:chr1:80184007-80184299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 173

               
               
               Conread position:233-526
               
               
               Cow position:chr1:82162198-82162492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 223

               
               
               Conread position:233-526
               
               
               Cow position:chr1:82920148-82920441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 172

               
               
               Conread position:233-526
               
               
               Cow position:chr1:89185457-89185764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):31, 238

               
               
               Conread position:233-526
               
               
               Cow position:chr1:90604852-90605141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):32, 141

               
               
               Conread position:233-526
               
               
               Cow position:chr1:97075504-97075803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 49

               
               
               Conread position:233-526
               
               
               Cow position:chr1:99628085-99628383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):31, 178

               
               
               Conread position:233-527
               
               
               Cow position:chr1:4026920-4026633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):33, 171

               
               
               Conread position:233-527
               
               
               Cow position:chr1:28679022-28678723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):31, 43

               
               
               Conread position:233-527
               
               
               Cow position:chr1:67008997-67009293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):33, 228

               
               
               Conread position:233-527
               
               
               Cow position:chr1:98618648-98618361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):33, 171

               
               
               Conread position:233-528
               
               
               Cow position:chr1:23117218-23117512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 91

               
               
               Conread position:233-528
               
               
               Cow position:chr1:53458437-53458144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 178

               
               
               Conread position:233-528
               
               
               Cow position:chr1:56412032-56411738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):32, 102

               
               
               Conread position:233-528
               
               
               Cow position:chr1:83136927-83136632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):32, 107

               
               
               Conread position:233-528
               
               
               Cow position:chr1:90297898-90297599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):53, 116

               
               
               Conread position:234-448
               
               
               Cow position:chr1:84255484-84255278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):52, 81

               
               
               Conread position:234-451
               
               
               Cow position:chr1:10064325-10064548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):30, 6

               
               
               Conread position:234-453
               
               
               Cow position:chr1:68912484-68912267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 132

               
               
               Conread position:234-462
               
               
               Cow position:chr1:25241277-25241052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-466
               
               
               Cow position:chr1:47634712-47634943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-467
               
               
               Cow position:chr1:24595548-24595322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):31, 57

               
               
               Conread position:234-471
               
               
               Cow position:chr1:98655985-98656228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 95

               
               
               Conread position:234-485
               
               
               Cow position:chr1:54117219-54116967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):30, 81

               
               
               Conread position:234-491
               
               
               Cow position:chr1:23931861-23932125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 185

               
               
               Conread position:234-491
               
               
               Cow position:chr1:33538071-33537803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:234-509
               
               
               Cow position:chr1:51366097-51365823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-509
               
               
               Cow position:chr1:53015796-53015522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-511
               
               
               Cow position:chr1:32108815-32108536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):31, 179

               
               
               Conread position:234-511
               
               
               Cow position:chr1:76222960-76223237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):32, 171

               
               
               Conread position:234-519
               
               
               Cow position:chr1:13298524-13298241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-523
               
               
               Cow position:chr1:46929963-46930251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-524
               
               
               Cow position:chr1:34534232-34533943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-524
               
               
               Cow position:chr1:68951374-68951086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 171

               
               
               Conread position:234-524
               
               
               Cow position:chr1:86511892-86511604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):32, 87

               
               
               Conread position:234-525
               
               
               Cow position:chr1:1023077-1023367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:1028358-1028068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:7325028-7324738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:7867763-7867473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:8345416-8345706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:8470172-8470462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:8517080-8517369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:8744507-8744796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:15417845-15418135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:17247672-17247962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 7

               
               
               Conread position:234-525
               
               
               Cow position:chr1:17450437-17450727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:19776515-19776225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:19828002-19828294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:21079449-21079739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:22546803-22546513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:26721337-26721628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:31638521-31638811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:32767932-32768221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:33464281-33464571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:34820921-34820631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:35147550-35147840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:37243712-37244002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:39160681-39160971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:42713851-42714140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:47078191-47078481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:47922877-47923167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:48735925-48735635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:52068504-52068213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:52381433-52381145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:52390872-52391162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:57421402-57421691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:62597233-62597522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:64613697-64613407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:66368404-66368692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:69513439-69513729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:70068422-70068710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:70533074-70532784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:71795523-71795233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:72589373-72589663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:72806027-72806317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:72963104-72963394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:75403886-75403595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:76879022-76878731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:78234696-78234986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:79916689-79916985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):31, 170

               
               
               Conread position:234-525
               
               
               Cow position:chr1:83170433-83170143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:89432395-89432104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:95592735-95593025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-525
               
               
               Cow position:chr1:99912277-99912567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-526
               
               
               Cow position:chr1:9262486-9262196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 6

               
               
               Conread position:234-526
               
               
               Cow position:chr1:33855257-33854966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):37, 6

               
               
               Conread position:234-526
               
               
               Cow position:chr1:51884592-51884301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-526
               
               
               Cow position:chr1:54732714-54733000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):30, 6

               
               
               Conread position:234-526
               
               
               Cow position:chr1:66363792-66363497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):30, 185

               
               
               Conread position:234-526
               
               
               Cow position:chr1:69770806-69770515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-526
               
               
               Cow position:chr1:79333995-79334286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:211
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):31, 85

               
               
               Conread position:234-526
               
               
               Cow position:chr1:91106029-91105738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:234-527
               
               
               Cow position:chr1:13451779-13451487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:234-527
               
               
               Cow position:chr1:50931579-50931866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:234-527
               
               
               Cow position:chr1:60120159-60119864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):30, 91

               
               
               Conread position:235-386
               
               
               Cow position:chr1:83184983-83184830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:235-392
               
               
               Cow position:chr1:52913167-52913327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):31, 53

               
               
               Conread position:235-395
               
               
               Cow position:chr1:30665040-30664878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:235-395
               
               
               Cow position:chr1:81290251-81290089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:235-404
               
               
               Cow position:chr1:65394268-65394097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:235-405
               
               
               Cow position:chr1:68717250-68717422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:235-430
               
               
               Cow position:chr1:1801877-1801678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:235-430
               
               
               Cow position:chr1:24412946-24412752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:235-430
               
               
               Cow position:chr1:89937630-89937825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):51, 169

               
               
               Conread position:235-431
               
               
               Cow position:chr1:71797167-71797362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 84

               
               
               Conread position:235-431
               
               
               Cow position:chr1:89729313-89729517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:235-435
               
               
               Cow position:chr1:11020584-11020380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:235-435
               
               
               Cow position:chr1:22826899-22826696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):8, 140

               
               
               Conread position:235-440
               
               
               Cow position:chr1:4441372-4441576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 171

               
               
               Conread position:235-459
               
               
               Cow position:chr1:37660714-37660936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):51, 28

               
               
               Conread position:235-466
               
               
               Cow position:chr1:12419729-12419966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):31, 139

               
               
               Conread position:235-466
               
               
               Cow position:chr1:97778586-97778356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 163

               
               
               Conread position:235-471
               
               
               Cow position:chr1:65144742-65144983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):34, 174

               
               
               Conread position:235-477
               
               
               Cow position:chr1:36874748-36874506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):45, 170

               
               
               Conread position:235-489
               
               
               Cow position:chr1:100400468-100400717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):31, 93

               
               
               Conread position:235-491
               
               
               Cow position:chr1:51983326-51983078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 100

               
               
               Conread position:235-491
               
               
               Cow position:chr1:81180255-81180507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):30, 135

               
               
               Conread position:235-491
               
               
               Cow position:chr1:99222081-99222339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:235-502
               
               
               Cow position:chr1:95765396-95765669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):29, 186

               
               
               Conread position:235-503
               
               
               Cow position:chr1:53650637-53650369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 170

               
               
               Conread position:235-511
               
               
               Cow position:chr1:51376202-51376488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 107

               
               
               Conread position:235-512
               
               
               Cow position:chr1:22628909-22629178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 69

               
               
               Conread position:235-514
               
               
               Cow position:chr1:68818079-68818361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):31, 198

               
               
               Conread position:235-515
               
               
               Cow position:chr1:70534231-70534518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):29, 177

               
               
               Conread position:235-515
               
               
               Cow position:chr1:77867766-77867486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 9

               
               
               Conread position:235-516
               
               
               Cow position:chr1:22637664-22637942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:235-518
               
               
               Cow position:chr1:93527138-93526858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:235-522
               
               
               Cow position:chr1:30034279-30033994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:235-524
               
               
               Cow position:chr1:19465789-19465502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):112, 31

               
               
               Conread position:235-524
               
               
               Cow position:chr1:23634167-23634458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:235-524
               
               
               Cow position:chr1:96184278-96184566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 155

               
               
               Conread position:235-525
               
               
               Cow position:chr1:24445996-24446285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 124

               
               
               Conread position:235-525
               
               
               Cow position:chr1:53369700-53369413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:235-525
               
               
               Cow position:chr1:70380425-70380712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 129

               
               
               Conread position:235-525
               
               
               Cow position:chr1:100537370-100537081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 113

               
               
               Conread position:235-526
               
               
               Cow position:chr1:3340659-3340364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):29, 5

               
               
               Conread position:235-526
               
               
               Cow position:chr1:5770965-5771259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 20

               
               
               Conread position:235-526
               
               
               Cow position:chr1:6165956-6165677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):31, 126

               
               
               Conread position:235-526
               
               
               Cow position:chr1:24561769-24562054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):148, 9

               
               
               Conread position:235-526
               
               
               Cow position:chr1:24571154-24571439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):169, 8

               
               
               Conread position:235-526
               
               
               Cow position:chr1:26702467-26702758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 170

               
               
               Conread position:235-526
               
               
               Cow position:chr1:30041459-30041168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):29, 125

               
               
               Conread position:235-526
               
               
               Cow position:chr1:38418808-38418514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):29, 174

               
               
               Conread position:235-526
               
               
               Cow position:chr1:40530502-40530791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:235-526
               
               
               Cow position:chr1:63905767-63906053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):31, 124

               
               
               Conread position:235-526
               
               
               Cow position:chr1:69941235-69941525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 126

               
               
               Conread position:235-526
               
               
               Cow position:chr1:73196858-73197164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):30, 183

               
               
               Conread position:235-527
               
               
               Cow position:chr1:12596174-12596471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 224

               
               
               Conread position:235-527
               
               
               Cow position:chr1:19517443-19517734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 169

               
               
               Conread position:235-527
               
               
               Cow position:chr1:21954831-21955124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 172

               
               
               Conread position:235-527
               
               
               Cow position:chr1:44154995-44154713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 8

               
               
               Conread position:235-527
               
               
               Cow position:chr1:101792366-101792648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):31, 130

               
               
               Conread position:236-388
               
               
               Cow position:chr1:8129970-8130124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:236-406
               
               
               Cow position:chr1:61350882-61350713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 97

               
               
               Conread position:236-511
               
               
               Cow position:chr1:89766544-89766828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):29, 228

               
               
               Conread position:236-523
               
               
               Cow position:chr1:81779661-81779371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):29, 222

               
               
               Conread position:236-525
               
               
               Cow position:chr1:100759813-100759524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 169

               
               
               Conread position:236-526
               
               
               Cow position:chr1:16589443-16589159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 169

               
               
               Conread position:236-526
               
               
               Cow position:chr1:22295706-22295994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 130

               
               
               Conread position:236-526
               
               
               Cow position:chr1:53313138-53312849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):29, 168

               
               
               Conread position:237-402
               
               
               Cow position:chr1:54258300-54258133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:237-509
               
               
               Cow position:chr1:71666447-71666719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):41, 177

               
               
               Conread position:237-525
               
               
               Cow position:chr1:44818814-44819104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 170

               
               
               Conread position:237-526
               
               
               Cow position:chr1:82378524-82378229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):27, 181

               
               
               Conread position:237-526
               
               
               Cow position:chr1:88298197-88297909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 88

               
               
               Conread position:237-526
               
               
               Cow position:chr1:100421574-100421284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 108

               
               
               Conread position:237-527
               
               
               Cow position:chr1:3062006-3062292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 115

               
               
               Conread position:237-528
               
               
               Cow position:chr1:22777861-22778154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 182

               
               
               Conread position:237-528
               
               
               Cow position:chr1:62776510-62776214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 167

               
               
               Conread position:237-528
               
               
               Cow position:chr1:67290597-67290310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:238-490
               
               
               Cow position:chr1:101634432-101634178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):28, 120

               
               
               Conread position:238-525
               
               
               Cow position:chr1:5162336-5162625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):26, 172

               
               
               Conread position:238-526
               
               
               Cow position:chr1:43380296-43380565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 93

               
               
               Conread position:238-526
               
               
               Cow position:chr1:90235215-90235511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):5, 80

               
               
               Conread position:238-527
               
               
               Cow position:chr1:13637934-13638224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 219

               
               
               Conread position:240-443
               
               
               Cow position:chr1:16272886-16273090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):25, 163

               
               
               Conread position:240-514
               
               
               Cow position:chr1:63240677-63240414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):26, 129

               
               
               Conread position:240-525
               
               
               Cow position:chr1:19157471-19157756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):25, 172

               
               
               Conread position:240-526
               
               
               Cow position:chr1:13404401-13404685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):25, 93

               
               
               Conread position:240-526
               
               
               Cow position:chr1:18224157-18224440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):24, 99

               
               
               Conread position:240-526
               
               
               Cow position:chr1:85413268-85412982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):25, 172

               
               
               Conread position:240-527
               
               
               Cow position:chr1:47653584-47653871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 172

               
               
               Conread position:240-527
               
               
               Cow position:chr1:52054816-52054523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):31, 169

               
               
               Conread position:240-527
               
               
               Cow position:chr1:52564062-52564341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):25, 38

               
               
               Conread position:240-528
               
               
               Cow position:chr1:21430315-21430610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 170

               
               
               Conread position:240-528
               
               
               Cow position:chr1:56643901-56644192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):24, 86

               
               
               Conread position:240-528
               
               
               Cow position:chr1:77103124-77103407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):29, 172

               
               
               Conread position:241-431
               
               
               Cow position:chr1:99642639-99642826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 59

               
               
               Conread position:241-502
               
               
               Cow position:chr1:76554730-76554995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 175

               
               
               Conread position:241-511
               
               
               Cow position:chr1:41735894-41736159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):25, 100

               
               
               Conread position:241-512
               
               
               Cow position:chr1:2464944-2465223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):45, 179

               
               
               Conread position:241-525
               
               
               Cow position:chr1:1403739-1404008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):25, 93

               
               
               Conread position:242-458
               
               
               Cow position:chr1:60280818-60280596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 80

               
               
               Conread position:243-398
               
               
               Cow position:chr1:88970800-88970644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:243-431
               
               
               Cow position:chr1:50679528-50679717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):7, 148

               
               
               Conread position:243-492
               
               
               Cow position:chr1:79165617-79165864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):22, 150

               
               
               Conread position:243-508
               
               
               Cow position:chr1:76208037-76208305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):20, 32

               
               
               Conread position:243-526
               
               
               Cow position:chr1:42316640-42316927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):21, 175

               
               
               Conread position:243-527
               
               
               Cow position:chr1:55585882-55586166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 15

               
               
               Conread position:243-527
               
               
               Cow position:chr1:85774186-85773903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:244-466
               
               
               Cow position:chr1:29935624-29935844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):22, 109

               
               
               Conread position:244-486
               
               
               Cow position:chr1:69078254-69078496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):21, 38

               
               
               Conread position:244-516
               
               
               Cow position:chr1:40310731-40310455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):21, 217

               
               
               Conread position:244-526
               
               
               Cow position:chr1:7739694-7739425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):22, 143

               
               
               Conread position:244-527
               
               
               Cow position:chr1:1348843-1349125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 75

               
               
               Conread position:245-486
               
               
               Cow position:chr1:84240631-84240385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):5, 165

               
               
               Conread position:245-488
               
               
               Cow position:chr1:55163645-55163403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):19, 136

               
               
               Conread position:245-500
               
               
               Cow position:chr1:98551440-98551186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):21, 83

               
               
               Conread position:245-524
               
               
               Cow position:chr1:75443705-75443988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 165

               
               
               Conread position:245-525
               
               
               Cow position:chr1:81363252-81362974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 97

               
               
               Conread position:245-526
               
               
               Cow position:chr1:33716940-33716662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 59

               
               
               Conread position:246-518
               
               
               Cow position:chr1:39479497-39479775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):18, 73

               
               
               Conread position:246-525
               
               
               Cow position:chr1:4032369-4032079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):20, 165

               
               
               Conread position:246-525
               
               
               Cow position:chr1:12374325-12374603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 9

               
               
               Conread position:246-526
               
               
               Cow position:chr1:18414843-18415111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):23, 78

               
               
               Conread position:249-502
               
               
               Cow position:chr1:96136218-96135964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):20, 163

               
               
               Conread position:249-526
               
               
               Cow position:chr1:101007891-101008161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):17, 63

               
               
               Conread position:249-527
               
               
               Cow position:chr1:74939921-74939642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):16, 207

               
               
               Conread position:249-527
               
               
               Cow position:chr1:89485073-89484798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):17, 53

               
               
               Conread position:250-434
               
               
               Cow position:chr1:95017796-95017991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:251-516
               
               
               Cow position:chr1:46940407-46940141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):15, 155

               
               
               Conread position:252-526
               
               
               Cow position:chr1:99571625-99571894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:254-525
               
               
               Cow position:chr1:43225019-43225288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:255-482
               
               
               Cow position:chr1:86073402-86073177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):11, 150

               
               
               Conread position:255-525
               
               
               Cow position:chr1:48346139-48345869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 157

               
               
               Conread position:255-526
               
               
               Cow position:chr1:66835324-66835594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:256-526
               
               
               Cow position:chr1:33900514-33900239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):9, 161

               
               
               Conread position:257-451
               
               
               Cow position:chr1:26498478-26498276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):7, 57

               
               
               Conread position:257-515
               
               
               Cow position:chr1:38382169-38382430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):7, 47

               
               
               Conread position:257-526
               
               
               Cow position:chr1:56857787-56857517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):79, 28

               
               
               Conread position:261-466
               
               
               Cow position:chr1:64678411-64678208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):25, 7

               
               
               Conread position:261-526
               
               
               Cow position:chr1:52434986-52434721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):25, 143

               
               
               Conread position:262-526
               
               
               Cow position:chr1:16797141-16797403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):24, 143

               
               
               Conread position:262-526
               
               
               Cow position:chr1:39112666-39112405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 78

               
               
               Conread position:263-460
               
               
               Cow position:chr1:26838879-26838684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 133

               
               
               Conread position:263-488
               
               
               Cow position:chr1:86504940-86505165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):23, 142

               
               
               Conread position:263-525
               
               
               Cow position:chr1:38423403-38423135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 154

               
               
               Conread position:263-526
               
               
               Cow position:chr1:32360431-32360706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):23, 192

               
               
               Conread position:263-527
               
               
               Cow position:chr1:77100194-77100462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):23, 142

               
               
               Conread position:263-528
               
               
               Cow position:chr1:88530026-88530295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):23, 84

               
               
               Conread position:265-510
               
               
               Cow position:chr1:41093167-41093420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):21, 203

               
               
               Conread position:266-527
               
               
               Cow position:chr1:26934825-26935081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:267-515
               
               
               Cow position:chr1:32913455-32913208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:267-515
               
               
               Cow position:chr1:81925238-81925484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 78

               
               
               Conread position:268-509
               
               
               Cow position:chr1:43649964-43650196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):18, 92

               
               
               Conread position:268-526
               
               
               Cow position:chr1:31391094-31391354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 66

               
               
               Conread position:268-528
               
               
               Cow position:chr1:6334763-6335026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):18, 147

               
               
               Conread position:268-528
               
               
               Cow position:chr1:23099577-23099326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:269-517
               
               
               Cow position:chr1:58167729-58167980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):17, 62

               
               
               Conread position:272-426
               
               
               Cow position:chr1:39427580-39427738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):70, 137

               
               
               Conread position:272-517
               
               
               Cow position:chr1:14650007-14650256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 145

               
               
               Conread position:275-526
               
               
               Cow position:chr1:39702471-39702219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):71, 9

               
               
               Conread position:277-497
               
               
               Cow position:chr1:79914851-79914628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:277-525
               
               
               Cow position:chr1:58219050-58218798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):9, 142

               
               
               Conread position:278-528
               
               
               Cow position:chr1:93040296-93040540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):156, 28

               
               
               Conread position:280-525
               
               
               Cow position:chr1:28811298-28811541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:284-491
               
               
               Cow position:chr1:22813340-22813550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):62, 26

               
               
               Conread position:285-407
               
               
               Cow position:chr1:77114539-77114661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:285-409
               
               
               Cow position:chr1:13761909-13762033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:285-427
               
               
               Cow position:chr1:5635649-5635505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:285-431
               
               
               Cow position:chr1:666049-665905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 68

               
               
               Conread position:285-443
               
               
               Cow position:chr1:41056219-41056072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:285-478
               
               
               Cow position:chr1:15036995-15036802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):58, 81

               
               
               Conread position:285-513
               
               
               Cow position:chr1:21523686-21523464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:285-522
               
               
               Cow position:chr1:26930290-26930523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr1:18699369-18699131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr1:22483664-22483902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr1:26536247-26536485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr1:62967104-62967342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr1:99100478-99100716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:285-526
               
               
               Cow position:chr1:21993943-21994182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:285-526
               
               
               Cow position:chr1:40680790-40681030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:285-526
               
               
               Cow position:chr1:52754595-52754834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):68, 126

               
               
               Conread position:285-526
               
               
               Cow position:chr1:55327299-55327545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):147, 118

               
               
               Conread position:285-526
               
               
               Cow position:chr1:78291495-78291257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:285-527
               
               
               Cow position:chr1:13412054-13411828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:286-511
               
               
               Cow position:chr1:85358821-85358591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):52, 45

               
               
               Conread position:287-526
               
               
               Cow position:chr1:57854668-57854911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):31, 27

               
               
               Conread position:288-526
               
               
               Cow position:chr1:66870873-66871109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:289-526
               
               
               Cow position:chr1:53594718-53594497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:291-525
               
               
               Cow position:chr1:80564144-80564376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:292-446
               
               
               Cow position:chr1:81579279-81579431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):151, 35

               
               
               Conread position:292-524
               
               
               Cow position:chr1:51308056-51307824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:292-524
               
               
               Cow position:chr1:68480756-68480986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:292-525
               
               
               Cow position:chr1:10467857-10468087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):59, 112

               
               
               Conread position:292-525
               
               
               Cow position:chr1:40436726-40436495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:292-525
               
               
               Cow position:chr1:57576968-57577200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:292-527
               
               
               Cow position:chr1:12465101-12465331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):22, 28

               
               
               Conread position:294-508
               
               
               Cow position:chr1:42879694-42879913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):48, 122

               
               
               Conread position:294-515
               
               
               Cow position:chr1:57639832-57640051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):148, 108

               
               
               Conread position:294-525
               
               
               Cow position:chr1:40351785-40351556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:295-526
               
               
               Cow position:chr1:63454247-63454475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:297-450
               
               
               Cow position:chr1:34685866-34685714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:297-483
               
               
               Cow position:chr1:732358-732539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:297-511
               
               
               Cow position:chr1:22480572-22480789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):49, 121

               
               
               Conread position:297-525
               
               
               Cow position:chr1:69503447-69503673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:297-526
               
               
               Cow position:chr1:34397128-34397362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:297-526
               
               
               Cow position:chr1:68845789-68846014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:298-511
               
               
               Cow position:chr1:42887581-42887791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:300-501
               
               
               Cow position:chr1:83081036-83080838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:301-462
               
               
               Cow position:chr1:100771297-100771463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 109

               
               
               Conread position:301-525
               
               
               Cow position:chr1:48810311-48810532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:302-526
               
               
               Cow position:chr1:24909666-24909880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:304-526
               
               
               Cow position:chr1:30495474-30495254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:305-466
               
               
               Cow position:chr1:61149851-61150014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 151

               
               
               Conread position:305-526
               
               
               Cow position:chr1:47543068-47543285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):61, 96

               
               
               Conread position:306-525
               
               
               Cow position:chr1:47072916-47072698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:307-435
               
               
               Cow position:chr1:67577733-67577606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:307-518
               
               
               Cow position:chr1:51789000-51789193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:307-525
               
               
               Cow position:chr1:44556748-44556964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:307-525
               
               
               Cow position:chr1:63046798-63046582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:307-526
               
               
               Cow position:chr1:22630276-22630059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:307-526
               
               
               Cow position:chr1:40089283-40089066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:307-527
               
               
               Cow position:chr1:81913593-81913812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):47, 98

               
               
               Conread position:312-526
               
               
               Cow position:chr1:10034437-10034227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:316-500
               
               
               Cow position:chr1:44126650-44126831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:316-526
               
               
               Cow position:chr1:37887115-37887311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:316-526
               
               
               Cow position:chr1:70053324-70053116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:317-442
               
               
               Cow position:chr1:15049779-15049655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:317-466
               
               
               Cow position:chr1:13578679-13578830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 97

               
               
               Conread position:317-517
               
               
               Cow position:chr1:3771099-3771289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:317-526
               
               
               Cow position:chr1:22253969-22253760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):30, 90

               
               
               Conread position:317-526
               
               
               Cow position:chr1:50765039-50764832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:163
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:317-526
               
               
               Cow position:chr1:83576242-83576450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):162, 86

               
               
               Conread position:317-527
               
               
               Cow position:chr1:98361047-98361254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:319-525
               
               
               Cow position:chr1:20848626-20848830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:319-525
               
               
               Cow position:chr1:48601014-48600813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:319-526
               
               
               Cow position:chr1:70865148-70864943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:319-527
               
               
               Cow position:chr1:24780582-24780784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:321-526
               
               
               Cow position:chr1:69534825-69534623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:321-527
               
               
               Cow position:chr1:55135405-55135201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:324-489
               
               
               Cow position:chr1:6290592-6290428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):13, 80

               
               
               Conread position:324-523
               
               
               Cow position:chr1:97535820-97535618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):73, 108

               
               
               Conread position:329-503
               
               
               Cow position:chr1:64480578-64480749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 60

               
               
               Conread position:329-507
               
               
               Cow position:chr1:91052011-91052187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):164, 12

               
               
               Conread position:330-527
               
               
               Cow position:chr1:77462024-77461829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:340-502
               
               
               Cow position:chr1:18535036-18535196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:340-523
               
               
               Cow position:chr1:76631907-76631728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:340-525
               
               
               Cow position:chr1:9309374-9309191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:340-525
               
               
               Cow position:chr1:54471530-54471713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:340-525
               
               
               Cow position:chr1:72808463-72808280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:340-526
               
               
               Cow position:chr1:47454098-47454281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:341-491
               
               
               Cow position:chr1:31771231-31771088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:341-526
               
               
               Cow position:chr1:30785661-30785843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:341-526
               
               
               Cow position:chr1:70933738-70933919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:342-519
               
               
               Cow position:chr1:32630622-32630447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:342-526
               
               
               Cow position:chr1:79632673-79632855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:343-526
               
               
               Cow position:chr1:20544105-20543922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:343-526
               
               
               Cow position:chr1:33392896-33392715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):127, 58

               
               
               Conread position:343-526
               
               
               Cow position:chr1:72306482-72306658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:346-518
               
               
               Cow position:chr1:1877665-1877496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:348-526
               
               
               Cow position:chr1:64609468-64609644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:349-526
               
               
               Cow position:chr1:66655064-66654890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:349-526
               
               
               Cow position:chr1:80063165-80062991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:350-526
               
               
               Cow position:chr1:39249354-39249528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:351-491
               
               
               Cow position:chr1:86614161-86614023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:351-526
               
               
               Cow position:chr1:4239196-4239022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):66, 80

               
               
               Conread position:351-526
               
               
               Cow position:chr1:52415923-52416094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):136, 19

               
               
               Conread position:352-526
               
               
               Cow position:chr1:93858384-93858212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:353-481
               
               
               Cow position:chr1:24133723-24133849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:354-522
               
               
               Cow position:chr1:12087117-12086951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:354-524
               
               
               Cow position:chr1:79554364-79554196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:354-525
               
               
               Cow position:chr1:12746045-12746214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:354-525
               
               
               Cow position:chr1:17435531-17435701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:354-525
               
               
               Cow position:chr1:29129277-29129109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:357-525
               
               
               Cow position:chr1:53369053-53368883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):81, 53

               
               
               Conread position:357-527
               
               
               Cow position:chr1:97145449-97145616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):113, 42

               
               
               Conread position:358-526
               
               
               Cow position:chr1:13776907-13777073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:359-488
               
               
               Cow position:chr1:80160678-80160551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:359-525
               
               
               Cow position:chr1:21221493-21221657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:359-526
               
               
               Cow position:chr1:46612432-46612597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:361-525
               
               
               Cow position:chr1:6901009-6900847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:361-526
               
               
               Cow position:chr1:37726736-37726892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:361-526
               
               
               Cow position:chr1:44991110-44991276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):110, 49

               
               
               Conread position:364-519
               
               
               Cow position:chr1:79426381-79426529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):151, 24

               
               
               Conread position:366-527
               
               
               Cow position:chr1:95474052-95474211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:367-527
               
               
               Cow position:chr1:99117861-99117709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:369-509
               
               
               Cow position:chr1:9578331-9578193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:369-526
               
               
               Cow position:chr1:94663507-94663353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:372-519
               
               
               Cow position:chr1:71714349-71714206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:372-526
               
               
               Cow position:chr1:16337254-16337406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:372-526
               
               
               Cow position:chr1:88028664-88028512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:377-526
               
               
               Cow position:chr1:73463812-73463666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:378-526
               
               
               Cow position:chr1:28012801-28012946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:380-525
               
               
               Cow position:chr1:61534950-61535092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):86, 30

               
               
               Conread position:382-525
               
               
               Cow position:chr1:84894404-84894263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:382-527
               
               
               Cow position:chr1:43821977-43821834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:383-526
               
               
               Cow position:chr1:58191965-58192106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:383-527
               
               
               Cow position:chr1:10726464-10726322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:388-526
               
               
               Cow position:chr1:3137276-3137140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 23

               
               
               Conread position:391-522
               
               
               Cow position:chr1:81168568-81168697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:391-526
               
               
               Cow position:chr1:59483034-59483167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:391-527
               
               
               Cow position:chr1:5025015-5025147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:393-525
               
               
               Cow position:chr1:52941836-52941706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:393-526
               
               
               Cow position:chr1:11198784-11198916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:393-527
               
               
               Cow position:chr1:61563878-61563746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:394-527
               
               
               Cow position:chr1:6196450-6196581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:398-525
               
               
               Cow position:chr1:59626485-59626358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 58

               
               
               Conread position:403-525
               
               
               Cow position:chr1:17187418-17187539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:404-526
               
               
               Cow position:chr1:67078005-67078127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):13, 52

               
               
               Conread position:417-525
               
               
               Cow position:chr1:52039125-52039018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 0
Show alignments to all cow chromosomes.
Conread position:	140-511
Cow position:	chr1:96478489-96478150 (view UCSC Genome Browser custom track)
Alignm length:	374
Alignm identity:	256
Alignm E-value:	2e-34
Alignm gaps (pig, cow):	126, 26
Conread position:	140-527
Cow position:	chr1:29901163-29901556 (view UCSC Genome Browser custom track)
Alignm length:	397
Alignm identity:	279
Alignm E-value:	0
Alignm gaps (pig, cow):	126, 26
Conread position:	145-391
Cow position:	chr1:52994812-52994549 (view UCSC Genome Browser custom track)
Alignm length:	264
Alignm identity:	192
Alignm E-value:	8e-36
Alignm gaps (pig, cow):	22, 0
Conread position:	145-422
Cow position:	chr1:32354989-32355273 (view UCSC Genome Browser custom track)
Alignm length:	287
Alignm identity:	199
Alignm E-value:	2e-34
Alignm gaps (pig, cow):	44, 21
Conread position:	145-484
Cow position:	chr1:71748218-71748561 (view UCSC Genome Browser custom track)
Alignm length:	350
Alignm identity:	233
Alignm E-value:	6e-34
Alignm gaps (pig, cow):	98, 21
Conread position:	145-524
Cow position:	chr1:82337995-82338373 (view UCSC Genome Browser custom track)
Alignm length:	388
Alignm identity:	269
Alignm E-value:	0
Alignm gaps (pig, cow):	119, 80
Conread position:	145-525
Cow position:	chr1:1743482-1743861 (view UCSC Genome Browser custom track)
Alignm length:	389
Alignm identity:	269
Alignm E-value:	0
Alignm gaps (pig, cow):	126, 18
Conread position:	145-526
Cow position:	chr1:33081235-33081623 (view UCSC Genome Browser custom track)
Alignm length:	395
Alignm identity:	291
Alignm E-value:	0
Alignm gaps (pig, cow):	111, 26
Conread position:	146-389
Cow position:	chr1:41252615-41252849 (view UCSC Genome Browser custom track)
Alignm length:	245
Alignm identity:	172
Alignm E-value:	4e-30
Alignm gaps (pig, cow):	140, 20
Conread position:	149-451
Cow position:	chr1:50260047-50260345 (view UCSC Genome Browser custom track)
Alignm length:	307
Alignm identity:	196
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	197, 17
Conread position:	149-478
Cow position:	chr1:22836187-22835863 (view UCSC Genome Browser custom track)
Alignm length:	332
Alignm identity:	240
Alignm E-value:	0
Alignm gaps (pig, cow):	117, 16
Conread position:	149-498
Cow position:	chr1:29605965-29606319 (view UCSC Genome Browser custom track)
Alignm length:	366
Alignm identity:	238
Alignm E-value:	7e-24
Alignm gaps (pig, cow):	115, 14
Conread position:	149-526
Cow position:	chr1:2765201-2764830 (view UCSC Genome Browser custom track)
Alignm length:	385
Alignm identity:	247
Alignm E-value:	9e-27
Alignm gaps (pig, cow):	137, 16
Conread position:	149-527
Cow position:	chr1:33986733-33987108 (view UCSC Genome Browser custom track)
Alignm length:	387
Alignm identity:	267
Alignm E-value:	7.00649e-45
Alignm gaps (pig, cow):	115, 16
Conread position:	149-528
Cow position:	chr1:61221507-61221116 (view UCSC Genome Browser custom track)
Alignm length:	396
Alignm identity:	274
Alignm E-value:	0
Alignm gaps (pig, cow):	94, 17
Conread position:	150-511
Cow position:	chr1:97312155-97311800 (view UCSC Genome Browser custom track)
Alignm length:	365
Alignm identity:	260
Alignm E-value:	0
Alignm gaps (pig, cow):	119, 19
Conread position:	159-528
Cow position:	chr1:85529356-85529727 (view UCSC Genome Browser custom track)
Alignm length:	379
Alignm identity:	260
Alignm E-value:	1.96182e-44
Alignm gaps (pig, cow):	105, 27
Conread position:	165-526
Cow position:	chr1:61283467-61283119 (view UCSC Genome Browser custom track)
Alignm length:	371
Alignm identity:	244
Alignm E-value:	3e-27
Alignm gaps (pig, cow):	99, 13
Conread position:	170-488
Cow position:	chr1:52956015-52955697 (view UCSC Genome Browser custom track)
Alignm length:	324
Alignm identity:	236
Alignm E-value:	0
Alignm gaps (pig, cow):	11, 7
Conread position:	185-491
Cow position:	chr1:81373659-81373972 (view UCSC Genome Browser custom track)
Alignm length:	316
Alignm identity:	221
Alignm E-value:	9.99967e-42
Alignm gaps (pig, cow):	48, 226