Cow genome map


           Conread name:
           Ss1.1-Spl1-SPL010013G09.5
        

               Conread position:
               1-168
               

               Cow position:
               chr5:27149515-27149684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               121, 21
               

               Conread position:
               167-257
               

               Cow position:
               chr5:27151259-27151349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               91
               

               Alignm identity:
               87
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               280-398
               

               Cow position:
               chr5:27162110-27162228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               114
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               393-520
               

               Cow position:
               chr5:27162567-27162693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               120
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               503-617
               

               Cow position:
               chr5:27165759-27165872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               618-693
               

               Cow position:
               chr5:27165958-27166033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               76
               

               Alignm identity:
               73
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               686-1118
               

               Cow position:
               chr5:27166755-27167173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 130
               

               Conread position:
               1112-1263
               

               Cow position:
               chr5:27167350-27167494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               135, 25
               
Show alignments to all cow chromosomes.