Cow genome map
| Conread name: | Ss1.1-Spl1-SPL010005A09.5 |
| Conread position: | 815-1000 |
| Cow position: | chr2:16522227-16522036 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 819-1022 |
| Cow position: | chr2:78912182-78912390 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 6 |
| Conread position: | 825-1080 |
| Cow position: | chr2:7365608-7365863 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 20 |
| Conread position: | 825-1080 |
| Cow position: | chr2:13685210-13684956 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 206 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 27, 104 |
| Conread position: | 826-1079 |
| Cow position: | chr2:7212412-7212154 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 26, 104 |
| Conread position: | 830-1023 |
| Cow position: | chr2:13048821-13048622 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 55, 98 |
| Conread position: | 830-1080 |
| Cow position: | chr2:18274052-18274309 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 42, 96 |
| Conread position: | 830-1080 |
| Cow position: | chr2:33790868-33791123 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 54, 97 |
| Conread position: | 833-1079 |
| Cow position: | chr2:12776966-12777212 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 52, 29 |
| Conread position: | 834-1074 |
| Cow position: | chr2:5767443-5767682 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 836-1036 |
| Cow position: | chr2:20534020-20534229 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 47, 92 |
| Conread position: | 837-1073 |
| Cow position: | chr2:23062315-23062555 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 48, 91 |
| Conread position: | 838-1043 |
| Cow position: | chr2:68962504-68962705 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 53, 85 |
| Conread position: | 839-1040 |
| Cow position: | chr2:53280986-53280772 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 46, 17 |
| Conread position: | 843-982 |
| Cow position: | chr2:37155407-37155553 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 83 |
| Conread position: | 843-1051 |
| Cow position: | chr2:72599416-72599195 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 42, 15 |
| Conread position: | 843-1075 |
| Cow position: | chr2:47746820-47746590 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 43, 86 |
| Conread position: | 843-1080 |
| Cow position: | chr2:63287554-63287789 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 85 |
| Conread position: | 845-1022 |
| Cow position: | chr2:18760082-18759896 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 108 |
| Conread position: | 845-1051 |
| Cow position: | chr2:74387528-74387748 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 845-1058 |
| Cow position: | chr2:51826575-51826784 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 845-1073 |
| Cow position: | chr2:9043794-9043565 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 42, 76 |
| Conread position: | 845-1076 |
| Cow position: | chr2:38805752-38805991 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 40, 84 |
| Conread position: | 845-1079 |
| Cow position: | chr2:41491229-41490999 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 34 |
| Conread position: | 845-1080 |
| Cow position: | chr2:14037125-14037360 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 41, 79 |
| Conread position: | 845-1080 |
| Cow position: | chr2:46130332-46130576 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 40, 84 |
| Conread position: | 845-1080 |
| Cow position: | chr2:53716402-53716627 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 119, 36 |
| Conread position: | 845-1080 |
| Cow position: | chr2:62463393-62463640 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 40, 85 |
| Conread position: | 846-1055 |
| Cow position: | chr2:56822735-56822951 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 39, 156 |
| Conread position: | 846-1080 |
| Cow position: | chr2:41417640-41417874 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 846-1080 |
| Cow position: | chr2:82827781-82828017 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 37, 83 |
| Conread position: | 847-1080 |
| Cow position: | chr2:52183545-52183310 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 38, 77 |
| Conread position: | 848-1073 |
| Cow position: | chr2:43344690-43344924 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 849-1080 |
| Cow position: | chr2:19750925-19750686 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 36, 73 |
| Conread position: | 856-1080 |
| Cow position: | chr2:40370191-40370408 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 58 |
| Conread position: | 862-992 |
| Cow position: | chr2:18436252-18436125 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 873-1076 |
| Cow position: | chr2:44983105-44983310 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 46 |
| Conread position: | 880-1054 |
| Cow position: | chr2:73204878-73205052 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 141, 39 |
| Conread position: | 880-1062 |
| Cow position: | chr2:39412202-39412029 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 134, 32 |
| Conread position: | 880-1074 |
| Cow position: | chr2:9710017-9709826 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 143, 38 |
| Conread position: | 880-1080 |
| Cow position: | chr2:80603773-80603973 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 885-1067 |
| Cow position: | chr2:27782624-27782810 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 100, 31 |
| Conread position: | 885-1073 |
| Cow position: | chr2:49441382-49441194 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 138, 33 |
| Conread position: | 885-1074 |
| Cow position: | chr2:3730657-3730472 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 158 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 135, 20 |
| Conread position: | 885-1076 |
| Cow position: | chr2:31420544-31420356 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 138, 33 |
| Conread position: | 885-1079 |
| Cow position: | chr2:19480889-19480706 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 138, 33 |
| Conread position: | 886-1076 |
| Cow position: | chr2:19130696-19130517 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 138, 32 |
| Conread position: | 886-1080 |
| Cow position: | chr2:3181968-3182163 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 137, 30 |
| Conread position: | 895-1076 |
| Cow position: | chr2:18249076-18249246 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 895-1080 |
| Cow position: | chr2:38583379-38583566 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 108, 24 |
| Conread position: | 918-1080 |
| Cow position: | chr2:20282012-20281852 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 106, 64 |
Show alignments to all cow chromosomes.