Cow genome map

Conread name: Ss1.1-Spl1-SPL010005A09.5

Conread position: 807-1080
Cow position: chr1:3750528-3750252 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 78, 122

Conread position: 821-1074
Cow position: chr1:39251612-39251337 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 20, 111

Conread position: 825-992
Cow position: chr1:45979258-45979083 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 58, 104

Conread position: 826-1079
Cow position: chr1:101966746-101967001 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 188
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 57, 16

Conread position: 828-1076
Cow position: chr1:85848-85591 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 197
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 27, 160

Conread position: 829-1080
Cow position: chr1:25885489-25885744 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 191
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 11, 100

Conread position: 830-1055
Cow position: chr1:11878573-11878807 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 51, 98

Conread position: 830-1058
Cow position: chr1:81370865-81371098 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 16, 96

Conread position: 830-1080
Cow position: chr1:40222216-40222450 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 24, 51

Conread position: 831-1022
Cow position: chr1:76779840-76780027 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 11, 57

Conread position: 831-1040
Cow position: chr1:80329345-80329562 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 172
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 17, 93

Conread position: 832-1076
Cow position: chr1:52207596-52207350 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 188
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 53, 13

Conread position: 834-1010
Cow position: chr1:78885253-78885436 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 95

Conread position: 834-1080
Cow position: chr1:62041975-62041737 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 192
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 51, 11

Conread position: 841-1080
Cow position: chr1:82572644-82572888 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 78

Conread position: 843-1038
Cow position: chr1:22496144-22495944 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 34, 10

Conread position: 843-1061
Cow position: chr1:59911179-59910953 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 172
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 42, 28

Conread position: 843-1076
Cow position: chr1:34893171-34892926 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 42, 10

Conread position: 843-1076
Cow position: chr1:81293072-81292838 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 39, 28

Conread position: 844-1076
Cow position: chr1:61242316-61242076 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 178
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 41, 84

Conread position: 845-975
Cow position: chr1:53568232-53568093 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 40, 83

Conread position: 845-992
Cow position: chr1:72117196-72117340 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 78

Conread position: 845-1032
Cow position: chr1:14559957-14560148 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 38, 83

Conread position: 845-1076
Cow position: chr1:63134510-63134283 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 173
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 83

Conread position: 845-1076
Cow position: chr1:88017235-88017477 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 191
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 40, 83

Conread position: 845-1080
Cow position: chr1:18223280-18223512 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 177
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 40, 83

Conread position: 845-1080
Cow position: chr1:101884205-101883967 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 187
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 37, 31

Conread position: 846-1054
Cow position: chr1:3746696-3746483 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 172
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 34, 82

Conread position: 847-1080
Cow position: chr1:64098685-64098929 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 194
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 10, 82

Conread position: 848-1080
Cow position: chr1:40419867-40420105 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 184
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 37, 8

Conread position: 849-1040
Cow position: chr1:20135876-20135688 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 66

Conread position: 854-1080
Cow position: chr1:65155188-65155423 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 74

Conread position: 858-1054
Cow position: chr1:28407936-28408132 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 63, 27

Conread position: 862-1080
Cow position: chr1:37739226-37739435 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 168
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 161, 18

Conread position: 880-1037
Cow position: chr1:54365064-54365221 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 143, 38

Conread position: 880-1053
Cow position: chr1:68332646-68332816 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 140
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 143, 38

Conread position: 880-1059
Cow position: chr1:8726156-8726336 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 126, 39

Conread position: 880-1074
Cow position: chr1:37432933-37432739 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 129, 38

Conread position: 880-1076
Cow position: chr1:77755160-77755363 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 156
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 114, 38

Conread position: 880-1080
Cow position: chr1:39244000-39244205 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 163
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 143, 39

Conread position: 885-1032
Cow position: chr1:71272566-71272429 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 885-1055
Cow position: chr1:6865864-6866033 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 34, 0

Conread position: 885-1058
Cow position: chr1:64479418-64479585 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 136
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 139, 36

Conread position: 885-1059
Cow position: chr1:31951904-31951733 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 33, 122

Conread position: 885-1079
Cow position: chr1:41092625-41092815 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 138, 33

Conread position: 885-1080
Cow position: chr1:11831856-11831671 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 138, 33

Conread position: 885-1080
Cow position: chr1:64745206-64745395 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 154
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 135, 35

Conread position: 885-1080
Cow position: chr1:71555253-71555454 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 161
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 138, 33

Conread position: 886-1076
Cow position: chr1:85409321-85409509 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 151
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 138, 32

Conread position: 886-1080
Cow position: chr1:22072189-22072002 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 130, 32

Conread position: 886-1080
Cow position: chr1:49728426-49728233 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 157
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 138, 32

Conread position: 887-1010
Cow position: chr1:71086273-71086152 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 103
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 0

Conread position: 888-986
Cow position: chr1:69062523-69062426 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 889-1080
Cow position: chr1:74713997-74713815 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 153
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 133, 30

Conread position: 895-1074
Cow position: chr1:100132417-100132233 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 149
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 101, 23

Conread position: 897-1022
Cow position: chr1:78752472-78752595 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 917-1079
Cow position: chr1:92550599-92550762 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 107, 24

Conread position: 947-1069
Cow position: chr1:87914470-87914591 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 107
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 76, 56

Conread position: 953-1076
Cow position: chr1:90370466-90370594 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 7, 0

Show alignments to all cow chromosomes.