Cow genome map
| Conread name: | Ss1.1-Spl1-SPL010005A09.5 |
| Conread position: | 783-1076 |
| Cow position: | chr3:5084508-5084797 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 12, 73 |
| Conread position: | 805-1077 |
| Cow position: | chr3:26581463-26581745 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 23 |
| Conread position: | 809-1079 |
| Cow position: | chr3:50500164-50499903 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 45 |
| Conread position: | 824-1079 |
| Cow position: | chr3:2285273-2285017 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 825-983 |
| Cow position: | chr3:22054047-22054213 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 825-1080 |
| Cow position: | chr3:3690123-3690369 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 25, 77 |
| Conread position: | 825-1080 |
| Cow position: | chr3:43004214-43004478 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 5, 27 |
| Conread position: | 825-1080 |
| Cow position: | chr3:62812393-62812650 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 101 |
| Conread position: | 826-1037 |
| Cow position: | chr3:45735764-45735545 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 53, 19 |
| Conread position: | 833-1022 |
| Cow position: | chr3:49414168-49414361 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 13, 96 |
| Conread position: | 833-1080 |
| Cow position: | chr3:12531546-12531792 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 31, 52 |
| Conread position: | 834-988 |
| Cow position: | chr3:8754036-8753873 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 94 |
| Conread position: | 835-1076 |
| Cow position: | chr3:12311658-12311405 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 50, 93 |
| Conread position: | 835-1080 |
| Cow position: | chr3:68127667-68127425 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 51, 89 |
| Conread position: | 838-1076 |
| Cow position: | chr3:81919352-81919582 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 17, 47 |
| Conread position: | 841-1080 |
| Cow position: | chr3:27346789-27347034 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 44, 72 |
| Conread position: | 842-1080 |
| Cow position: | chr3:34165080-34165323 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 41, 82 |
| Conread position: | 842-1080 |
| Cow position: | chr3:56042155-56042393 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 43, 84 |
| Conread position: | 843-1072 |
| Cow position: | chr3:39385538-39385765 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 42, 79 |
| Conread position: | 843-1080 |
| Cow position: | chr3:1549883-1549638 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 41, 58 |
| Conread position: | 844-1073 |
| Cow position: | chr3:55106848-55107083 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 84 |
| Conread position: | 844-1080 |
| Cow position: | chr3:58349035-58348803 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 93, 72 |
| Conread position: | 845-1001 |
| Cow position: | chr3:36514792-36514951 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 845-1007 |
| Cow position: | chr3:36538321-36538498 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 845-1020 |
| Cow position: | chr3:41860792-41860974 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 85 |
| Conread position: | 845-1059 |
| Cow position: | chr3:31286333-31286553 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 9, 82 |
| Conread position: | 845-1070 |
| Cow position: | chr3:1339473-1339241 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 11, 85 |
| Conread position: | 845-1076 |
| Cow position: | chr3:24532392-24532149 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 83 |
| Conread position: | 845-1076 |
| Cow position: | chr3:64082025-64081797 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 41, 35 |
| Conread position: | 845-1079 |
| Cow position: | chr3:13527180-13526956 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 169, 35 |
| Conread position: | 845-1079 |
| Cow position: | chr3:63334140-63334380 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 15, 84 |
| Conread position: | 845-1080 |
| Cow position: | chr3:73154518-73154287 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 40, 83 |
| Conread position: | 845-1080 |
| Cow position: | chr3:77589954-77589721 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 39, 83 |
| Conread position: | 846-1080 |
| Cow position: | chr3:23478800-23478558 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 847-1080 |
| Cow position: | chr3:31528391-31528166 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 848-1076 |
| Cow position: | chr3:74723871-74724110 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 848-1076 |
| Cow position: | chr3:78442319-78442557 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 20, 81 |
| Conread position: | 850-1076 |
| Cow position: | chr3:15091431-15091211 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 35, 78 |
| Conread position: | 853-1080 |
| Cow position: | chr3:23274409-23274641 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 32, 75 |
| Conread position: | 855-1013 |
| Cow position: | chr3:5317201-5317368 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 30, 73 |
| Conread position: | 855-1076 |
| Cow position: | chr3:21332259-21332478 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 30, 108 |
| Conread position: | 857-1073 |
| Cow position: | chr3:60854287-60854510 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 28, 153 |
| Conread position: | 859-1080 |
| Cow position: | chr3:43966865-43967085 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 862-1076 |
| Cow position: | chr3:27633462-27633679 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 871-1080 |
| Cow position: | chr3:79315720-79315508 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 14, 52 |
| Conread position: | 879-1055 |
| Cow position: | chr3:52658016-52657847 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 40 |
| Conread position: | 879-1080 |
| Cow position: | chr3:74846200-74846399 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 98 |
| Conread position: | 880-1069 |
| Cow position: | chr3:52817527-52817339 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 144, 38 |
| Conread position: | 880-1080 |
| Cow position: | chr3:45642018-45641834 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 127, 40 |
| Conread position: | 882-1080 |
| Cow position: | chr3:60947672-60947865 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 885-1035 |
| Cow position: | chr3:28707464-28707322 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 885-1047 |
| Cow position: | chr3:5545472-5545316 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 139, 13 |
| Conread position: | 885-1069 |
| Cow position: | chr3:73418580-73418391 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 26, 145 |
| Conread position: | 886-1071 |
| Cow position: | chr3:35028886-35029083 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 95, 35 |
| Conread position: | 886-1072 |
| Cow position: | chr3:32773715-32773528 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 137, 34 |
| Conread position: | 886-1080 |
| Cow position: | chr3:6798480-6798668 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 135, 32 |
| Conread position: | 886-1080 |
| Cow position: | chr3:17519275-17519463 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 122, 32 |
| Conread position: | 887-1037 |
| Cow position: | chr3:69148024-69148172 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 127, 31 |
| Conread position: | 897-1010 |
| Cow position: | chr3:9187337-9187226 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 898-1080 |
| Cow position: | chr3:47498023-47497845 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 126, 16 |
| Conread position: | 900-1057 |
| Cow position: | chr3:27879423-27879579 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 61, 18 |
| Conread position: | 905-1055 |
| Cow position: | chr3:65392568-65392423 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 118, 13 |
| Conread position: | 908-1079 |
| Cow position: | chr3:32513620-32513784 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 116, 10 |
| Conread position: | 909-1080 |
| Cow position: | chr3:56164261-56164092 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 33, 9 |
Show alignments to all cow chromosomes.