Cow genome map
| Conread name: | Ss1.1-Spl1-SPL010005A09.5 |
| Conread position: | 791-1040 |
| Cow position: | chrX:40350576-40350324 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 803-1080 |
| Cow position: | chrX:25106882-25106606 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 811-1080 |
| Cow position: | chrX:4590610-4590335 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 11, 61 |
| Conread position: | 825-1038 |
| Cow position: | chrX:30785201-30784978 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 13, 101 |
| Conread position: | 825-1064 |
| Cow position: | chrX:18518682-18518438 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 15, 104 |
| Conread position: | 826-1080 |
| Cow position: | chrX:13403105-13403362 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 59, 100 |
| Conread position: | 827-1068 |
| Cow position: | chrX:2186901-2186650 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 19, 188 |
| Conread position: | 827-1080 |
| Cow position: | chrX:40353951-40353691 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 44, 98 |
| Conread position: | 830-1054 |
| Cow position: | chrX:16817281-16817058 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 55, 37 |
| Conread position: | 830-1073 |
| Cow position: | chrX:20958218-20957958 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 53, 32 |
| Conread position: | 830-1080 |
| Cow position: | chrX:37981021-37980771 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 832-1079 |
| Cow position: | chrX:2700487-2700724 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 16, 53 |
| Conread position: | 834-1051 |
| Cow position: | chrX:11851137-11851355 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 91 |
| Conread position: | 836-992 |
| Cow position: | chrX:19391640-19391804 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 838-1076 |
| Cow position: | chrX:18699727-18699971 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 45, 90 |
| Conread position: | 839-1064 |
| Cow position: | chrX:35552972-35552746 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 8, 85 |
| Conread position: | 840-1079 |
| Cow position: | chrX:37749289-37749034 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 11, 90 |
| Conread position: | 842-1076 |
| Cow position: | chrX:9910129-9910365 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 6, 87 |
| Conread position: | 844-1076 |
| Cow position: | chrX:1330172-1330409 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 845-1071 |
| Cow position: | chrX:6672404-6672170 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 189 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 845-1075 |
| Cow position: | chrX:6472335-6472097 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 40, 83 |
| Conread position: | 845-1075 |
| Cow position: | chrX:21816890-21816658 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 40, 9 |
| Conread position: | 845-1076 |
| Cow position: | chrX:11983209-11982980 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 63, 46 |
| Conread position: | 845-1080 |
| Cow position: | chrX:4440476-4440231 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 81 |
| Conread position: | 845-1080 |
| Cow position: | chrX:4601030-4601259 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 67 |
| Conread position: | 845-1080 |
| Cow position: | chrX:5956714-5956951 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 40, 143 |
| Conread position: | 845-1080 |
| Cow position: | chrX:19127018-19127252 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 845-1080 |
| Cow position: | chrX:20505330-20505091 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 83 |
| Conread position: | 846-1055 |
| Cow position: | chrX:12227588-12227381 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 847-1006 |
| Cow position: | chrX:25653697-25653542 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 848-996 |
| Cow position: | chrX:24286678-24286525 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 848-1076 |
| Cow position: | chrX:25453794-25453569 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 37, 77 |
| Conread position: | 848-1080 |
| Cow position: | chrX:23253594-23253828 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 8, 80 |
| Conread position: | 848-1080 |
| Cow position: | chrX:37236624-37236389 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 849-1080 |
| Cow position: | chrX:27458117-27458349 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 36, 74 |
| Conread position: | 854-1040 |
| Cow position: | chrX:1427890-1427692 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 31, 73 |
| Conread position: | 855-1080 |
| Cow position: | chrX:4625528-4625290 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 190 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 30, 78 |
| Conread position: | 857-1080 |
| Cow position: | chrX:43647153-43647372 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 163, 25 |
| Conread position: | 858-1069 |
| Cow position: | chrX:32546504-32546290 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 123, 60 |
| Conread position: | 867-1074 |
| Cow position: | chrX:4019327-4019541 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 14, 52 |
| Conread position: | 878-1080 |
| Cow position: | chrX:11675654-11675454 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 164 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 145, 41 |
| Conread position: | 879-1035 |
| Cow position: | chrX:25921222-25921369 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 880-1079 |
| Cow position: | chrX:4630796-4630990 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 143, 31 |
| Conread position: | 880-1080 |
| Cow position: | chrX:21885519-21885726 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 885-1076 |
| Cow position: | chrX:4597122-4597330 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 885-1076 |
| Cow position: | chrX:19017659-19017856 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 159 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 885-1076 |
| Cow position: | chrX:37957138-37956948 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 886-1076 |
| Cow position: | chrX:957063-956872 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 120, 32 |
| Conread position: | 886-1080 |
| Cow position: | chrX:2147883-2147701 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 137, 32 |
| Conread position: | 886-1080 |
| Cow position: | chrX:12688498-12688694 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 106, 32 |
| Conread position: | 887-1076 |
| Cow position: | chrX:18814748-18814555 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 17, 51 |
| Conread position: | 894-1066 |
| Cow position: | chrX:4947932-4948101 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 116, 24 |
| Conread position: | 942-1080 |
| Cow position: | chrX:24951850-24951986 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 82, 52 |
Show alignments to all cow chromosomes.