Cow genome map
| Conread name: | Ss1.1-Spl1-SPL010005A09.5 |
| Conread position: | 788-1035 |
| Cow position: | chr13:1364061-1364310 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 801-1074 |
| Cow position: | chr13:38534753-38535022 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 88, 9 |
| Conread position: | 817-1080 |
| Cow position: | chr13:46464206-46464454 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 30, 70 |
| Conread position: | 823-1080 |
| Cow position: | chr13:12214108-12213838 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 62, 10 |
| Conread position: | 825-1076 |
| Cow position: | chr13:34931865-34931622 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 73, 32 |
| Conread position: | 828-1080 |
| Cow position: | chr13:24403759-24404010 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 36, 49 |
| Conread position: | 830-1020 |
| Cow position: | chr13:57746472-57746271 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 12, 16 |
| Conread position: | 833-1063 |
| Cow position: | chr13:14708989-14708748 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 22, 182 |
| Conread position: | 833-1067 |
| Cow position: | chr13:55407282-55407039 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 833-1080 |
| Cow position: | chr13:43385410-43385159 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 193 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 51, 94 |
| Conread position: | 833-1080 |
| Cow position: | chr13:59997175-59997435 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 44, 82 |
| Conread position: | 834-1080 |
| Cow position: | chr13:2416663-2416411 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 47, 92 |
| Conread position: | 835-1080 |
| Cow position: | chr13:19116020-19115777 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 55, 8 |
| Conread position: | 836-992 |
| Cow position: | chr13:27796015-27795848 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 11, 94 |
| Conread position: | 836-1080 |
| Cow position: | chr13:38361680-38361932 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 49, 91 |
| Conread position: | 837-1080 |
| Cow position: | chr13:14079835-14080085 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 37, 86 |
| Conread position: | 845-1076 |
| Cow position: | chr13:4796434-4796197 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 40, 80 |
| Conread position: | 845-1076 |
| Cow position: | chr13:22194014-22193778 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 40, 83 |
| Conread position: | 845-1076 |
| Cow position: | chr13:34264502-34264728 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 40, 142 |
| Conread position: | 845-1080 |
| Cow position: | chr13:12325691-12325460 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 34, 82 |
| Conread position: | 845-1080 |
| Cow position: | chr13:18596774-18596999 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 179, 40 |
| Conread position: | 845-1080 |
| Cow position: | chr13:48580385-48580623 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 82 |
| Conread position: | 847-1061 |
| Cow position: | chr13:11222830-11223048 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 7 |
| Conread position: | 848-1020 |
| Cow position: | chr13:20876494-20876665 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 71 |
| Conread position: | 853-1073 |
| Cow position: | chr13:43803521-43803294 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 56 |
| Conread position: | 854-1074 |
| Cow position: | chr13:33240114-33239887 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 27, 67 |
| Conread position: | 855-1052 |
| Cow position: | chr13:698970-698772 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 30, 72 |
| Conread position: | 880-1037 |
| Cow position: | chr13:15490084-15489927 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 143, 39 |
| Conread position: | 880-1072 |
| Cow position: | chr13:34885542-34885348 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 75, 38 |
| Conread position: | 880-1074 |
| Cow position: | chr13:5619116-5619312 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 133, 38 |
| Conread position: | 880-1079 |
| Cow position: | chr13:26034346-26034526 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 883-1068 |
| Cow position: | chr13:18839624-18839444 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 152 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 140, 36 |
| Conread position: | 885-992 |
| Cow position: | chr13:51177709-51177603 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 885-1022 |
| Cow position: | chr13:37498259-37498127 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 18, 22 |
| Conread position: | 885-1074 |
| Cow position: | chr13:28605974-28605785 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 139, 33 |
| Conread position: | 885-1076 |
| Cow position: | chr13:17169747-17169564 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 138, 33 |
| Conread position: | 885-1080 |
| Cow position: | chr13:10854459-10854652 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 96, 33 |
| Conread position: | 885-1080 |
| Cow position: | chr13:25955065-25955262 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 130, 33 |
| Conread position: | 885-1080 |
| Cow position: | chr13:44143851-44144040 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 18 |
| Conread position: | 885-1080 |
| Cow position: | chr13:47325342-47325527 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 130, 26 |
| Conread position: | 885-1080 |
| Cow position: | chr13:51241284-51241088 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 157 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 42, 33 |
| Conread position: | 886-1055 |
| Cow position: | chr13:12658260-12658094 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 138, 14 |
| Conread position: | 886-1080 |
| Cow position: | chr13:6921041-6921231 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 137, 20 |
| Conread position: | 887-1080 |
| Cow position: | chr13:51142464-51142646 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 888-1080 |
| Cow position: | chr13:22985012-22984816 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 15, 32 |
| Conread position: | 903-1080 |
| Cow position: | chr13:9103080-9103252 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 120, 15 |
Show alignments to all cow chromosomes.