Cow genome map
| Conread name: | Ss1.1-Spl1-SPL010005A09.5 |
| Conread position: | 782-1038 |
| Cow position: | chr5:58384971-58384704 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 30, 149 |
| Conread position: | 810-1076 |
| Cow position: | chr5:15808269-15808540 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 10, 114 |
| Conread position: | 814-1080 |
| Cow position: | chr5:71279297-71279025 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 45, 54 |
| Conread position: | 816-1076 |
| Cow position: | chr5:54158094-54157826 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 69, 26 |
| Conread position: | 825-1080 |
| Cow position: | chr5:1286993-1286737 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 57, 7 |
| Conread position: | 827-1000 |
| Cow position: | chr5:67002077-67001893 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 20, 101 |
| Conread position: | 828-1080 |
| Cow position: | chr5:9025806-9025553 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 52, 40 |
| Conread position: | 829-997 |
| Cow position: | chr5:10455971-10455799 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 38 |
| Conread position: | 830-1080 |
| Cow position: | chr5:56109534-56109784 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 13, 65 |
| Conread position: | 831-1076 |
| Cow position: | chr5:23235090-23234851 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 51, 10 |
| Conread position: | 832-1080 |
| Cow position: | chr5:12329068-12329317 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 13 |
| Conread position: | 833-1055 |
| Cow position: | chr5:67579682-67579453 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 48, 95 |
| Conread position: | 833-1076 |
| Cow position: | chr5:51953505-51953253 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 50, 94 |
| Conread position: | 834-1022 |
| Cow position: | chr5:42587278-42587472 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 51, 94 |
| Conread position: | 835-1061 |
| Cow position: | chr5:12602520-12602291 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 49, 93 |
| Conread position: | 835-1080 |
| Cow position: | chr5:34168753-34168513 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 164, 48 |
| Conread position: | 835-1080 |
| Cow position: | chr5:39118771-39118535 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 837-1076 |
| Cow position: | chr5:1304602-1304843 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 48, 98 |
| Conread position: | 837-1080 |
| Cow position: | chr5:53921920-53922175 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 52, 118 |
| Conread position: | 838-1076 |
| Cow position: | chr5:18379858-18379631 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 840-1075 |
| Cow position: | chr5:27493357-27493115 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 45, 86 |
| Conread position: | 841-1062 |
| Cow position: | chr5:26098067-26098287 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 843-1080 |
| Cow position: | chr5:25355617-25355386 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 38, 76 |
| Conread position: | 843-1080 |
| Cow position: | chr5:47697769-47698014 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 42, 84 |
| Conread position: | 844-1059 |
| Cow position: | chr5:37624694-37624469 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 41, 80 |
| Conread position: | 845-976 |
| Cow position: | chr5:59640191-59640050 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 40, 82 |
| Conread position: | 845-1055 |
| Cow position: | chr5:9232658-9232868 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 40, 78 |
| Conread position: | 845-1065 |
| Cow position: | chr5:26562753-26562531 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 40, 77 |
| Conread position: | 845-1076 |
| Cow position: | chr5:31551446-31551213 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 46, 129 |
| Conread position: | 845-1076 |
| Cow position: | chr5:33516155-33516403 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 37, 83 |
| Conread position: | 845-1079 |
| Cow position: | chr5:12581310-12581086 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 34, 81 |
| Conread position: | 845-1079 |
| Cow position: | chr5:27679205-27679451 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 38, 83 |
| Conread position: | 845-1079 |
| Cow position: | chr5:67463831-67463590 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 845-1080 |
| Cow position: | chr5:14071965-14072203 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 191 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 40, 82 |
| Conread position: | 845-1080 |
| Cow position: | chr5:21145608-21145854 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 192 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 12, 85 |
| Conread position: | 845-1080 |
| Cow position: | chr5:29029961-29029715 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 38, 93 |
| Conread position: | 846-988 |
| Cow position: | chr5:62580595-62580444 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 35, 81 |
| Conread position: | 846-1021 |
| Cow position: | chr5:5830576-5830753 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 172 |
| Conread position: | 846-1076 |
| Cow position: | chr5:29431053-29431275 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 66 |
| Conread position: | 846-1079 |
| Cow position: | chr5:15704949-15705186 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 36, 85 |
| Conread position: | 847-1035 |
| Cow position: | chr5:9585135-9585332 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 38, 75 |
| Conread position: | 847-1042 |
| Cow position: | chr5:54761639-54761444 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 33, 74 |
| Conread position: | 853-1080 |
| Cow position: | chr5:56826653-56826418 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 81 |
| Conread position: | 854-1072 |
| Cow position: | chr5:45911705-45911912 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 66 |
| Conread position: | 871-1058 |
| Cow position: | chr5:11236162-11235980 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 48 |
| Conread position: | 871-1080 |
| Cow position: | chr5:34482959-34483167 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 50 |
| Conread position: | 879-1040 |
| Cow position: | chr5:31944166-31944006 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 144, 115 |
| Conread position: | 880-1080 |
| Cow position: | chr5:19298906-19299101 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 143, 38 |
| Conread position: | 880-1080 |
| Cow position: | chr5:51076051-51076250 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 125, 38 |
| Conread position: | 880-1080 |
| Cow position: | chr5:60725834-60725638 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 143, 38 |
| Conread position: | 880-1080 |
| Cow position: | chr5:60969012-60968809 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 122, 40 |
| Conread position: | 885-1022 |
| Cow position: | chr5:31461776-31461636 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 85, 33 |
| Conread position: | 885-1055 |
| Cow position: | chr5:56742223-56742058 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 885-1076 |
| Cow position: | chr5:28770822-28770638 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 130, 33 |
| Conread position: | 885-1080 |
| Cow position: | chr5:13575183-13575374 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 139, 33 |
| Conread position: | 885-1080 |
| Cow position: | chr5:63621115-63620928 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 885-1080 |
| Cow position: | chr5:70253235-70253038 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 93, 19 |
| Conread position: | 886-1076 |
| Cow position: | chr5:20717683-20717504 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 138, 32 |
| Conread position: | 886-1080 |
| Cow position: | chr5:20648695-20648884 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 157 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 135, 32 |
| Conread position: | 886-1080 |
| Cow position: | chr5:39206729-39206918 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 137, 32 |
| Conread position: | 910-1080 |
| Cow position: | chr5:57127994-57127831 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 114, 8 |
| Conread position: | 919-1076 |
| Cow position: | chr5:12610137-12609983 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 104, 55 |
Show alignments to all cow chromosomes.