Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-SmaI-SSC5B04.5
        

               Conread position:
               140-525
               

               Cow position:
               chr4:37787047-37786685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 26
               

               Conread position:
               142-526
               

               Cow position:
               chr4:27533032-27533427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               263
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               53, 13
               

               Conread position:
               145-360
               

               Cow position:
               chr4:3283674-3283882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               124, 21
               

               Conread position:
               145-421
               

               Cow position:
               chr4:46529208-46529501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               67, 276
               

               Conread position:
               145-491
               

               Cow position:
               chr4:49885527-49885879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               119, 21
               

               Conread position:
               145-508
               

               Cow position:
               chr4:66547978-66548347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 21
               

               Conread position:
               145-526
               

               Cow position:
               chr4:31348419-31348787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 24
               

               Conread position:
               145-526
               

               Cow position:
               chr4:61066428-61066052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 21
               

               Conread position:
               145-527
               

               Cow position:
               chr4:20299045-20298657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 266
               

               Conread position:
               145-527
               

               Cow position:
               chr4:30170603-30170977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               256
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               43, 21
               

               Conread position:
               147-444
               

               Cow position:
               chr4:11021877-11022173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               117, 63
               

               Conread position:
               149-518
               

               Cow position:
               chr4:31175069-31174688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               258
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               56, 20
               

               Conread position:
               149-526
               

               Cow position:
               chr4:24415058-24414670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 96
               

               Conread position:
               156-400
               

               Cow position:
               chr4:57147075-57146828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               108, 71
               

               Conread position:
               165-450
               

               Cow position:
               chr4:36724771-36724486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               201
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               46, 34
               

               Conread position:
               179-526
               

               Cow position:
               chr4:43762356-43762009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               109, 61
               

               Conread position:
               185-405
               

               Cow position:
               chr4:35981693-35981470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               40, 75
               

               Conread position:
               190-422
               

               Cow position:
               chr4:46596932-46596702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               76, 16
               

               Conread position:
               198-435
               

               Cow position:
               chr4:19410255-19410007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               5, 19
               

               Conread position:
               199-527
               

               Cow position:
               chr4:67408245-67407912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 42
               

               Conread position:
               204-528
               

               Cow position:
               chr4:58948205-58948550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               245
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               24, 31
               

               Conread position:
               206-399
               

               Cow position:
               chr4:14131247-14131055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               63, 17
               

               Conread position:
               210-526
               

               Cow position:
               chr4:30004322-30004628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 13
               

               Conread position:
               210-526
               

               Cow position:
               chr4:51122740-51122418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               221
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               54, 15
               

               Conread position:
               213-436
               

               Cow position:
               chr4:13271884-13271664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               56, 14
               

               Conread position:
               214-426
               

               Cow position:
               chr4:41301262-41301491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               21, 207
               

               Conread position:
               214-507
               

               Cow position:
               chr4:30404111-30403821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               12, 116
               

               Conread position:
               214-527
               

               Cow position:
               chr4:21531896-21532196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               222
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               66, 19
               

               Conread position:
               215-487
               

               Cow position:
               chr4:44612685-44612431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               17, 86
               

               Conread position:
               216-466
               

               Cow position:
               chr4:60030485-60030227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               16, 107
               

               Conread position:
               216-526
               

               Cow position:
               chr4:12560759-12560442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               221
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               131, 55
               

               Conread position:
               216-526
               

               Cow position:
               chr4:20644316-20644008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 11
               

               Conread position:
               216-526
               

               Cow position:
               chr4:39646435-39646121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 180
               

               Conread position:
               216-527
               

               Cow position:
               chr4:61970147-61970449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               224
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               50, 16
               

               Conread position:
               216-527
               

               Cow position:
               chr4:67599992-67600297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               70, 11
               

               Conread position:
               218-526
               

               Cow position:
               chr4:22317420-22317122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 30
               

               Conread position:
               220-382
               

               Cow position:
               chr4:25889120-25889286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               66, 47
               

               Conread position:
               220-452
               

               Cow position:
               chr4:3475349-3475112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               49, 188
               

               Conread position:
               222-471
               

               Cow position:
               chr4:53832778-53832531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 5
               

               Conread position:
               222-491
               

               Cow position:
               chr4:52696925-52696660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               65, 5
               

               Conread position:
               222-502
               

               Cow position:
               chr4:30997685-30997401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               44, 5
               

               Conread position:
               222-525
               

               Cow position:
               chr4:51898729-51898426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               220
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               44, 5
               

               Conread position:
               222-526
               

               Cow position:
               chr4:54930946-54931245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 5
               

               Conread position:
               222-527
               

               Cow position:
               chr4:8413383-8413686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 5
               

               Conread position:
               222-527
               

               Cow position:
               chr4:14470841-14471146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 5
               

               Conread position:
               222-527
               

               Cow position:
               chr4:45644586-45644880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 5
               

               Conread position:
               222-527
               

               Cow position:
               chr4:52177821-52178124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 5
               

               Conread position:
               223-344
               

               Cow position:
               chr4:49089221-49089098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               96
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               223-399
               

               Cow position:
               chr4:69515390-69515568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               6, 18
               

               Conread position:
               223-443
               

               Cow position:
               chr4:24020484-24020707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               43, 91
               

               Conread position:
               223-488
               

               Cow position:
               chr4:19558451-19558185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               43, 10
               

               Conread position:
               223-526
               

               Cow position:
               chr4:7424203-7423892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               13, 35
               

               Conread position:
               223-526
               

               Cow position:
               chr4:49794409-49794109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               224
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               43, 171
               

               Conread position:
               223-526
               

               Cow position:
               chr4:61816718-61817021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               216
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               6, 18
               

               Conread position:
               223-527
               

               Cow position:
               chr4:23509008-23508703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 163
               

               Conread position:
               224-427
               

               Cow position:
               chr4:57931628-57931424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               42, 81
               

               Conread position:
               224-448
               

               Cow position:
               chr4:52017123-52017344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               49, 95
               

               Conread position:
               224-467
               

               Cow position:
               chr4:44073085-44073322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               40, 171
               

               Conread position:
               224-486
               

               Cow position:
               chr4:20139802-20140061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               42, 9
               

               Conread position:
               224-490
               

               Cow position:
               chr4:46456342-46456608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               45, 153
               

               Conread position:
               224-511
               

               Cow position:
               chr4:488759-489053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               9, 176
               

               Conread position:
               224-525
               

               Cow position:
               chr4:6653467-6653173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               217
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               40, 70
               

               Conread position:
               224-526
               

               Cow position:
               chr4:12752505-12752204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 95
               

               Conread position:
               224-526
               

               Cow position:
               chr4:18108516-18108226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               42, 181
               

               Conread position:
               224-526
               

               Cow position:
               chr4:38181420-38181117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               40, 96
               

               Conread position:
               224-526
               

               Cow position:
               chr4:56177543-56177236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               45, 230
               

               Conread position:
               224-526
               

               Cow position:
               chr4:58833480-58833788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               213
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               40, 147
               

               Conread position:
               224-526
               

               Cow position:
               chr4:59106164-59106480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 9
               

               Conread position:
               224-526
               

               Cow position:
               chr4:66668407-66668695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               40, 80
               

               Conread position:
               224-527
               

               Cow position:
               chr4:47730597-47730300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 21
               

               Conread position:
               225-455
               

               Cow position:
               chr4:4319415-4319646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               177
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               7, 136
               

               Conread position:
               225-525
               

               Cow position:
               chr4:50760391-50760697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               40, 8
               

               Conread position:
               225-526
               

               Cow position:
               chr4:1368096-1368389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               41, 94
               

               Conread position:
               225-527
               

               Cow position:
               chr4:3687651-3687355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               208
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               44, 130
               

               Conread position:
               226-425
               

               Cow position:
               chr4:39231798-39232002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               40, 100
               

               Conread position:
               226-427
               

               Cow position:
               chr4:4672608-4672809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               39, 95
               

               Conread position:
               226-429
               

               Cow position:
               chr4:22115311-22115114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               38, 8
               

               Conread position:
               226-442
               

               Cow position:
               chr4:33097233-33097448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               8, 108
               

               Conread position:
               226-442
               

               Cow position:
               chr4:47280401-47280606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               158
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               40, 6
               

               Conread position:
               226-447
               

               Cow position:
               chr4:37620163-37620390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               38, 7
               

               Conread position:
               226-500
               

               Cow position:
               chr4:46549814-46549539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               212
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               14, 53
               

               Conread position:
               226-511
               

               Cow position:
               chr4:61709580-61709865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               38, 11
               

               Conread position:
               226-515
               

               Cow position:
               chr4:47773907-47774197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               208
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               63, 181
               

               Conread position:
               226-524
               

               Cow position:
               chr4:42672895-42672598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 6
               

               Conread position:
               226-526
               

               Cow position:
               chr4:2002913-2003217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               211
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               40, 14
               

               Conread position:
               226-526
               

               Cow position:
               chr4:36900055-36899759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 7
               

               Conread position:
               226-526
               

               Cow position:
               chr4:61450493-61450206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               220
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               40, 109
               

               Conread position:
               226-526
               

               Cow position:
               chr4:65538851-65539156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 6
               

               Conread position:
               227-382
               

               Cow position:
               chr4:10823744-10823588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-397
               

               Cow position:
               chr4:14930187-14930016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               42, 7
               

               Conread position:
               227-402
               

               Cow position:
               chr4:17616419-17616243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-406
               

               Cow position:
               chr4:9358088-9357908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-407
               

               Cow position:
               chr4:17282841-17283022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               41, 6
               

               Conread position:
               227-425
               

               Cow position:
               chr4:10333267-10333464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-425
               

               Cow position:
               chr4:22896530-22896728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-428
               

               Cow position:
               chr4:11191687-11191486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-453
               

               Cow position:
               chr4:59643301-59643076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-466
               

               Cow position:
               chr4:64061348-64061586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-472
               

               Cow position:
               chr4:29529137-29529383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-490
               

               Cow position:
               chr4:60124055-60124317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               192
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-491
               

               Cow position:
               chr4:33019963-33020226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               192
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-497
               

               Cow position:
               chr4:46069027-46068745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               37, 30
               

               Conread position:
               227-499
               

               Cow position:
               chr4:47502184-47501905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-502
               

               Cow position:
               chr4:26399055-26398781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-506
               

               Cow position:
               chr4:43381903-43381619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               42, 13
               

               Conread position:
               227-509
               

               Cow position:
               chr4:45097295-45097585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               196
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               37, 10
               

               Conread position:
               227-511
               

               Cow position:
               chr4:6414433-6414150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               201
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-511
               

               Cow position:
               chr4:6446437-6446154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               201
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-511
               

               Cow position:
               chr4:10136265-10135984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-511
               

               Cow position:
               chr4:42907452-42907167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               59, 16
               

               Conread position:
               227-514
               

               Cow position:
               chr4:6030606-6030332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-523
               

               Cow position:
               chr4:56191484-56191779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-523
               

               Cow position:
               chr4:60579449-60579744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-524
               

               Cow position:
               chr4:17752490-17752194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-524
               

               Cow position:
               chr4:30306905-30307201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-524
               

               Cow position:
               chr4:30435940-30435643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               215
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-524
               

               Cow position:
               chr4:43884765-43884478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-525
               

               Cow position:
               chr4:162761-162464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:607286-606989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:652708-652411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:3800607-3800905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               213
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:4487646-4487348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:7080570-7080273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:8414637-8414934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:9375412-9375709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:10123087-10122789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               214
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:13375298-13375001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:14048105-14047808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:14967760-14967463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:16642495-16642199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-525
               

               Cow position:
               chr4:16765825-16766122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:17822210-17821914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:18331767-18331470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:18599720-18600017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:18738063-18738360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               212
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:18975775-18976073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:20025317-20025020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:21044483-21044780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:24140566-24140259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:26131839-26131542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:28456352-28456649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:29834303-29834006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:31535496-31535199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:31955822-31956119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:37707474-37707771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:42596922-42596624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:42616865-42616569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               212
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:42865688-42865391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:44051952-44051659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               215
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:44663000-44663300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:44777510-44777807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:45105277-45105574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:45113710-45114007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               212
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:46021271-46020974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:46253795-46254092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:46743567-46743863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:47020983-47020687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               211
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:47116982-47116687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:47264458-47264161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:48733357-48733060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:48959172-48959468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               212
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:53316354-53316653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               207
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:54161386-54161683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:57493606-57493903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:60677053-60677349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:62120689-62120391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:62453307-62453604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-525
               

               Cow position:
               chr4:63194902-63195199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr4:2190621-2190915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:2263031-2263328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               212
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               42, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:3354265-3354563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:4419727-4419429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr4:5440980-5441278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr4:6210415-6210118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr4:6457056-6457361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               38, 7
               

               Conread position:
               227-526
               

               Cow position:
               chr4:6862524-6862822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr4:7249846-7250137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               210
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               39, 7
               

               Conread position:
               227-526
               

               Cow position:
               chr4:8678483-8678185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr4:8890201-8890497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 7
               

               Conread position:
               227-526
               

               Cow position:
               chr4:10553924-10553621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:11640895-11641193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr4:11930647-11930345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               214
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:12237568-12237866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:12589271-12588976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:13979721-13979426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 7
               

               Conread position:
               227-526
               

               Cow position:
               chr4:16859041-16859338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               210
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:18812558-18812854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               214
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:20243853-20243564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               210
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               227-526
               

               Cow position:
               chr4:20616033-20616335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr4:23303588-23303886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:26347363-26347661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr4:26874227-26874525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:30219957-30220249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               213
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:33372089-33372386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr4:34713493-34713199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               214
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:35575844-35575546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:36025591-36025888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:38152578-38152874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:38584558-38584260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               213
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:38864732-38864434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr4:39422276-39421978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:43315975-43316273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:43895814-43896114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               219
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               36, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:48411229-48411527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-526
               

               Cow position:
               chr4:52601779-52601482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               215
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:54695355-54695650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:54757591-54757881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               218
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               227-526
               

               Cow position:
               chr4:55656862-55657159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-527
               

               Cow position:
               chr4:18547413-18547114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               227-528
               

               Cow position:
               chr4:12657977-12657685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               217
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               228-471
               

               Cow position:
               chr4:13920397-13920645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               46, 6
               

               Conread position:
               228-524
               

               Cow position:
               chr4:25595808-25596103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 5
               

               Conread position:
               228-526
               

               Cow position:
               chr4:1237381-1237680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               115, 175
               

               Conread position:
               228-526
               

               Cow position:
               chr4:22849996-22850295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 179
               

               Conread position:
               228-526
               

               Cow position:
               chr4:34044057-34044340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               36, 5
               

               Conread position:
               228-526
               

               Cow position:
               chr4:61242939-61242651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               215
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               37, 5
               

               Conread position:
               228-527
               

               Cow position:
               chr4:25983961-25983660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 149
               

               Conread position:
               229-452
               

               Cow position:
               chr4:28740747-28740522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               35, 7
               

               Conread position:
               229-511
               

               Cow position:
               chr4:31634823-31635115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               36, 243
               

               Conread position:
               229-526
               

               Cow position:
               chr4:61999730-62000026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 104
               

               Conread position:
               230-488
               

               Cow position:
               chr4:61391480-61391735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               193
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               39, 10
               

               Conread position:
               230-527
               

               Cow position:
               chr4:19502081-19502373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 161
               

               Conread position:
               230-528
               

               Cow position:
               chr4:17330511-17330809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               24, 176
               

               Conread position:
               231-358
               

               Cow position:
               chr4:12591491-12591618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               55, 109
               

               Conread position:
               231-379
               

               Cow position:
               chr4:10731939-10731789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               231-383
               

               Cow position:
               chr4:3421366-3421213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               38, 142
               

               Conread position:
               231-385
               

               Cow position:
               chr4:12003943-12003788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               35, 104
               

               Conread position:
               231-389
               

               Cow position:
               chr4:55395203-55395044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               35, 139
               

               Conread position:
               231-398
               

               Cow position:
               chr4:12260332-12260501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               231-407
               

               Cow position:
               chr4:8439723-8439901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               231-407
               

               Cow position:
               chr4:21233362-21233539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               35, 25
               

               Conread position:
               231-408
               

               Cow position:
               chr4:27276823-27277002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               132
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               231-409
               

               Cow position:
               chr4:22138516-22138694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               35, 12
               

               Conread position:
               231-411
               

               Cow position:
               chr4:19438160-19437984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               231-413
               

               Cow position:
               chr4:11924672-11924855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               34, 166
               

               Conread position:
               231-420
               

               Cow position:
               chr4:27997404-27997213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               22, 175
               

               Conread position:
               231-425
               

               Cow position:
               chr4:41866931-41866735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               35, 175
               

               Conread position:
               231-425
               

               Cow position:
               chr4:53999800-53999995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               157
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               35, 89
               

               Conread position:
               231-425
               

               Cow position:
               chr4:55508701-55508892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               35, 9
               

               Conread position:
               231-426
               

               Cow position:
               chr4:9444969-9445165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               38, 175
               

               Conread position:
               231-427
               

               Cow position:
               chr4:561121-560927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               40, 9
               

               Conread position:
               231-428
               

               Cow position:
               chr4:38935098-38934908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               36, 122
               

               Conread position:
               231-429
               

               Cow position:
               chr4:7501606-7501407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               231-430
               

               Cow position:
               chr4:7258707-7258906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               55, 173
               

               Conread position:
               231-430
               

               Cow position:
               chr4:27664622-27664423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               38, 19
               

               Conread position:
               231-431
               

               Cow position:
               chr4:19316259-19316473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               231-431
               

               Cow position:
               chr4:26163253-26163451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               35, 107
               

               Conread position:
               231-431
               

               Cow position:
               chr4:51903322-51903121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               31, 158
               

               Conread position:
               231-431
               

               Cow position:
               chr4:67392678-67392482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               55, 32
               

               Conread position:
               231-440
               

               Cow position:
               chr4:51002872-51002665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               34, 138
               

               Conread position:
               231-441
               

               Cow position:
               chr4:24119191-24119406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               231-442
               

               Cow position:
               chr4:43148124-43147910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               54, 184
               

               Conread position:
               231-442
               

               Cow position:
               chr4:65179415-65179624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               38, 90
               

               Conread position:
               231-447
               

               Cow position:
               chr4:45499825-45500036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               33, 117
               

               Conread position:
               231-448
               

               Cow position:
               chr4:19584424-19584199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               231-453
               

               Cow position:
               chr4:24198073-24198304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               231-453
               

               Cow position:
               chr4:31773191-31772965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               33, 177
               

               Conread position:
               231-453
               

               Cow position:
               chr4:33090027-33090256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               35, 180
               

               Conread position:
               231-453
               

               Cow position:
               chr4:47047460-47047238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               172
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               35, 20
               

               Conread position:
               231-453
               

               Cow position:
               chr4:61897812-61898036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               174
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               231-464
               

               Cow position:
               chr4:49698315-49698076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               33, 105
               

               Conread position:
               231-466
               

               Cow position:
               chr4:1404757-1404525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               38, 23
               

               Conread position:
               231-466
               

               Cow position:
               chr4:23526411-23526164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               35, 236
               

               Conread position:
               231-466
               

               Cow position:
               chr4:26009166-26008931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               177
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               42, 173
               

               Conread position:
               231-466
               

               Cow position:
               chr4:29805660-29805900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               35, 180
               

               Conread position:
               231-466
               

               Cow position:
               chr4:41441285-41441051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               231-466
               

               Cow position:
               chr4:56409902-56409651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               35, 240
               

               Conread position:
               231-470
               

               Cow position:
               chr4:1061207-1061451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               180
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               33, 82
               

               Conread position:
               231-471
               

               Cow position:
               chr4:48499552-48499305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               35, 182
               

               Conread position:
               231-477
               

               Cow position:
               chr4:25806619-25806373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               182
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               35, 75
               

               Conread position:
               231-477
               

               Cow position:
               chr4:54334630-54334865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               55, 109
               

               Conread position:
               231-480
               

               Cow position:
               chr4:38974033-38973785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               177
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               34, 71
               

               Conread position:
               231-482
               

               Cow position:
               chr4:22101547-22101795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               188
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               35, 22
               

               Conread position:
               231-483
               

               Cow position:
               chr4:53125857-53125599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               33, 179
               

               Conread position:
               231-486
               

               Cow position:
               chr4:51850915-51850664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               55, 34
               

               Conread position:
               231-489
               

               Cow position:
               chr4:14812804-14813061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               58, 123
               

               Conread position:
               231-489
               

               Cow position:
               chr4:29036994-29036732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               38, 124
               

               Conread position:
               231-492
               

               Cow position:
               chr4:28836252-28835990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               35, 94
               

               Conread position:
               231-492
               

               Cow position:
               chr4:46526719-46526460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               35, 173
               

               Conread position:
               231-492
               

               Cow position:
               chr4:49814294-49814555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               231-502
               

               Cow position:
               chr4:10039001-10038731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               38, 81
               

               Conread position:
               231-502
               

               Cow position:
               chr4:21588887-21589156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 88
               

               Conread position:
               231-503
               

               Cow position:
               chr4:5777312-5777596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               33, 236
               

               Conread position:
               231-507
               

               Cow position:
               chr4:39009689-39009410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               34, 141
               

               Conread position:
               231-508
               

               Cow position:
               chr4:59871225-59870931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               33, 187
               

               Conread position:
               231-511
               

               Cow position:
               chr4:3133003-3132718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               33, 84
               

               Conread position:
               231-511
               

               Cow position:
               chr4:54260359-54260636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               85, 125
               

               Conread position:
               231-512
               

               Cow position:
               chr4:43370130-43370417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               207
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               34, 94
               

               Conread position:
               231-515
               

               Cow position:
               chr4:3268587-3268871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 174
               

               Conread position:
               231-515
               

               Cow position:
               chr4:9482530-9482812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               55, 32
               

               Conread position:
               231-515
               

               Cow position:
               chr4:54171088-54170809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               204
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               35, 87
               

               Conread position:
               231-516
               

               Cow position:
               chr4:22051747-22052033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 104
               

               Conread position:
               231-517
               

               Cow position:
               chr4:9649747-9649456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               33, 139
               

               Conread position:
               231-519
               

               Cow position:
               chr4:14352961-14353251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 226
               

               Conread position:
               231-519
               

               Cow position:
               chr4:21741691-21741405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               206
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               40, 63
               

               Conread position:
               231-520
               

               Cow position:
               chr4:8760967-8760679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               38, 88
               

               Conread position:
               231-520
               

               Cow position:
               chr4:37169093-37169383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 174
               

               Conread position:
               231-522
               

               Cow position:
               chr4:21064753-21064481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               212
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               35, 75
               

               Conread position:
               231-523
               

               Cow position:
               chr4:19541840-19541551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 20
               

               Conread position:
               231-524
               

               Cow position:
               chr4:6792108-6791808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               214
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               33, 205
               

               Conread position:
               231-524
               

               Cow position:
               chr4:17774871-17775162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 174
               

               Conread position:
               231-524
               

               Cow position:
               chr4:19493240-19492947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 227
               

               Conread position:
               231-524
               

               Cow position:
               chr4:32838800-32839110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               207
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               55, 239
               

               Conread position:
               231-524
               

               Cow position:
               chr4:37703986-37703693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 181
               

               Conread position:
               231-524
               

               Cow position:
               chr4:48152649-48152943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 175
               

               Conread position:
               231-524
               

               Cow position:
               chr4:48409839-48410121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 35
               

               Conread position:
               231-525
               

               Cow position:
               chr4:27540341-27540047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 174
               

               Conread position:
               231-525
               

               Cow position:
               chr4:28151249-28150952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               204
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               38, 22
               

               Conread position:
               231-525
               

               Cow position:
               chr4:31366601-31366301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               33, 127
               

               Conread position:
               231-525
               

               Cow position:
               chr4:33357584-33357292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 175
               

               Conread position:
               231-525
               

               Cow position:
               chr4:61624906-61625205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               216
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               33, 179
               

               Conread position:
               231-526
               

               Cow position:
               chr4:1499428-1499712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               55, 31
               

               Conread position:
               231-526
               

               Cow position:
               chr4:2601878-2601582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 34
               

               Conread position:
               231-526
               

               Cow position:
               chr4:3893450-3893153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               221
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               35, 74
               

               Conread position:
               231-526
               

               Cow position:
               chr4:8558645-8558932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               33, 117
               

               Conread position:
               231-526
               

               Cow position:
               chr4:8704491-8704195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               207
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               35, 181
               

               Conread position:
               231-526
               

               Cow position:
               chr4:9520016-9519722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 120
               

               Conread position:
               231-526
               

               Cow position:
               chr4:10993824-10994117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               215
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               35, 63
               

               Conread position:
               231-526
               

               Cow position:
               chr4:11389859-11390159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               35, 186
               

               Conread position:
               231-526
               

               Cow position:
               chr4:11872192-11872484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 182
               

               Conread position:
               231-526
               

               Cow position:
               chr4:12605206-12605503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               212
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               56, 226
               

               Conread position:
               231-526
               

               Cow position:
               chr4:14229905-14230200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               34, 182
               

               Conread position:
               231-526
               

               Cow position:
               chr4:14919731-14919440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               196
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               52, 30
               

               Conread position:
               231-526
               

               Cow position:
               chr4:17833185-17833465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               205
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               35, 139
               

               Conread position:
               231-526
               

               Cow position:
               chr4:21162415-21162113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               15, 147
               

               Conread position:
               231-526
               

               Cow position:
               chr4:22023422-22023720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               33, 186
               

               Conread position:
               231-526
               

               Cow position:
               chr4:22236755-22237048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 173
               

               Conread position:
               231-526
               

               Cow position:
               chr4:23647123-23647406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               35, 86
               

               Conread position:
               231-526
               

               Cow position:
               chr4:28613541-28613242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               231-526
               

               Cow position:
               chr4:32250170-32249875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               231-526
               

               Cow position:
               chr4:33612930-33613214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 139
               

               Conread position:
               231-526
               

               Cow position:
               chr4:37553324-37553619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 173
               

               Conread position:
               231-526
               

               Cow position:
               chr4:38706235-38706529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 182
               

               Conread position:
               231-526
               

               Cow position:
               chr4:38825595-38825892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               33, 24
               

               Conread position:
               231-526
               

               Cow position:
               chr4:40823810-40824100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               204
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               33, 130
               

               Conread position:
               231-526
               

               Cow position:
               chr4:49409185-49408905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               215
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               35, 104
               

               Conread position:
               231-526
               

               Cow position:
               chr4:50194212-50193919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 155
               

               Conread position:
               231-526
               

               Cow position:
               chr4:54190827-54190532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 173
               

               Conread position:
               231-526
               

               Cow position:
               chr4:54494558-54494265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               213
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               35, 12
               

               Conread position:
               231-526
               

               Cow position:
               chr4:55523022-55522728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 181
               

               Conread position:
               231-526
               

               Cow position:
               chr4:59118434-59118732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               38, 114
               

               Conread position:
               231-526
               

               Cow position:
               chr4:60624867-60625163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               116, 43
               

               Conread position:
               231-526
               

               Cow position:
               chr4:61972755-61973041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               213
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               19, 14
               

               Conread position:
               231-526
               

               Cow position:
               chr4:66901302-66901000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               33, 25
               

               Conread position:
               231-526
               

               Cow position:
               chr4:68362659-68362359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 16
               

               Conread position:
               231-526
               

               Cow position:
               chr4:68944456-68944749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               215
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               231-527
               

               Cow position:
               chr4:3251882-3252171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 91
               

               Conread position:
               231-527
               

               Cow position:
               chr4:9795651-9795936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               40, 53
               

               Conread position:
               231-527
               

               Cow position:
               chr4:9845323-9845032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               33, 179
               

               Conread position:
               231-527
               

               Cow position:
               chr4:16602333-16602629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 118
               

               Conread position:
               231-527
               

               Cow position:
               chr4:33433536-33433827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 126
               

               Conread position:
               231-527
               

               Cow position:
               chr4:36577874-36578169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               211
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               37, 174
               

               Conread position:
               231-527
               

               Cow position:
               chr4:36813110-36812811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               33, 150
               

               Conread position:
               231-527
               

               Cow position:
               chr4:40410635-40410928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 103
               

               Conread position:
               231-527
               

               Cow position:
               chr4:42480905-42480611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               210
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               40, 20
               

               Conread position:
               231-527
               

               Cow position:
               chr4:43840304-43840598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               231-527
               

               Cow position:
               chr4:51740020-51740312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 110
               

               Conread position:
               231-527
               

               Cow position:
               chr4:65464381-65464670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 51
               

               Conread position:
               231-527
               

               Cow position:
               chr4:66918616-66918317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 177
               

               Conread position:
               231-528
               

               Cow position:
               chr4:8674406-8674108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               35, 70
               

               Conread position:
               231-528
               

               Cow position:
               chr4:9136997-9136701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 132
               

               Conread position:
               231-528
               

               Cow position:
               chr4:27337888-27337591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               211
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               231-528
               

               Cow position:
               chr4:27548512-27548817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               33, 188
               

               Conread position:
               231-528
               

               Cow position:
               chr4:28173196-28173492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               35, 82
               

               Conread position:
               232-381
               

               Cow position:
               chr4:53100525-53100377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               34, 72
               

               Conread position:
               232-400
               

               Cow position:
               chr4:33971178-33971346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               37, 24
               

               Conread position:
               232-408
               

               Cow position:
               chr4:351947-351769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               232-425
               

               Cow position:
               chr4:26400676-26400482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               34, 173
               

               Conread position:
               232-466
               

               Cow position:
               chr4:33149554-33149328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               32, 73
               

               Conread position:
               232-481
               

               Cow position:
               chr4:34166247-34166497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               36, 8
               

               Conread position:
               232-500
               

               Cow position:
               chr4:65826147-65826417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 45
               

               Conread position:
               232-502
               

               Cow position:
               chr4:213590-213331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               33, 102
               

               Conread position:
               232-510
               

               Cow position:
               chr4:14742978-14742709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               33, 83
               

               Conread position:
               232-511
               

               Cow position:
               chr4:15668576-15668857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               200
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               33, 87
               

               Conread position:
               232-511
               

               Cow position:
               chr4:37879158-37878867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               208
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               33, 89
               

               Conread position:
               232-517
               

               Cow position:
               chr4:49741200-49740918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               54, 9
               

               Conread position:
               232-523
               

               Cow position:
               chr4:23655713-23655423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 116
               

               Conread position:
               232-525
               

               Cow position:
               chr4:25972618-25972319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               32, 186
               

               Conread position:
               232-526
               

               Cow position:
               chr4:15904820-15904538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               201
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               33, 74
               

               Conread position:
               232-526
               

               Cow position:
               chr4:34171850-34172143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 180
               

               Conread position:
               232-526
               

               Cow position:
               chr4:36755442-36755142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 186
               

               Conread position:
               232-526
               

               Cow position:
               chr4:66173075-66173364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 166
               

               Conread position:
               232-526
               

               Cow position:
               chr4:67444864-67444554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               37, 239
               

               Conread position:
               232-527
               

               Cow position:
               chr4:7806842-7806550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               211
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               54, 72
               

               Conread position:
               232-527
               

               Cow position:
               chr4:22744048-22743767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               216
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               32, 74
               

               Conread position:
               232-527
               

               Cow position:
               chr4:22842069-22841777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 173
               

               Conread position:
               232-527
               

               Cow position:
               chr4:31136472-31136178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 171
               

               Conread position:
               232-527
               

               Cow position:
               chr4:44901941-44901646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 9
               

               Conread position:
               232-528
               

               Cow position:
               chr4:15462588-15462884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 173
               

               Conread position:
               232-528
               

               Cow position:
               chr4:64791604-64791323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               54, 108
               

               Conread position:
               232-528
               

               Cow position:
               chr4:65919341-65919046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 87
               

               Conread position:
               233-419
               

               Cow position:
               chr4:14505612-14505805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               33, 178
               

               Conread position:
               233-425
               

               Cow position:
               chr4:42328681-42328873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               32, 119
               

               Conread position:
               233-450
               

               Cow position:
               chr4:33030225-33030011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               36, 43
               

               Conread position:
               233-466
               

               Cow position:
               chr4:11090962-11091195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               33, 172
               

               Conread position:
               233-486
               

               Cow position:
               chr4:1355797-1356042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               233-489
               

               Cow position:
               chr4:10992481-10992746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               191
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               31, 56
               

               Conread position:
               233-491
               

               Cow position:
               chr4:49176162-49175905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               32, 172
               

               Conread position:
               233-501
               

               Cow position:
               chr4:53822608-53822342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 102
               

               Conread position:
               233-502
               

               Cow position:
               chr4:27287428-27287702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               192
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               32, 227
               

               Conread position:
               233-511
               

               Cow position:
               chr4:17375740-17376010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               32, 96
               

               Conread position:
               233-511
               

               Cow position:
               chr4:28234493-28234771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               197
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               32, 179
               

               Conread position:
               233-519
               

               Cow position:
               chr4:14814245-14813957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 224
               

               Conread position:
               233-525
               

               Cow position:
               chr4:120015-120306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 7
               

               Conread position:
               233-525
               

               Cow position:
               chr4:23273800-23273511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               209
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               32, 21
               

               Conread position:
               233-525
               

               Cow position:
               chr4:41429556-41429848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 179
               

               Conread position:
               233-525
               

               Cow position:
               chr4:46585231-46585523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 179
               

               Conread position:
               233-526
               

               Cow position:
               chr4:359559-359265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 173
               

               Conread position:
               233-526
               

               Cow position:
               chr4:2349076-2349368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 172
               

               Conread position:
               233-526
               

               Cow position:
               chr4:3070539-3070254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               208
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               32, 45
               

               Conread position:
               233-526
               

               Cow position:
               chr4:6034373-6034663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 131
               

               Conread position:
               233-526
               

               Cow position:
               chr4:8377462-8377757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               32, 228
               

               Conread position:
               233-526
               

               Cow position:
               chr4:10044093-10044386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 172
               

               Conread position:
               233-526
               

               Cow position:
               chr4:14142989-14142699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               33, 18
               

               Conread position:
               233-526
               

               Cow position:
               chr4:16364997-16364704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 179
               

               Conread position:
               233-526
               

               Cow position:
               chr4:18255582-18255289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 171
               

               Conread position:
               233-526
               

               Cow position:
               chr4:18602539-18602829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 172
               

               Conread position:
               233-526
               

               Cow position:
               chr4:21553464-21553753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 134
               

               Conread position:
               233-526
               

               Cow position:
               chr4:23149983-23150275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               210
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               32, 172
               

               Conread position:
               233-526
               

               Cow position:
               chr4:33069166-33069459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               209
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               32, 103
               

               Conread position:
               233-526
               

               Cow position:
               chr4:44734293-44733999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 223
               

               Conread position:
               233-526
               

               Cow position:
               chr4:47087367-47087666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               31, 185
               

               Conread position:
               233-526
               

               Cow position:
               chr4:48030533-48030238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 222
               

               Conread position:
               233-526
               

               Cow position:
               chr4:49745346-49745054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 135
               

               Conread position:
               233-526
               

               Cow position:
               chr4:52086821-52086535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               216
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               33, 72
               

               Conread position:
               233-526
               

               Cow position:
               chr4:67651756-67652053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 154
               

               Conread position:
               233-527
               

               Cow position:
               chr4:24002251-24002542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 172
               

               Conread position:
               233-527
               

               Cow position:
               chr4:33497235-33496941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 172
               

               Conread position:
               233-527
               

               Cow position:
               chr4:61673307-61673600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               205
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               32, 179
               

               Conread position:
               233-527
               

               Cow position:
               chr4:64875772-64875477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 223
               

               Conread position:
               233-528
               

               Cow position:
               chr4:17877634-17877338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 102
               

               Conread position:
               233-528
               

               Cow position:
               chr4:27178498-27178204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 155
               

               Conread position:
               234-400
               

               Cow position:
               chr4:14964464-14964300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               32, 91
               

               Conread position:
               234-447
               

               Cow position:
               chr4:19097011-19096800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               166
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               32, 7
               

               Conread position:
               234-451
               

               Cow position:
               chr4:5495717-5495494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               30, 87
               

               Conread position:
               234-458
               

               Cow position:
               chr4:48204919-48205141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               52, 59
               

               Conread position:
               234-469
               

               Cow position:
               chr4:3440111-3439873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               30, 44
               

               Conread position:
               234-469
               

               Cow position:
               chr4:36350527-36350293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-470
               

               Cow position:
               chr4:67394916-67394681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-477
               

               Cow position:
               chr4:11025643-11025897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               32, 148
               

               Conread position:
               234-486
               

               Cow position:
               chr4:17585301-17585560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               181
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               30, 228
               

               Conread position:
               234-489
               

               Cow position:
               chr4:18186726-18186980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               31, 7
               

               Conread position:
               234-500
               

               Cow position:
               chr4:6395762-6395497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               194
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-502
               

               Cow position:
               chr4:53055346-53055617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               32, 176
               

               Conread position:
               234-503
               

               Cow position:
               chr4:44196406-44196139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               30, 82
               

               Conread position:
               234-508
               

               Cow position:
               chr4:1352319-1352598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               190
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               52, 31
               

               Conread position:
               234-514
               

               Cow position:
               chr4:46370242-46370521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 170
               

               Conread position:
               234-515
               

               Cow position:
               chr4:53128527-53128814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               35, 176
               

               Conread position:
               234-518
               

               Cow position:
               chr4:18672898-18672615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-523
               

               Cow position:
               chr4:65198127-65198415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-524
               

               Cow position:
               chr4:62192098-62192386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               52, 43
               

               Conread position:
               234-525
               

               Cow position:
               chr4:3446523-3446813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:6232032-6231742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:6547016-6547305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:7138692-7138982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:7260137-7260427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:9357912-9357622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               57, 170
               

               Conread position:
               234-525
               

               Cow position:
               chr4:10425151-10424861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               209
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:15618368-15618078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:17235690-17235403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               206
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:18519445-18519136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               211
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               31, 239
               

               Conread position:
               234-525
               

               Cow position:
               chr4:28855784-28855494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               209
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:29559855-29560145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:30475054-30474764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               209
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               32, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:30541835-30541545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:31484040-31484330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:31774645-31774935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:33146532-33146241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:34644063-34644353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:38834440-38834730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:48736552-48736268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:50018875-50019163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:54812216-54811926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               207
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:58292403-58292114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:58576993-58577283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:58748319-58748029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:59838974-59838684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:62014284-62014573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:62221691-62221980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               210
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-525
               

               Cow position:
               chr4:64156402-64156112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-526
               

               Cow position:
               chr4:9041621-9041330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-526
               

               Cow position:
               chr4:17032827-17033118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               204
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-526
               

               Cow position:
               chr4:18335273-18335564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               205
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               31, 9
               

               Conread position:
               234-526
               

               Cow position:
               chr4:22073594-22073877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               212
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               32, 44
               

               Conread position:
               234-526
               

               Cow position:
               chr4:23853920-23853624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 27
               

               Conread position:
               234-526
               

               Cow position:
               chr4:26540956-26540646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               30, 16
               

               Conread position:
               234-526
               

               Cow position:
               chr4:34181090-34181380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               201
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               52, 31
               

               Conread position:
               234-526
               

               Cow position:
               chr4:38309418-38309713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               30, 181
               

               Conread position:
               234-526
               

               Cow position:
               chr4:40218492-40218221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               205
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-526
               

               Cow position:
               chr4:50978966-50978672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               212
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               32, 13
               

               Conread position:
               234-526
               

               Cow position:
               chr4:63431145-63430854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               209
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-526
               

               Cow position:
               chr4:68470533-68470824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               207
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               234-527
               

               Cow position:
               chr4:14152790-14152505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               214
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               35, 163
               

               Conread position:
               234-527
               

               Cow position:
               chr4:56514931-56515228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               212
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               35, 55
               

               Conread position:
               234-528
               

               Cow position:
               chr4:10055929-10055633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               211
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               7, 101
               

               Conread position:
               235-384
               

               Cow position:
               chr4:19497531-19497682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               235-388
               

               Cow position:
               chr4:21257410-21257565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               235-394
               

               Cow position:
               chr4:1014786-1014625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               118
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               235-403
               

               Cow position:
               chr4:9815633-9815804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               235-425
               

               Cow position:
               chr4:11922006-11922197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               31, 70
               

               Conread position:
               235-427
               

               Cow position:
               chr4:67706531-67706338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               31, 168
               

               Conread position:
               235-431
               

               Cow position:
               chr4:20327996-20328194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               164
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 171
               

               Conread position:
               235-438
               

               Cow position:
               chr4:57721555-57721351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               31, 170
               
UCSC Genome Browser
               Conread position:
               235-451
               

               Cow position:
               chr4:45114910-45115135 (view  custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               31, 177
               
UCSC Genome Browser
               
               
               
Conread position: 235-453

               
               
               
Cow position: chr4:7430038-7429819 (view  custom track)

               
               
               
Alignm length: 223

               
               
               
Alignm identity: 170

               
               
               
Alignm E-value: 3e-40

               
               
               
Alignm gaps (pig, cow): 31, 170
UCSC Genome Browser
               
               
               
Conread position: 235-453

               
               
               
Cow position: chr4:22861200-22861425 (view  custom track)

               
               
               
Alignm length: 228

               
               
               
Alignm identity: 170

               
               
               
Alignm E-value: 2e-35

               
               
               
Alignm gaps (pig, cow): 6, 176

               
               
               Conread position:235-468
               
               
               Cow position:chr4:18099254-18099486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):177, 50

               
               
               Conread position:235-484
               
               
               Cow position:chr4:21602771-21603019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):30, 5

               
               
               Conread position:235-498
               
               
               Cow position:chr4:5874671-5874407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):29, 171

               
               
               Conread position:235-499
               
               
               Cow position:chr4:5610353-5610617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 170

               
               
               Conread position:235-500
               
               
               Cow position:chr4:66112358-66112622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:235-506
               
               
               Cow position:chr4:28377930-28378206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:235-508
               
               
               Cow position:chr4:10837645-10837918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):29, 151

               
               
               Conread position:235-512
               
               
               Cow position:chr4:25369835-25369547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):29, 226

               
               
               Conread position:235-513
               
               
               Cow position:chr4:16091902-16092175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:235-518
               
               
               Cow position:chr4:11218534-11218254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):34, 99

               
               
               Conread position:235-523
               
               
               Cow position:chr4:12128093-12128366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):123, 36

               
               
               Conread position:235-524
               
               
               Cow position:chr4:4127347-4127064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:235-524
               
               
               Cow position:chr4:18974156-18973877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):31, 123

               
               
               Conread position:235-525
               
               
               Cow position:chr4:18684404-18684693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 5

               
               
               Conread position:235-525
               
               
               Cow position:chr4:19025698-19025988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 5

               
               
               Conread position:235-525
               
               
               Cow position:chr4:34223608-34223318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 170

               
               
               Conread position:235-526
               
               
               Cow position:chr4:1436000-1436290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 5

               
               
               Conread position:235-526
               
               
               Cow position:chr4:10016866-10017154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):29, 53

               
               
               Conread position:235-526
               
               
               Cow position:chr4:11201536-11201246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):31, 170

               
               
               Conread position:235-526
               
               
               Cow position:chr4:13142808-13143096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 105

               
               
               Conread position:235-526
               
               
               Cow position:chr4:13327238-13327525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):31, 170

               
               
               Conread position:235-526
               
               
               Cow position:chr4:13589810-13589520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:235-526
               
               
               Cow position:chr4:13877915-13877621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):29, 176

               
               
               Conread position:235-526
               
               
               Cow position:chr4:16831874-16832171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):51, 30

               
               
               Conread position:235-526
               
               
               Cow position:chr4:19421050-19420753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 42

               
               
               Conread position:235-526
               
               
               Cow position:chr4:27560772-27560475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):29, 183

               
               
               Conread position:235-526
               
               
               Cow position:chr4:28399688-28399979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):107, 31

               
               
               Conread position:235-526
               
               
               Cow position:chr4:29035634-29035344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 210

               
               
               Conread position:235-526
               
               
               Cow position:chr4:30574172-30573882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 170

               
               
               Conread position:235-526
               
               
               Cow position:chr4:41186649-41186945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 221

               
               
               Conread position:235-526
               
               
               Cow position:chr4:44449870-44450156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 170

               
               
               Conread position:235-526
               
               
               Cow position:chr4:55271040-55271330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):29, 147

               
               
               Conread position:235-526
               
               
               Cow position:chr4:59888887-59889181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:235-527
               
               
               Cow position:chr4:2609957-2609663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):33, 9

               
               
               Conread position:235-527
               
               
               Cow position:chr4:4185837-4185549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):34, 170

               
               
               Conread position:235-527
               
               
               Cow position:chr4:36893072-36892772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 178

               
               
               Conread position:235-527
               
               
               Cow position:chr4:54111272-54110992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 43

               
               
               Conread position:235-528
               
               
               Cow position:chr4:19256040-19255745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 222

               
               
               Conread position:235-528
               
               
               Cow position:chr4:25879113-25878821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 70

               
               
               Conread position:235-528
               
               
               Cow position:chr4:46708811-46709102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 169

               
               
               Conread position:236-434
               
               
               Cow position:chr4:28711828-28711632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:236-519
               
               
               Cow position:chr4:47752961-47752683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):29, 155

               
               
               Conread position:236-526
               
               
               Cow position:chr4:12018275-12017987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):29, 5

               
               
               Conread position:237-423
               
               
               Cow position:chr4:56852614-56852426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 169

               
               
               Conread position:237-431
               
               
               Cow position:chr4:42864093-42863891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 121

               
               
               Conread position:237-525
               
               
               Cow position:chr4:15056475-15056187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 175

               
               
               Conread position:237-526
               
               
               Cow position:chr4:10885307-10885020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):28, 168

               
               
               Conread position:237-526
               
               
               Cow position:chr4:10968648-10968939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 220

               
               
               Conread position:237-526
               
               
               Cow position:chr4:23451327-23451612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:237-526
               
               
               Cow position:chr4:40576192-40576484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 174

               
               
               Conread position:240-528
               
               
               Cow position:chr4:30960232-30959942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):24, 165

               
               
               Conread position:241-438
               
               
               Cow position:chr4:38999144-38998945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):23, 165

               
               
               Conread position:241-486
               
               
               Cow position:chr4:27348903-27348653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:241-501
               
               
               Cow position:chr4:23578660-23578400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):28, 66

               
               
               Conread position:241-506
               
               
               Cow position:chr4:12670864-12670596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 53

               
               
               Conread position:241-526
               
               
               Cow position:chr4:1027555-1027843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 168

               
               
               Conread position:241-526
               
               
               Cow position:chr4:21392087-21392392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):25, 235

               
               
               Conread position:242-526
               
               
               Cow position:chr4:33366519-33366800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 86

               
               
               Conread position:242-526
               
               
               Cow position:chr4:65431877-65431604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):24, 43

               
               
               Conread position:243-451
               
               
               Cow position:chr4:5631580-5631788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):23, 161

               
               
               Conread position:243-487
               
               
               Cow position:chr4:66127597-66127847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 130

               
               
               Conread position:243-511
               
               
               Cow position:chr4:49386935-49387207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 73

               
               
               Conread position:243-526
               
               
               Cow position:chr4:59333261-59333550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):26, 176

               
               
               Conread position:243-527
               
               
               Cow position:chr4:5979083-5979368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:243-527
               
               
               Cow position:chr4:25226638-25226355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):23, 161

               
               
               Conread position:244-439
               
               
               Cow position:chr4:17474129-17473934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:244-520
               
               
               Cow position:chr4:63096939-63096663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):22, 213

               
               
               Conread position:244-526
               
               
               Cow position:chr4:65842043-65842336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):25, 201

               
               
               Conread position:244-528
               
               
               Cow position:chr4:14936362-14936079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):92, 61

               
               
               Conread position:245-452
               
               
               Cow position:chr4:12464552-12464346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):24, 73

               
               
               Conread position:245-525
               
               
               Cow position:chr4:533953-533674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 168

               
               
               Conread position:245-526
               
               
               Cow position:chr4:11309309-11309028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 160

               
               
               Conread position:245-527
               
               
               Cow position:chr4:3850263-3849977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 83

               
               
               Conread position:245-527
               
               
               Cow position:chr4:27292254-27292527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):41, 148

               
               
               Conread position:246-519
               
               
               Cow position:chr4:64072643-64072922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):25, 165

               
               
               Conread position:246-526
               
               
               Cow position:chr4:37691718-37691997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 157

               
               
               Conread position:249-526
               
               
               Cow position:chr4:1046815-1047078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 70

               
               
               Conread position:249-526
               
               
               Cow position:chr4:3129522-3129238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):16, 163

               
               
               Conread position:249-526
               
               
               Cow position:chr4:36489988-36490267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):16, 84

               
               
               Conread position:249-526
               
               
               Cow position:chr4:43898238-43898513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):17, 85

               
               
               Conread position:249-526
               
               
               Cow position:chr4:54974636-54974362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:251-396
               
               
               Cow position:chr4:16799488-16799634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):15, 116

               
               
               Conread position:251-527
               
               
               Cow position:chr4:9713610-9713329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):14, 5

               
               
               Conread position:251-528
               
               
               Cow position:chr4:14939836-14939561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 140

               
               
               Conread position:252-497
               
               
               Cow position:chr4:35940296-35940543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):17, 153

               
               
               Conread position:255-399
               
               
               Cow position:chr4:68783946-68783800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:255-523
               
               
               Cow position:chr4:4850995-4850727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):10, 157

               
               
               Conread position:255-523
               
               
               Cow position:chr4:44451054-44450778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):31, 10

               
               
               Conread position:255-526
               
               
               Cow position:chr4:1926981-1927252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):10, 157

               
               
               Conread position:255-526
               
               
               Cow position:chr4:16966666-16966925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:255-526
               
               
               Cow position:chr4:39458322-39458052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 150

               
               
               Conread position:255-528
               
               
               Cow position:chr4:23847513-23847779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):11, 152

               
               
               Conread position:256-511
               
               
               Cow position:chr4:61650902-61651155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:257-526
               
               
               Cow position:chr4:6630651-6630925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):12, 155

               
               
               Conread position:257-528
               
               
               Cow position:chr4:58834705-58834981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):7, 154

               
               
               Conread position:263-400
               
               
               Cow position:chr4:19597996-19598134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:263-511
               
               
               Cow position:chr4:21503323-21503576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 146

               
               
               Conread position:263-515
               
               
               Cow position:chr4:8068527-8068270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 132

               
               
               Conread position:263-526
               
               
               Cow position:chr4:19007157-19006890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 106

               
               
               Conread position:263-526
               
               
               Cow position:chr4:22366817-22366555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 141

               
               
               Conread position:263-526
               
               
               Cow position:chr4:51783858-51783598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):23, 79

               
               
               Conread position:263-526
               
               
               Cow position:chr4:67435779-67435514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):23, 150

               
               
               Conread position:263-527
               
               
               Cow position:chr4:2141141-2140883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 52

               
               
               Conread position:264-525
               
               
               Cow position:chr4:4923627-4923888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):22, 148

               
               
               Conread position:264-525
               
               
               Cow position:chr4:27655732-27655471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):22, 148

               
               
               Conread position:264-527
               
               
               Cow position:chr4:4413529-4413791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:267-453
               
               
               Cow position:chr4:37312564-37312373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):68, 64

               
               
               Conread position:267-526
               
               
               Cow position:chr4:18106238-18106497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:267-528
               
               
               Cow position:chr4:30690421-30690170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):17, 137

               
               
               Conread position:269-524
               
               
               Cow position:chr4:52632747-52633002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 142

               
               
               Conread position:272-477
               
               
               Cow position:chr4:4736645-4736435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):14, 138

               
               
               Conread position:277-528
               
               
               Cow position:chr4:37828144-37828410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):10, 140

               
               
               Conread position:285-454
               
               
               Cow position:chr4:39002417-39002250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:285-466
               
               
               Cow position:chr4:570261-570083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:285-485
               
               
               Cow position:chr4:46668249-46668050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):118, 139

               
               
               Conread position:285-502
               
               
               Cow position:chr4:5525687-5525472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:285-511
               
               
               Cow position:chr4:10411827-10411602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 119

               
               
               Conread position:285-511
               
               
               Cow position:chr4:30295566-30295342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:285-518
               
               
               Cow position:chr4:29213527-29213296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:285-519
               
               
               Cow position:chr4:961986-962214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):62, 47

               
               
               Conread position:285-523
               
               
               Cow position:chr4:6265614-6265849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr4:3170940-3170702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr4:19585634-19585872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:285-526
               
               
               Cow position:chr4:16062872-16062633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:285-526
               
               
               Cow position:chr4:22354574-22354333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:285-526
               
               
               Cow position:chr4:22905304-22905056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 125

               
               
               Conread position:286-488
               
               
               Cow position:chr4:58485033-58484830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):186, 110

               
               
               Conread position:286-515
               
               
               Cow position:chr4:2121729-2121961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:286-526
               
               
               Cow position:chr4:35260768-35261004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):97, 118

               
               
               Conread position:286-526
               
               
               Cow position:chr4:41097576-41097350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:287-526
               
               
               Cow position:chr4:53545704-53545467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:288-526
               
               
               Cow position:chr4:22724818-22724579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):59, 121

               
               
               Conread position:291-517
               
               
               Cow position:chr4:20803416-20803640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:292-508
               
               
               Cow position:chr4:36815744-36815524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):55, 124

               
               
               Conread position:292-526
               
               
               Cow position:chr4:10037070-10036839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):186, 65

               
               
               Conread position:296-523
               
               
               Cow position:chr4:24178867-24179092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:297-527
               
               
               Cow position:chr4:18845400-18845172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:298-526
               
               
               Cow position:chr4:14164395-14164169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:302-527
               
               
               Cow position:chr4:4085775-4085996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:303-526
               
               
               Cow position:chr4:19957631-19957410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:307-526
               
               
               Cow position:chr4:26469070-26468846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 110

               
               
               Conread position:307-526
               
               
               Cow position:chr4:31561641-31561855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:309-528
               
               
               Cow position:chr4:17112302-17112510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):201, 70

               
               
               Conread position:314-526
               
               
               Cow position:chr4:8134214-8134424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:316-511
               
               
               Cow position:chr4:63265852-63265659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:316-525
               
               
               Cow position:chr4:45499736-45499538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:317-411
               
               
               Cow position:chr4:61215445-61215352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:317-431
               
               
               Cow position:chr4:64662427-64662540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:317-465
               
               
               Cow position:chr4:481496-481640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:317-517
               
               
               Cow position:chr4:65168585-65168785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 99

               
               
               Conread position:317-527
               
               
               Cow position:chr4:19744566-19744358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:318-523
               
               
               Cow position:chr4:40415018-40415220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:319-525
               
               
               Cow position:chr4:7035826-7035627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:319-525
               
               
               Cow position:chr4:45297987-45297783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:319-526
               
               
               Cow position:chr4:8799990-8799786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:319-526
               
               
               Cow position:chr4:65891646-65891442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:319-528
               
               
               Cow position:chr4:25735117-25734903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):27, 97

               
               
               Conread position:321-517
               
               
               Cow position:chr4:2681010-2680816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:321-526
               
               
               Cow position:chr4:19237648-19237449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:322-527
               
               
               Cow position:chr4:1365610-1365813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):18, 53

               
               
               Conread position:325-526
               
               
               Cow position:chr4:12413373-12413571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:325-526
               
               
               Cow position:chr4:21844713-21844515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:330-527
               
               
               Cow position:chr4:22013849-22014042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:333-524
               
               
               Cow position:chr4:52980780-52980591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:335-526
               
               
               Cow position:chr4:41602476-41602292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:335-526
               
               
               Cow position:chr4:62570263-62570074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:335-527
               
               
               Cow position:chr4:11107518-11107709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:340-491
               
               
               Cow position:chr4:65208364-65208513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:340-525
               
               
               Cow position:chr4:5231234-5231417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:340-526
               
               
               Cow position:chr4:365516-365697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:341-466
               
               
               Cow position:chr4:6166731-6166853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:341-490
               
               
               Cow position:chr4:48784427-48784576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):126, 11

               
               
               Conread position:341-526
               
               
               Cow position:chr4:42278641-42278816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:347-525
               
               
               Cow position:chr4:61731959-61731780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):77, 63

               
               
               Conread position:348-526
               
               
               Cow position:chr4:18489770-18489945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):125, 7

               
               
               Conread position:349-526
               
               
               Cow position:chr4:57988301-57988126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:352-515
               
               
               Cow position:chr4:25352070-25352230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:352-526
               
               
               Cow position:chr4:22547499-22547668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:352-527
               
               
               Cow position:chr4:17124752-17124925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:353-527
               
               
               Cow position:chr4:44957204-44957377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:353-528
               
               
               Cow position:chr4:19141912-19141740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:354-525
               
               
               Cow position:chr4:12955914-12956083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:357-525
               
               
               Cow position:chr4:18282118-18281952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:358-524
               
               
               Cow position:chr4:25906812-25906977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:361-526
               
               
               Cow position:chr4:5461409-5461569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:363-525
               
               
               Cow position:chr4:35144001-35144161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:365-525
               
               
               Cow position:chr4:60224337-60224494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:366-526
               
               
               Cow position:chr4:12455656-12455498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:366-526
               
               
               Cow position:chr4:13255358-13255200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:367-525
               
               
               Cow position:chr4:14684750-14684595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:369-526
               
               
               Cow position:chr4:15873119-15873270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:374-527
               
               
               Cow position:chr4:68387397-68387252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:375-526
               
               
               Cow position:chr4:38701195-38701046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:377-526
               
               
               Cow position:chr4:3450328-3450181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:380-525
               
               
               Cow position:chr4:20656539-20656681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:383-518
               
               
               Cow position:chr4:22335186-22335052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:386-525
               
               
               Cow position:chr4:10403193-10403331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:390-525
               
               
               Cow position:chr4:26548980-26548847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:391-522
               
               
               Cow position:chr4:19048994-19049123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:392-525
               
               
               Cow position:chr4:25045914-25045785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:393-525
               
               
               Cow position:chr4:221864-221994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:393-526
               
               
               Cow position:chr4:8414920-8415053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 63

               
               
               Conread position:397-526
               
               
               Cow position:chr4:21251204-21251334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 60

               
               
               Conread position:397-527
               
               
               Cow position:chr4:1461906-1462034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:398-519
               
               
               Cow position:chr4:43476290-43476410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:405-523
               
               
               Cow position:chr4:15802336-15802453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:412-525
               
               
               Cow position:chr4:10397559-10397447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 0
Show alignments to all cow chromosomes.
Conread position:	140-525
Cow position:	chr4:37787047-37786685 (view UCSC Genome Browser custom track)
Alignm length:	388
Alignm identity:	275
Alignm E-value:	0
Alignm gaps (pig, cow):	126, 26
Conread position:	142-526
Cow position:	chr4:27533032-27533427 (view UCSC Genome Browser custom track)
Alignm length:	399
Alignm identity:	263
Alignm E-value:	2e-37
Alignm gaps (pig, cow):	53, 13
Conread position:	145-360
Cow position:	chr4:3283674-3283882 (view UCSC Genome Browser custom track)
Alignm length:	218
Alignm identity:	160
Alignm E-value:	3e-31
Alignm gaps (pig, cow):	124, 21
Conread position:	145-421
Cow position:	chr4:46529208-46529501 (view UCSC Genome Browser custom track)
Alignm length:	295
Alignm identity:	212
Alignm E-value:	3e-40
Alignm gaps (pig, cow):	67, 276
Conread position:	145-491
Cow position:	chr4:49885527-49885879 (view UCSC Genome Browser custom track)
Alignm length:	364
Alignm identity:	244
Alignm E-value:	3e-30
Alignm gaps (pig, cow):	119, 21
Conread position:	145-508
Cow position:	chr4:66547978-66548347 (view UCSC Genome Browser custom track)
Alignm length:	373
Alignm identity:	266
Alignm E-value:	0
Alignm gaps (pig, cow):	43, 21
Conread position:	145-526
Cow position:	chr4:31348419-31348787 (view UCSC Genome Browser custom track)
Alignm length:	386
Alignm identity:	273
Alignm E-value:	0
Alignm gaps (pig, cow):	121, 24
Conread position:	145-527
Cow position:	chr4:20299045-20298657 (view UCSC Genome Browser custom track)
Alignm length:	391
Alignm identity:	309
Alignm E-value:	0
Alignm gaps (pig, cow):	43, 266
Conread position:	147-444
Cow position:	chr4:11021877-11022173 (view UCSC Genome Browser custom track)
Alignm length:	304
Alignm identity:	209
Alignm E-value:	1e-33
Alignm gaps (pig, cow):	117, 63
Conread position:	149-518
Cow position:	chr4:31175069-31174688 (view UCSC Genome Browser custom track)
Alignm length:	386
Alignm identity:	258
Alignm E-value:	5e-36
Alignm gaps (pig, cow):	56, 20
Conread position:	149-526
Cow position:	chr4:24415058-24414670 (view UCSC Genome Browser custom track)
Alignm length:	393
Alignm identity:	274
Alignm E-value:	0
Alignm gaps (pig, cow):	17, 96
Conread position:	156-400
Cow position:	chr4:57147075-57146828 (view UCSC Genome Browser custom track)
Alignm length:	250
Alignm identity:	178
Alignm E-value:	5e-35
Alignm gaps (pig, cow):	108, 71
Conread position:	165-450
Cow position:	chr4:36724771-36724486 (view UCSC Genome Browser custom track)
Alignm length:	290
Alignm identity:	201
Alignm E-value:	6e-37
Alignm gaps (pig, cow):	46, 34
Conread position:	179-526
Cow position:	chr4:43762356-43762009 (view UCSC Genome Browser custom track)
Alignm length:	356
Alignm identity:	233
Alignm E-value:	3e-30
Alignm gaps (pig, cow):	109, 61
Conread position:	185-405
Cow position:	chr4:35981693-35981470 (view UCSC Genome Browser custom track)
Alignm length:	226
Alignm identity:	159
Alignm E-value:	7e-28
Alignm gaps (pig, cow):	40, 75
Conread position:	190-422
Cow position:	chr4:46596932-46596702 (view UCSC Genome Browser custom track)
Alignm length:	237
Alignm identity:	164
Alignm E-value:	5e-25
Alignm gaps (pig, cow):	76, 16
Conread position:	198-435
Cow position:	chr4:19410255-19410007 (view UCSC Genome Browser custom track)
Alignm length:	251
Alignm identity:	180
Alignm E-value:	3e-30
Alignm gaps (pig, cow):	5, 19
Conread position:	199-527
Cow position:	chr4:67408245-67407912 (view UCSC Genome Browser custom track)
Alignm length:	338
Alignm identity:	249
Alignm E-value:	0
Alignm gaps (pig, cow):	29, 42
Conread position:	204-528
Cow position:	chr4:58948205-58948550 (view UCSC Genome Browser custom track)
Alignm length:	350
Alignm identity:	245
Alignm E-value:	7e-38
Alignm gaps (pig, cow):	24, 31
Conread position:	206-399
Cow position:	chr4:14131247-14131055 (view UCSC Genome Browser custom track)
Alignm length:	196
Alignm identity:	139
Alignm E-value:	5e-25
Alignm gaps (pig, cow):	63, 17