Cow genome map

Conread name: Ss1.1-Spl1-SPL010005A09.5

Conread position: 825-1059
Cow position: chr11:30660897-30660647 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 187
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 15, 106

Conread position: 826-1022
Cow position: chr11:15374378-15374183 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 160
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 59, 19

Conread position: 827-1073
Cow position: chr11:17053845-17054095 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 52, 27

Conread position: 829-1008
Cow position: chr11:67960910-67960735 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 829-1080
Cow position: chr11:18153655-18153906 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 187
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 26, 11

Conread position: 831-1076
Cow position: chr11:54204241-54204479 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 184
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 50, 12

Conread position: 831-1080
Cow position: chr11:57062438-57062204 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 188
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 192, 62

Conread position: 833-1040
Cow position: chr11:9192564-9192756 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 157
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 190, 36

Conread position: 833-1058
Cow position: chr11:38113856-38114082 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 16, 85

Conread position: 833-1071
Cow position: chr11:55120063-55119817 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 194
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 18, 32

Conread position: 833-1080
Cow position: chr11:22851634-22851380 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 93

Conread position: 834-1071
Cow position: chr11:64101645-64101395 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 94

Conread position: 834-1076
Cow position: chr11:34398072-34397822 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 51, 19

Conread position: 837-1080
Cow position: chr11:25807146-25807397 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 91

Conread position: 838-1076
Cow position: chr11:57752789-57753035 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 186
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 46, 92

Conread position: 843-1066
Cow position: chr11:81987551-81987759 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 174
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 98, 10

Conread position: 843-1079
Cow position: chr11:29785693-29785456 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 60

Conread position: 843-1080
Cow position: chr11:12065275-12065050 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 182
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 40, 57

Conread position: 843-1080
Cow position: chr11:15885878-15885639 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 183
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 22, 81

Conread position: 843-1080
Cow position: chr11:74171034-74171270 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 185
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 40, 81

Conread position: 845-985
Cow position: chr11:20998726-20998570 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 845-989
Cow position: chr11:80780705-80780553 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 40, 60

Conread position: 845-1001
Cow position: chr11:34025114-34024958 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 40, 80

Conread position: 845-1019
Cow position: chr11:16363810-16363993 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 152
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 40, 107

Conread position: 845-1054
Cow position: chr11:38009436-38009643 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 83

Conread position: 845-1062
Cow position: chr11:27816937-27817159 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 172
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 40, 80

Conread position: 845-1074
Cow position: chr11:21909551-21909789 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 190
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 36, 84

Conread position: 845-1076
Cow position: chr11:77762939-77763168 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 36, 85

Conread position: 845-1080
Cow position: chr11:18452571-18452802 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 83

Conread position: 845-1080
Cow position: chr11:43855648-43855890 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 183
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 11, 56

Conread position: 845-1080
Cow position: chr11:44064468-44064221 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 77

Conread position: 845-1080
Cow position: chr11:87168204-87168432 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 181
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 40, 72

Conread position: 846-1076
Cow position: chr11:43831234-43831462 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 147, 39

Conread position: 846-1080
Cow position: chr11:5220855-5221087 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 178
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 39, 67

Conread position: 846-1080
Cow position: chr11:24008675-24008436 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 39, 54

Conread position: 846-1080
Cow position: chr11:35284670-35284442 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 174
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 25, 76

Conread position: 847-1080
Cow position: chr11:19567609-19567380 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 60

Conread position: 855-1080
Cow position: chr11:39830665-39830883 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 30, 67

Conread position: 857-1073
Cow position: chr11:69491980-69491765 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 168
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 24, 68

Conread position: 863-1076
Cow position: chr11:8087607-8087813 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 56

Conread position: 878-1079
Cow position: chr11:40574233-40574429 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 160
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 143, 41

Conread position: 879-1033
Cow position: chr11:15106263-15106418 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 131, 39

Conread position: 879-1062
Cow position: chr11:34265964-34265786 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 145, 39

Conread position: 879-1076
Cow position: chr11:34304004-34303812 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 157
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 145, 39

Conread position: 880-999
Cow position: chr11:25972409-25972526 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 100
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 36, 0

Conread position: 880-1022
Cow position: chr11:3261245-3261114 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 880-1025
Cow position: chr11:39166721-39166577 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 95, 39

Conread position: 880-1054
Cow position: chr11:27610966-27610794 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 75, 38

Conread position: 880-1076
Cow position: chr11:77772160-77772346 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 880-1080
Cow position: chr11:1774348-1774549 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 159
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 143, 38

Conread position: 880-1080
Cow position: chr11:10877789-10877593 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 152
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 145, 38

Conread position: 880-1080
Cow position: chr11:70605916-70605720 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 143, 38

Conread position: 881-1080
Cow position: chr11:35251453-35251646 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 158
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 16, 65

Conread position: 885-1007
Cow position: chr11:462802-462681 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 108, 33

Conread position: 885-1076
Cow position: chr11:12791297-12791119 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 156, 33

Conread position: 885-1076
Cow position: chr11:57153127-57153319 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 155
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 139, 33

Conread position: 885-1080
Cow position: chr11:55282986-55283189 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 154
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 58, 34

Conread position: 888-1080
Cow position: chr11:82529392-82529198 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 14

Conread position: 895-1076
Cow position: chr11:77477750-77477911 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 895-1076
Cow position: chr11:77478424-77478585 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 897-1080
Cow position: chr11:77756236-77756422 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 97, 21

Conread position: 910-1080
Cow position: chr11:60511566-60511739 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 114, 0

Conread position: 910-1080
Cow position: chr11:80269345-80269506 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 910-1080
Cow position: chr11:84729445-84729277 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 114, 8

Conread position: 919-1022
Cow position: chr11:9295131-9295233 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 89
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 87, 0

Conread position: 940-1079
Cow position: chr11:25856669-25856533 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 84, 34

Show alignments to all cow chromosomes.