Cow genome map
| Conread name: | Ss1.1-Spl1-SPL010005A09.5 |
| Conread position: | 757-1072 |
| Cow position: | chr6:29078451-29078133 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 45, 30 |
| Conread position: | 807-992 |
| Cow position: | chr6:18561931-18562111 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 75, 17 |
| Conread position: | 820-1052 |
| Cow position: | chr6:1939830-1940077 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 65, 25 |
| Conread position: | 824-1076 |
| Cow position: | chr6:14161962-14162216 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 14, 104 |
| Conread position: | 825-1080 |
| Cow position: | chr6:6635795-6635536 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 56, 142 |
| Conread position: | 826-1080 |
| Cow position: | chr6:35126460-35126713 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 57, 101 |
| Conread position: | 830-1080 |
| Cow position: | chr6:14280309-14280046 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 55, 98 |
| Conread position: | 831-991 |
| Cow position: | chr6:6244096-6244262 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 831-1076 |
| Cow position: | chr6:35697768-35698019 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 24, 97 |
| Conread position: | 835-1076 |
| Cow position: | chr6:41558127-41557879 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 48, 70 |
| Conread position: | 837-1069 |
| Cow position: | chr6:11159352-11159593 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 48, 91 |
| Conread position: | 837-1073 |
| Cow position: | chr6:1076781-1077020 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 48, 8 |
| Conread position: | 837-1079 |
| Cow position: | chr6:23892195-23891945 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 48, 87 |
| Conread position: | 838-1075 |
| Cow position: | chr6:62328180-62327940 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 47, 185 |
| Conread position: | 838-1080 |
| Cow position: | chr6:55398438-55398197 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 45, 90 |
| Conread position: | 843-1080 |
| Cow position: | chr6:45616800-45617035 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 84 |
| Conread position: | 844-1018 |
| Cow position: | chr6:24260173-24260354 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 39, 85 |
| Conread position: | 844-1062 |
| Cow position: | chr6:53416319-53416547 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 14, 86 |
| Conread position: | 844-1079 |
| Cow position: | chr6:31687557-31687795 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 39, 83 |
| Conread position: | 845-999 |
| Cow position: | chr6:5678404-5678563 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 38, 135 |
| Conread position: | 845-1075 |
| Cow position: | chr6:6722777-6722541 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 845-1076 |
| Cow position: | chr6:50502225-50501993 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 845-1079 |
| Cow position: | chr6:3018102-3017863 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 41, 83 |
| Conread position: | 845-1080 |
| Cow position: | chr6:20332942-20332702 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 40, 77 |
| Conread position: | 845-1080 |
| Cow position: | chr6:32429053-32428835 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 169, 33 |
| Conread position: | 845-1080 |
| Cow position: | chr6:40241315-40241079 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 37, 81 |
| Conread position: | 846-1076 |
| Cow position: | chr6:27711265-27711026 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 26, 78 |
| Conread position: | 846-1080 |
| Cow position: | chr6:4665874-4666106 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 35, 69 |
| Conread position: | 846-1080 |
| Cow position: | chr6:58593512-58593740 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 34, 164 |
| Conread position: | 847-992 |
| Cow position: | chr6:3935993-3936147 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 848-985 |
| Cow position: | chr6:13092443-13092589 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 860-1076 |
| Cow position: | chr6:62753876-62754094 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 25, 37 |
| Conread position: | 878-1074 |
| Cow position: | chr6:43595953-43596148 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 879-978 |
| Cow position: | chr6:28008864-28008962 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 879-1055 |
| Cow position: | chr6:20748976-20748803 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 122, 39 |
| Conread position: | 880-1074 |
| Cow position: | chr6:44377861-44377667 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 63, 38 |
| Conread position: | 880-1080 |
| Cow position: | chr6:34557099-34556903 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 143, 38 |
| Conread position: | 885-1073 |
| Cow position: | chr6:55662319-55662130 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 129, 33 |
| Conread position: | 885-1080 |
| Cow position: | chr6:39293752-39293567 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 111, 33 |
| Conread position: | 885-1080 |
| Cow position: | chr6:39917750-39917559 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 86, 33 |
| Conread position: | 886-1055 |
| Cow position: | chr6:35832136-35831973 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 137, 32 |
| Conread position: | 886-1067 |
| Cow position: | chr6:37085476-37085297 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 137, 32 |
| Conread position: | 886-1079 |
| Cow position: | chr6:24496345-24496536 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 137, 32 |
| Conread position: | 888-1079 |
| Cow position: | chr6:5500481-5500672 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 119, 30 |
| Conread position: | 894-1080 |
| Cow position: | chr6:3373842-3374031 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 100, 31 |
| Conread position: | 906-1076 |
| Cow position: | chr6:41157787-41157623 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 120, 12 |
| Conread position: | 907-1079 |
| Cow position: | chr6:33311668-33311502 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 121, 13 |
| Conread position: | 922-1080 |
| Cow position: | chr6:811852-812014 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 955-1054 |
| Cow position: | chr6:12808713-12808813 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
Show alignments to all cow chromosomes.