Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Spl1-SPL010021F06.5
        

               Conread position:
               287-549
               

               Cow position:
               chr24:5130731-5130464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               306-715
               

               Cow position:
               chr24:5849824-5849390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               300
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               9, 126
               

               Conread position:
               310-573
               

               Cow position:
               chr24:16610861-16610597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               190
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               22, 140
               

               Conread position:
               315-460
               

               Cow position:
               chr24:8814418-8814271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               9, 102
               

               Conread position:
               315-648
               

               Cow position:
               chr24:32668876-32669211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               235
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               26, 8
               

               Conread position:
               315-650
               

               Cow position:
               chr24:40056124-40055789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               248
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               9, 101
               

               Conread position:
               315-660
               

               Cow position:
               chr24:38593237-38593601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               16, 168
               

               Conread position:
               315-670
               

               Cow position:
               chr24:6413397-6413769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               255
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               23, 345
               

               Conread position:
               315-881
               

               Cow position:
               chr24:40129703-40130301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               606
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 169
               

               Conread position:
               315-897
               

               Cow position:
               chr24:9070844-9070259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               603
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 297
               

               Conread position:
               322-775
               

               Cow position:
               chr24:32823194-32822709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               322
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               9, 80
               

               Conread position:
               322-820
               

               Cow position:
               chr24:31309025-31309498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 102
               

               Conread position:
               323-717
               

               Cow position:
               chr24:43635033-43635441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 148
               

               Conread position:
               324-465
               

               Cow position:
               chr24:28216450-28216594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               114
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               324-468
               

               Cow position:
               chr24:16897237-16897090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               12, 138
               

               Conread position:
               324-505
               

               Cow position:
               chr24:37480699-37480511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               324-557
               

               Cow position:
               chr24:17365050-17364814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               12, 148
               

               Conread position:
               324-568
               

               Cow position:
               chr24:16625894-16625654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 0
               

               Conread position:
               324-752
               

               Cow position:
               chr24:32213066-32212628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               299
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               12, 297
               

               Conread position:
               324-755
               

               Cow position:
               chr24:6035245-6034808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               281
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               17, 121
               

               Conread position:
               324-762
               

               Cow position:
               chr24:6149636-6150072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 154
               

               Conread position:
               324-882
               

               Cow position:
               chr24:29596202-29595634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               582
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 35
               

               Conread position:
               324-891
               

               Cow position:
               chr24:28690301-28690861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               581
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 241
               

               Conread position:
               325-568
               

               Cow position:
               chr24:29606460-29606220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               23, 65
               

               Conread position:
               326-662
               

               Cow position:
               chr24:20862355-20862004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               10, 140
               

               Conread position:
               329-882
               

               Cow position:
               chr24:37650291-37650841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               568
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 91
               

               Conread position:
               331-557
               

               Cow position:
               chr24:25530553-25530326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               331-771
               

               Cow position:
               chr24:13819554-13820001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               295
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               10, 134
               

               Conread position:
               331-789
               

               Cow position:
               chr24:202022-201561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 142
               

               Conread position:
               332-533
               

               Cow position:
               chr24:16844715-16844516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               332-568
               

               Cow position:
               chr24:39253869-39254106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               332-897
               

               Cow position:
               chr24:39238412-39238942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               571
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 95
               

               Conread position:
               333-565
               

               Cow position:
               chr24:42908081-42907853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               144, 91
               

               Conread position:
               334-511
               

               Cow position:
               chr24:15372739-15372915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               7, 80
               

               Conread position:
               334-533
               

               Cow position:
               chr24:27732540-27732338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               7, 140
               

               Conread position:
               334-541
               

               Cow position:
               chr24:27754312-27754519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               7, 131
               

               Conread position:
               334-549
               

               Cow position:
               chr24:6443382-6443594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               7, 73
               

               Conread position:
               334-551
               

               Cow position:
               chr24:34271136-34271354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               334-565
               

               Cow position:
               chr24:8810723-8810957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               7, 12
               

               Conread position:
               334-565
               

               Cow position:
               chr24:41963250-41963475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               7, 80
               

               Conread position:
               334-568
               

               Cow position:
               chr24:14353292-14353527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               7, 193
               

               Conread position:
               334-568
               

               Cow position:
               chr24:15919322-15919554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               7, 58
               

               Conread position:
               334-568
               

               Cow position:
               chr24:22821614-22821864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               50, 195
               

               Conread position:
               334-568
               

               Cow position:
               chr24:24002596-24002826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               334-569
               

               Cow position:
               chr24:30515013-30515236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               7, 55
               

               Conread position:
               334-586
               

               Cow position:
               chr24:28689324-28689584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               195
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               334-651
               

               Cow position:
               chr24:38643252-38643573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               217
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               7, 130
               

               Conread position:
               334-653
               

               Cow position:
               chr24:39500662-39500338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               7, 80
               

               Conread position:
               334-658
               

               Cow position:
               chr24:14124706-14125044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               225
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               7, 261
               

               Conread position:
               334-662
               

               Cow position:
               chr24:35572103-35572439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 113
               

               Conread position:
               334-663
               

               Cow position:
               chr24:42581214-42580889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               227
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               129, 141
               

               Conread position:
               334-672
               

               Cow position:
               chr24:33985398-33985050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               233
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               217, 129
               

               Conread position:
               334-720
               

               Cow position:
               chr24:43384371-43384765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               219, 317
               

               Conread position:
               334-728
               

               Cow position:
               chr24:39729803-39729401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               271
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               50, 318
               

               Conread position:
               334-750
               

               Cow position:
               chr24:23034281-23034706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               280
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               7, 317
               

               Conread position:
               334-751
               

               Cow position:
               chr24:15881033-15881458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               288
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               7, 142
               

               Conread position:
               334-760
               

               Cow position:
               chr24:34564742-34565166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 7
               

               Conread position:
               334-824
               

               Cow position:
               chr24:12851354-12851818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               326
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               7, 64
               

               Conread position:
               334-850
               

               Cow position:
               chr24:18025349-18024835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 99
               

               Conread position:
               334-888
               

               Cow position:
               chr24:17407012-17407563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 91
               

               Conread position:
               334-890
               

               Cow position:
               chr24:35986095-35985559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 84
               

               Conread position:
               334-895
               

               Cow position:
               chr24:18732499-18731929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 63
               

               Conread position:
               334-897
               

               Cow position:
               chr24:6450148-6450691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               580
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 87
               

               Conread position:
               335-505
               

               Cow position:
               chr24:13238028-13238197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               335-549
               

               Cow position:
               chr24:33938801-33939016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               335-568
               

               Cow position:
               chr24:23184419-23184185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               336-571
               

               Cow position:
               chr24:13084262-13084032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               170, 60
               

               Conread position:
               336-896
               

               Cow position:
               chr24:6102429-6103007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               594
               

               Alignm identity:
               390
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               102, 13
               

               Conread position:
               337-670
               

               Cow position:
               chr24:14530982-14531316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               6, 84
               

               Conread position:
               337-824
               

               Cow position:
               chr24:14648708-14648250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 77
               

               Conread position:
               337-882
               

               Cow position:
               chr24:39850255-39849726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               549
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 8
               

               Conread position:
               338-565
               

               Cow position:
               chr24:22193345-22193573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               338-758
               

               Cow position:
               chr24:3152954-3152533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 89
               

               Conread position:
               339-550
               

               Cow position:
               chr24:27593549-27593338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               339-663
               

               Cow position:
               chr24:35568811-35569139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 125
               

               Conread position:
               339-667
               

               Cow position:
               chr24:27683815-27683490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               227
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               220, 69
               

               Conread position:
               339-768
               

               Cow position:
               chr24:12146638-12146213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               275
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               130, 153
               

               Conread position:
               339-882
               

               Cow position:
               chr24:28553924-28553406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               554
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 126
               

               Conread position:
               340-449
               

               Cow position:
               chr24:17491527-17491636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               88
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-454
               

               Cow position:
               chr24:40210055-40209941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               91
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-465
               

               Cow position:
               chr24:13373554-13373429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               101
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-465
               

               Cow position:
               chr24:14760853-14760977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               103
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               340-465
               

               Cow position:
               chr24:26231181-26231056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               97
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-466
               

               Cow position:
               chr24:18740415-18740289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-466
               

               Cow position:
               chr24:26795370-26795496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-466
               

               Cow position:
               chr24:40789641-40789515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               101
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-468
               

               Cow position:
               chr24:27039505-27039633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               103
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-482
               

               Cow position:
               chr24:10517897-10518039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-485
               

               Cow position:
               chr24:40274170-40274314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               106
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               340-505
               

               Cow position:
               chr24:4649324-4649159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-505
               

               Cow position:
               chr24:27484583-27484419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               124
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               340-505
               

               Cow position:
               chr24:32087536-32087372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               120
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               340-505
               

               Cow position:
               chr24:32419646-32419811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-508
               

               Cow position:
               chr24:32070291-32070461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               137, 72
               

               Conread position:
               340-514
               

               Cow position:
               chr24:39914038-39914208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               340-526
               

               Cow position:
               chr24:13117586-13117772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-534
               

               Cow position:
               chr24:27153699-27153505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-540
               

               Cow position:
               chr24:33379678-33379878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-540
               

               Cow position:
               chr24:38655469-38655269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               159
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-541
               

               Cow position:
               chr24:22187489-22187294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               137, 0
               

               Conread position:
               340-541
               

               Cow position:
               chr24:29073054-29072854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               142
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               170, 0
               

               Conread position:
               340-543
               

               Cow position:
               chr24:17544009-17543806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               180, 176
               

               Conread position:
               340-544
               

               Cow position:
               chr24:4616123-4615919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               162
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-544
               

               Cow position:
               chr24:16993921-16993717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-546
               

               Cow position:
               chr24:12198399-12198195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               340-546
               

               Cow position:
               chr24:15793065-15792860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               340-548
               

               Cow position:
               chr24:15084533-15084742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               189, 0
               

               Conread position:
               340-549
               

               Cow position:
               chr24:8608418-8608624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               340-549
               

               Cow position:
               chr24:12191582-12191794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               123, 136
               

               Conread position:
               340-549
               

               Cow position:
               chr24:12508117-12508323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               340-549
               

               Cow position:
               chr24:19679495-19679704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-549
               

               Cow position:
               chr24:35066840-35066632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               163
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               127, 136
               

               Conread position:
               340-549
               

               Cow position:
               chr24:36722354-36722553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               340-550
               

               Cow position:
               chr24:30965062-30964856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               153, 0
               

               Conread position:
               340-551
               

               Cow position:
               chr24:3163424-3163634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               340-551
               

               Cow position:
               chr24:3515574-3515370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               340-551
               

               Cow position:
               chr24:7596609-7596399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               206, 0
               

               Conread position:
               340-551
               

               Cow position:
               chr24:13178792-13178581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-551
               

               Cow position:
               chr24:15026489-15026278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-551
               

               Cow position:
               chr24:16993697-16993486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-551
               

               Cow position:
               chr24:17188318-17188107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-551
               

               Cow position:
               chr24:22047120-22046909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-551
               

               Cow position:
               chr24:25373056-25373267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               75, 79
               

               Conread position:
               340-551
               

               Cow position:
               chr24:28494697-28494908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-551
               

               Cow position:
               chr24:35877307-35877096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-551
               

               Cow position:
               chr24:43906812-43907019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               340-552
               

               Cow position:
               chr24:13354426-13354215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               199, 0
               

               Conread position:
               340-553
               

               Cow position:
               chr24:6067393-6067183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               340-553
               

               Cow position:
               chr24:6325418-6325205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-553
               

               Cow position:
               chr24:24818644-24818434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               129, 154
               

               Conread position:
               340-556
               

               Cow position:
               chr24:9901324-9901540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-559
               

               Cow position:
               chr24:274217-273998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-559
               

               Cow position:
               chr24:3006408-3006627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-561
               

               Cow position:
               chr24:13319501-13319281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               340-563
               

               Cow position:
               chr24:12696170-12695947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-563
               

               Cow position:
               chr24:13236223-13236445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               128, 60
               

               Conread position:
               340-563
               

               Cow position:
               chr24:14378549-14378336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               125, 46
               

               Conread position:
               340-564
               

               Cow position:
               chr24:36715172-36715397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               340-565
               

               Cow position:
               chr24:15666787-15666562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 192
               

               Conread position:
               340-565
               

               Cow position:
               chr24:30766497-30766721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               210, 40
               

               Conread position:
               340-565
               

               Cow position:
               chr24:37230018-37230241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               124, 168
               

               Conread position:
               340-565
               

               Cow position:
               chr24:39289639-39289856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               176
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               159, 130
               

               Conread position:
               340-566
               

               Cow position:
               chr24:228105-227879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               131, 28
               

               Conread position:
               340-566
               

               Cow position:
               chr24:3851548-3851774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-566
               

               Cow position:
               chr24:26413000-26413228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               186, 0
               

               Conread position:
               340-566
               

               Cow position:
               chr24:26846655-26846432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               6, 63
               

               Conread position:
               340-568
               

               Cow position:
               chr24:1840917-1840689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:4667034-4667261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               163, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:7986262-7986034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:8754469-8754697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:8776929-8777156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:9044743-9044515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:9365847-9365619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:11064492-11064700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:11080843-11080615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:11215434-11215206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:11311571-11311341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:12377163-12376936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               199, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:12447431-12447659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:12498623-12498845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:12518767-12518995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:12701131-12700903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:13042039-13041811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:13185742-13185515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               156, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:13492449-13492679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:13872408-13872636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:15810208-15809980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:15875007-15874779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:18222541-18222312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               198, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:22795509-22795733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:22954494-22954722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:25894460-25894688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               93, 79
               

               Conread position:
               340-568
               

               Cow position:
               chr24:27502962-27502742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               166, 124
               

               Conread position:
               340-568
               

               Cow position:
               chr24:28221344-28221116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:28832908-28832680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:32456051-32456277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               172
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:36308530-36308758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:36326311-36326539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               165
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:36710763-36710988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:38297010-38297238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:42693785-42693557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               166
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:42835434-42835662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               165
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               340-568
               

               Cow position:
               chr24:43693130-43692896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               172
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               78, 19
               

               Conread position:
               340-596
               

               Cow position:
               chr24:40974612-40974886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               76, 229
               

               Conread position:
               340-605
               

               Cow position:
               chr24:45216492-45216218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               198
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               70, 101
               

               Conread position:
               340-619
               

               Cow position:
               chr24:2993307-2993015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               118, 201
               

               Conread position:
               340-623
               

               Cow position:
               chr24:21104602-21104894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               213, 118
               

               Conread position:
               340-631
               

               Cow position:
               chr24:24137237-24136934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               223
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               70, 168
               

               Conread position:
               340-633
               

               Cow position:
               chr24:5608492-5608795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               176, 135
               

               Conread position:
               340-637
               

               Cow position:
               chr24:17720467-17720165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               205
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               209, 0
               

               Conread position:
               340-637
               

               Cow position:
               chr24:40518659-40518360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               81, 225
               

               Conread position:
               340-647
               

               Cow position:
               chr24:20970169-20969862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 193
               

               Conread position:
               340-648
               

               Cow position:
               chr24:14279510-14279831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 302
               

               Conread position:
               340-650
               

               Cow position:
               chr24:25524690-25524988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               225
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               52, 148
               

               Conread position:
               340-653
               

               Cow position:
               chr24:18075762-18076091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               340-653
               

               Cow position:
               chr24:27763425-27763734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 118
               

               Conread position:
               340-655
               

               Cow position:
               chr24:6019017-6018690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               230, 0
               

               Conread position:
               340-655
               

               Cow position:
               chr24:10035090-10034763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               213, 0
               

               Conread position:
               340-655
               

               Cow position:
               chr24:10655565-10655892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               230, 0
               

               Conread position:
               340-655
               

               Cow position:
               chr24:14363457-14363143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               129, 150
               

               Conread position:
               340-655
               

               Cow position:
               chr24:16475417-16475744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               224
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               230, 0
               

               Conread position:
               340-655
               

               Cow position:
               chr24:17251843-17251516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               213, 0
               

               Conread position:
               340-655
               

               Cow position:
               chr24:17456001-17456328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               213, 0
               

               Conread position:
               340-655
               

               Cow position:
               chr24:27185585-27185912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               213, 0
               

               Conread position:
               340-655
               

               Cow position:
               chr24:27760475-27760802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               230, 0
               

               Conread position:
               340-655
               

               Cow position:
               chr24:27852441-27852114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               213, 0
               

               Conread position:
               340-655
               

               Cow position:
               chr24:29097519-29097193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               219
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               213, 0
               

               Conread position:
               340-655
               

               Cow position:
               chr24:38488474-38488801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               212, 0
               

               Conread position:
               340-655
               

               Cow position:
               chr24:38896923-38896596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               230, 0
               

               Conread position:
               340-656
               

               Cow position:
               chr24:21264883-21264562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 106
               

               Conread position:
               340-657
               

               Cow position:
               chr24:16101363-16101663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               305, 48
               

               Conread position:
               340-657
               

               Cow position:
               chr24:29191237-29191560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               230, 131
               

               Conread position:
               340-658
               

               Cow position:
               chr24:27874225-27874550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 220
               

               Conread position:
               340-660
               

               Cow position:
               chr24:3631140-3631457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               193, 168
               

               Conread position:
               340-660
               

               Cow position:
               chr24:5929731-5930063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               223
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               230, 0
               

               Conread position:
               340-660
               

               Cow position:
               chr24:15472981-15473312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               238
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               189, 84
               

               Conread position:
               340-660
               

               Cow position:
               chr24:27720126-27719805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               231
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               193, 81
               

               Conread position:
               340-660
               

               Cow position:
               chr24:27809802-27810136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 330
               

               Conread position:
               340-661
               

               Cow position:
               chr24:35836612-35836294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               230, 85
               

               Conread position:
               340-662
               

               Cow position:
               chr24:14249629-14249293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               213, 0
               

               Conread position:
               340-662
               

               Cow position:
               chr24:16267399-16267731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 196
               

               Conread position:
               340-662
               

               Cow position:
               chr24:18257447-18257121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 136
               

               Conread position:
               340-662
               

               Cow position:
               chr24:28067389-28067699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               217
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               87, 134
               

               Conread position:
               340-662
               

               Cow position:
               chr24:29360355-29360041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               226
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               167, 118
               

               Conread position:
               340-662
               

               Cow position:
               chr24:36486441-36486106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               242
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               58, 128
               

               Conread position:
               340-662
               

               Cow position:
               chr24:39066909-39066573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               228
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               213, 0
               

               Conread position:
               340-664
               

               Cow position:
               chr24:27270419-27270740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               208, 54
               

               Conread position:
               340-665
               

               Cow position:
               chr24:599739-599403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               228
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               213, 176
               

               Conread position:
               340-665
               

               Cow position:
               chr24:25664753-25665080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               192, 144
               

               Conread position:
               340-665
               

               Cow position:
               chr24:35822974-35822633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               239
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               209, 0
               

               Conread position:
               340-665
               

               Cow position:
               chr24:40466460-40466126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               232
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               211, 310
               

               Conread position:
               340-667
               

               Cow position:
               chr24:38588731-38589066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               239
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               127, 136
               

               Conread position:
               340-670
               

               Cow position:
               chr24:11940987-11941325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               236
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               211, 187
               

               Conread position:
               340-670
               

               Cow position:
               chr24:16558060-16557720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 311
               

               Conread position:
               340-671
               

               Cow position:
               chr24:37246595-37246246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 0
               

               Conread position:
               340-672
               

               Cow position:
               chr24:6161222-6160890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               235
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               192, 90
               

               Conread position:
               340-673
               

               Cow position:
               chr24:17309480-17309153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               235
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               151, 183
               

               Conread position:
               340-673
               

               Cow position:
               chr24:19658170-19658522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               340-678
               

               Cow position:
               chr24:13173533-13173185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               94, 82
               

               Conread position:
               340-678
               

               Cow position:
               chr24:16541221-16540890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               230
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               211, 157
               

               Conread position:
               340-682
               

               Cow position:
               chr24:33238926-33238573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 273
               

               Conread position:
               340-689
               

               Cow position:
               chr24:4637466-4637113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               213, 48
               

               Conread position:
               340-689
               

               Cow position:
               chr24:15802767-15803130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               242
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               230, 0
               

               Conread position:
               340-689
               

               Cow position:
               chr24:40381884-40381529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               230, 40
               

               Conread position:
               340-703
               

               Cow position:
               chr24:25710085-25709699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               257
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               52, 326
               

               Conread position:
               340-705
               

               Cow position:
               chr24:28353782-28354147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 106
               

               Conread position:
               340-710
               

               Cow position:
               chr24:36555205-36554836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 118
               

               Conread position:
               340-716
               

               Cow position:
               chr24:2118824-2119206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               205, 299
               

               Conread position:
               340-716
               

               Cow position:
               chr24:6160461-6160086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               207, 147
               

               Conread position:
               340-716
               

               Cow position:
               chr24:18266543-18266159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 41
               

               Conread position:
               340-716
               

               Cow position:
               chr24:21210964-21210581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               256
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               213, 143
               

               Conread position:
               340-719
               

               Cow position:
               chr24:5990234-5989846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               251
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               211, 312
               

               Conread position:
               340-719
               

               Cow position:
               chr24:39219223-39218835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 118
               

               Conread position:
               340-720
               

               Cow position:
               chr24:11152303-11152689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               213, 283
               

               Conread position:
               340-720
               

               Cow position:
               chr24:11748180-11747804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 262
               

               Conread position:
               340-720
               

               Cow position:
               chr24:20221143-20221527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               253
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               201, 320
               

               Conread position:
               340-720
               

               Cow position:
               chr24:31067101-31066717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               255
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               201, 307
               

               Conread position:
               340-720
               

               Cow position:
               chr24:32360905-32360512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 313
               

               Conread position:
               340-722
               

               Cow position:
               chr24:12293647-12294037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               213, 311
               

               Conread position:
               340-725
               

               Cow position:
               chr24:14145933-14145540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               261
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               225, 106
               

               Conread position:
               340-725
               

               Cow position:
               chr24:36027561-36027167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               266
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               118, 97
               

               Conread position:
               340-725
               

               Cow position:
               chr24:37142261-37142654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               257
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               211, 315
               

               Conread position:
               340-725
               

               Cow position:
               chr24:40427738-40427352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               250
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               208, 113
               

               Conread position:
               340-728
               

               Cow position:
               chr24:36268624-36269018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               212, 172
               

               Conread position:
               340-728
               

               Cow position:
               chr24:40280774-40280380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               254
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               220, 131
               

               Conread position:
               340-729
               

               Cow position:
               chr24:27052868-27052478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 70
               

               Conread position:
               340-731
               

               Cow position:
               chr24:7917746-7917343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 127
               

               Conread position:
               340-731
               

               Cow position:
               chr24:30870020-30869632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               266
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               138, 78
               

               Conread position:
               340-745
               

               Cow position:
               chr24:23051948-23051536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               271
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               211, 143
               

               Conread position:
               340-750
               

               Cow position:
               chr24:207052-206637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               275
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               213, 128
               

               Conread position:
               340-750
               

               Cow position:
               chr24:20024229-20024650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 336
               

               Conread position:
               340-750
               

               Cow position:
               chr24:29788335-29787917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               277
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               213, 272
               

               Conread position:
               340-751
               

               Cow position:
               chr24:193040-193456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               280
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               202, 308
               

               Conread position:
               340-751
               

               Cow position:
               chr24:6020125-6019708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               274
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               180, 176
               

               Conread position:
               340-751
               

               Cow position:
               chr24:6085549-6085968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               273
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               225, 311
               

               Conread position:
               340-751
               

               Cow position:
               chr24:6090940-6091359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               274
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               213, 310
               

               Conread position:
               340-751
               

               Cow position:
               chr24:7782177-7781758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               279
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               213, 311
               

               Conread position:
               340-751
               

               Cow position:
               chr24:8331555-8331136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               276
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               213, 311
               

               Conread position:
               340-751
               

               Cow position:
               chr24:11104198-11103776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               275
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               198, 330
               

               Conread position:
               340-751
               

               Cow position:
               chr24:15297069-15297487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               275
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               22, 310
               

               Conread position:
               340-751
               

               Cow position:
               chr24:17161024-17160607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               279
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               213, 311
               

               Conread position:
               340-751
               

               Cow position:
               chr24:20604703-20605120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               278
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               217, 311
               

               Conread position:
               340-751
               

               Cow position:
               chr24:35793802-35794222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               276
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               127, 136
               

               Conread position:
               340-753
               

               Cow position:
               chr24:13304547-13304132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               269
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               165, 150
               

               Conread position:
               340-754
               

               Cow position:
               chr24:7001446-7001028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 278
               

               Conread position:
               340-755
               

               Cow position:
               chr24:4241074-4240653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               284
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               211, 310
               

               Conread position:
               340-755
               

               Cow position:
               chr24:12090925-12091346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 314
               

               Conread position:
               340-755
               

               Cow position:
               chr24:17993051-17992628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               277
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               220, 143
               

               Conread position:
               340-755
               

               Cow position:
               chr24:18113410-18113833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               286
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               81, 73
               

               Conread position:
               340-755
               

               Cow position:
               chr24:19837121-19837542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               283
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               180, 176
               

               Conread position:
               340-755
               

               Cow position:
               chr24:19886180-19886601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               283
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               180, 176
               

               Conread position:
               340-755
               

               Cow position:
               chr24:20283259-20282862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               271
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               136, 77
               

               Conread position:
               340-755
               

               Cow position:
               chr24:20368515-20368939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               281
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               213, 313
               

               Conread position:
               340-755
               

               Cow position:
               chr24:21770073-21770482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 210
               

               Conread position:
               340-755
               

               Cow position:
               chr24:23616318-23616738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 118
               

               Conread position:
               340-755
               

               Cow position:
               chr24:31302644-31303056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               277
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               82, 24
               

               Conread position:
               340-755
               

               Cow position:
               chr24:39900694-39900280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               266
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               138, 20
               

               Conread position:
               340-755
               

               Cow position:
               chr24:40035141-40034720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               277
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               198, 309
               

               Conread position:
               340-755
               

               Cow position:
               chr24:41006472-41006895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               280
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               208, 26
               

               Conread position:
               340-757
               

               Cow position:
               chr24:16870163-16869739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               283
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               199, 306
               

               Conread position:
               340-758
               

               Cow position:
               chr24:6141333-6140906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 147
               

               Conread position:
               340-760
               

               Cow position:
               chr24:22975759-22976184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               289
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               211, 284
               

               Conread position:
               340-763
               

               Cow position:
               chr24:32854161-32854598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               295
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               211, 360
               

               Conread position:
               340-764
               

               Cow position:
               chr24:2391814-2392237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 262
               

               Conread position:
               340-764
               

               Cow position:
               chr24:6157676-6157239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               279
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               185, 290
               

               Conread position:
               340-764
               

               Cow position:
               chr24:6436415-6436845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               285
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               208, 189
               

               Conread position:
               340-766
               

               Cow position:
               chr24:29180524-29180939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 118
               

               Conread position:
               340-768
               

               Cow position:
               chr24:3794443-3794865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               247
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               201, 16
               

               Conread position:
               340-768
               

               Cow position:
               chr24:5931493-5931924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               279
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               193, 167
               

               Conread position:
               340-768
               

               Cow position:
               chr24:29083705-29083268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               279
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               101, 147
               

               Conread position:
               340-790
               

               Cow position:
               chr24:32370288-32369838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 191
               

               Conread position:
               340-793
               

               Cow position:
               chr24:30860251-30860715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               303
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               85, 134
               

               Conread position:
               340-796
               

               Cow position:
               chr24:14337353-14337820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               296
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               73, 99
               

               Conread position:
               340-803
               

               Cow position:
               chr24:814639-814180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 80
               

               Conread position:
               340-803
               

               Cow position:
               chr24:24250347-24250812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 369
               

               Conread position:
               340-803
               

               Cow position:
               chr24:29170599-29171051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 78
               

               Conread position:
               340-816
               

               Cow position:
               chr24:11118912-11119378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 63
               

               Conread position:
               340-824
               

               Cow position:
               chr24:29673142-29673629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 333
               

               Conread position:
               340-824
               

               Cow position:
               chr24:39159921-39159441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 152
               

               Conread position:
               340-827
               

               Cow position:
               chr24:25677656-25678135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 45
               

               Conread position:
               340-828
               

               Cow position:
               chr24:17955812-17955332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 90
               

               Conread position:
               340-846
               

               Cow position:
               chr24:39440934-39440435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 71
               

               Conread position:
               340-879
               

               Cow position:
               chr24:18741946-18741402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 60
               

               Conread position:
               340-883
               

               Cow position:
               chr24:6071221-6071756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               557
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 80
               

               Conread position:
               340-886
               

               Cow position:
               chr24:18374414-18374934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               559
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 46
               

               Conread position:
               340-891
               

               Cow position:
               chr24:211604-212145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 322
               

               Conread position:
               340-891
               

               Cow position:
               chr24:2674955-2675511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               571
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 48
               

               Conread position:
               340-891
               

               Cow position:
               chr24:27149030-27149557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               559
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 96
               

               Conread position:
               340-891
               

               Cow position:
               chr24:27844897-27844358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 196
               

               Conread position:
               340-891
               

               Cow position:
               chr24:27906051-27906613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 271
               

               Conread position:
               340-891
               

               Cow position:
               chr24:28062569-28063125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 67
               

               Conread position:
               340-891
               

               Cow position:
               chr24:28721503-28722052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 151
               

               Conread position:
               340-891
               

               Cow position:
               chr24:30235501-30236047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               560
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               239, 130
               

               Conread position:
               340-891
               

               Cow position:
               chr24:44987750-44987197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 24
               

               Conread position:
               340-895
               

               Cow position:
               chr24:33098864-33098292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               576
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 96
               

               Conread position:
               340-896
               

               Cow position:
               chr24:5141556-5142117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               577
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 135
               

               Conread position:
               340-896
               

               Cow position:
               chr24:28303727-28303183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 128
               

               Conread position:
               340-896
               

               Cow position:
               chr24:30484311-30483763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               568
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 83
               

               Conread position:
               340-896
               

               Cow position:
               chr24:32054294-32054824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               558
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 212
               

               Conread position:
               340-896
               

               Cow position:
               chr24:32359195-32358637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               367
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               211, 106
               

               Conread position:
               340-896
               

               Cow position:
               chr24:33230289-33230872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               595
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 96
               

               Conread position:
               340-897
               

               Cow position:
               chr24:3165448-3166000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 57
               

               Conread position:
               340-897
               

               Cow position:
               chr24:38814597-38815156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               568
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 80
               

               Conread position:
               340-898
               

               Cow position:
               chr24:19466310-19465726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               589
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 139
               

               Conread position:
               340-899
               

               Cow position:
               chr24:31811810-31812368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 86
               

               Conread position:
               340-899
               

               Cow position:
               chr24:36780370-36780927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               571
               

               Alignm identity:
               322
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               190, 130
               

               Conread position:
               340-900
               

               Cow position:
               chr24:3493518-3494063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 16
               

               Conread position:
               340-900
               

               Cow position:
               chr24:11839803-11840368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 96
               

               Conread position:
               340-900
               

               Cow position:
               chr24:18485377-18484806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               576
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 216
               

               Conread position:
               340-900
               

               Cow position:
               chr24:32739989-32739414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               586
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 153
               

               Conread position:
               341-521
               

               Cow position:
               chr24:17980842-17981018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               341-532
               

               Cow position:
               chr24:23715911-23715726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               341-538
               

               Cow position:
               chr24:6080426-6080623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               137, 126
               

               Conread position:
               341-539
               

               Cow position:
               chr24:39977176-39976985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               132, 0
               

               Conread position:
               341-549
               

               Cow position:
               chr24:5624599-5624400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               150
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               341-549
               

               Cow position:
               chr24:39217001-39216793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               179, 175
               

               Conread position:
               341-551
               

               Cow position:
               chr24:10311787-10312005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               341-551
               

               Cow position:
               chr24:16654050-16653839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               128, 138
               

               Conread position:
               341-562
               

               Cow position:
               chr24:33639543-33639323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               128, 140
               

               Conread position:
               341-563
               

               Cow position:
               chr24:14320032-14319809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               88, 119
               

               Conread position:
               341-568
               

               Cow position:
               chr24:6341794-6342021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               123, 15
               

               Conread position:
               341-568
               

               Cow position:
               chr24:37975445-37975224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               341-622
               

               Cow position:
               chr24:20923226-20923498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               210
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               206, 79
               

               Conread position:
               341-662
               

               Cow position:
               chr24:5607510-5607186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               198, 39
               

               Conread position:
               341-662
               

               Cow position:
               chr24:27543852-27543526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 307
               

               Conread position:
               341-663
               

               Cow position:
               chr24:12697459-12697125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               224
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               216, 0
               

               Conread position:
               341-670
               

               Cow position:
               chr24:9550213-9550552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               232
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               210, 310
               

               Conread position:
               341-678
               

               Cow position:
               chr24:6340641-6340979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 189
               

               Conread position:
               341-720
               

               Cow position:
               chr24:13880680-13881067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               255
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               212, 310
               

               Conread position:
               341-723
               

               Cow position:
               chr24:10308902-10309267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               265
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               157, 27
               

               Conread position:
               341-728
               

               Cow position:
               chr24:12577635-12578022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               212, 29
               

               Conread position:
               341-731
               

               Cow position:
               chr24:34213610-34213210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               276
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               88, 178
               

               Conread position:
               341-752
               

               Cow position:
               chr24:40149444-40149043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               270
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               40, 27
               

               Conread position:
               341-752
               

               Cow position:
               chr24:43506889-43506471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 95
               

               Conread position:
               341-754
               

               Cow position:
               chr24:37546686-37547109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               270
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               207, 282
               

               Conread position:
               341-768
               

               Cow position:
               chr24:25706208-25705761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               292
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               341-779
               

               Cow position:
               chr24:41985590-41986061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               320
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               82, 325
               

               Conread position:
               341-820
               

               Cow position:
               chr24:29064019-29063554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 79
               

               Conread position:
               341-825
               

               Cow position:
               chr24:33153412-33153885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 41
               

               Conread position:
               341-880
               

               Cow position:
               chr24:13625913-13626450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               558
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 144
               

               Conread position:
               341-882
               

               Cow position:
               chr24:17104940-17104406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               547
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 78
               

               Conread position:
               341-882
               

               Cow position:
               chr24:39483100-39483629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               397
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 107
               

               Conread position:
               341-891
               

               Cow position:
               chr24:11005287-11005848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               571
               

               Alignm identity:
               356
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               210, 40
               

               Conread position:
               341-894
               

               Cow position:
               chr24:33372186-33372724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 65
               

               Conread position:
               341-896
               

               Cow position:
               chr24:19475743-19476295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               367
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               192, 40
               

               Conread position:
               341-897
               

               Cow position:
               chr24:32693329-32693902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               581
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 79
               

               Conread position:
               341-897
               

               Cow position:
               chr24:42102994-42103542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 111
               

               Conread position:
               341-900
               

               Cow position:
               chr24:32205172-32204601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               577
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 323
               

               Conread position:
               342-467
               

               Cow position:
               chr24:5862034-5862163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               101
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               342-545
               

               Cow position:
               chr24:35503026-35502828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               342-548
               

               Cow position:
               chr24:5448441-5448235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               158
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-551
               

               Cow position:
               chr24:15674678-15674469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-568
               

               Cow position:
               chr24:11080254-11080028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-617
               

               Cow position:
               chr24:12448020-12448295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-664
               

               Cow position:
               chr24:1272245-1271921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               229
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               30, 58
               

               Conread position:
               342-664
               

               Cow position:
               chr24:32405427-32405093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               208, 263
               

               Conread position:
               342-723
               

               Cow position:
               chr24:16298388-16298767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               257
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               208, 65
               

               Conread position:
               342-755
               

               Cow position:
               chr24:30768343-30768755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               283
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               161, 63
               

               Conread position:
               342-769
               

               Cow position:
               chr24:39681495-39681907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               289
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               189, 65
               

               Conread position:
               342-771
               

               Cow position:
               chr24:12348689-12349121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               284
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               126, 104
               

               Conread position:
               342-794
               

               Cow position:
               chr24:31323913-31324365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 74
               

               Conread position:
               342-875
               

               Cow position:
               chr24:44041381-44040852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 65
               

               Conread position:
               342-879
               

               Cow position:
               chr24:23556703-23556174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               549
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 65
               

               Conread position:
               342-890
               

               Cow position:
               chr24:32609263-32609823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 132
               

               Conread position:
               342-891
               

               Cow position:
               chr24:35675184-35675706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               559
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 71
               

               Conread position:
               342-897
               

               Cow position:
               chr24:33621861-33621296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               256, 212
               

               Conread position:
               343-557
               

               Cow position:
               chr24:8021201-8021417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               167
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               32, 104
               

               Conread position:
               343-881
               

               Cow position:
               chr24:25320619-25321150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 9
               

               Conread position:
               345-889
               

               Cow position:
               chr24:11045919-11045385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 75
               

               Conread position:
               346-537
               

               Cow position:
               chr24:38479335-38479148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               346-546
               

               Cow position:
               chr24:12504021-12504222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               346-673
               

               Cow position:
               chr24:32014754-32015078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               226
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               114, 18
               

               Conread position:
               346-677
               

               Cow position:
               chr24:8873439-8873105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               233
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               123, 300
               

               Conread position:
               346-683
               

               Cow position:
               chr24:39492926-39493267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 67
               

               Conread position:
               347-496
               

               Cow position:
               chr24:38444490-38444639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               107
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               347-568
               

               Cow position:
               chr24:11874994-11874786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               347-568
               

               Cow position:
               chr24:40249639-40249860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               347-667
               

               Cow position:
               chr24:37205246-37204920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               227
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               185, 96
               

               Conread position:
               347-667
               

               Cow position:
               chr24:43733601-43733928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               233
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               184, 33
               

               Conread position:
               347-743
               

               Cow position:
               chr24:11734366-11734753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 82
               

               Conread position:
               347-752
               

               Cow position:
               chr24:38684473-38684063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               276
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               119, 123
               

               Conread position:
               347-793
               

               Cow position:
               chr24:43363990-43364438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 29
               

               Conread position:
               347-875
               

               Cow position:
               chr24:20874310-20874839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 51
               

               Conread position:
               349-568
               

               Cow position:
               chr24:15288489-15288708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               350-544
               

               Cow position:
               chr24:37037247-37037443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               50, 116
               

               Conread position:
               350-549
               

               Cow position:
               chr24:11327319-11327519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               350-549
               

               Cow position:
               chr24:40781945-40781746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               350-551
               

               Cow position:
               chr24:40247469-40247667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               350-565
               

               Cow position:
               chr24:16143512-16143727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               350-568
               

               Cow position:
               chr24:27229412-27229203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               350-568
               

               Cow position:
               chr24:33571633-33571851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               350-568
               

               Cow position:
               chr24:33573466-33573248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               350-610
               

               Cow position:
               chr24:6956817-6957078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               114, 57
               

               Conread position:
               350-639
               

               Cow position:
               chr24:11006847-11007149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               215
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               350-662
               

               Cow position:
               chr24:1861934-1861608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               220, 0
               

               Conread position:
               350-670
               

               Cow position:
               chr24:7030510-7030196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               226, 67
               

               Conread position:
               350-720
               

               Cow position:
               chr24:18405671-18405303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 112
               

               Conread position:
               350-728
               

               Cow position:
               chr24:40259780-40260166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               202, 301
               

               Conread position:
               350-794
               

               Cow position:
               chr24:44054509-44054087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 0
               

               Conread position:
               350-820
               

               Cow position:
               chr24:32158634-32158170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               307
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               220, 88
               

               Conread position:
               350-882
               

               Cow position:
               chr24:28496955-28496417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               546
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 113
               

               Conread position:
               350-889
               

               Cow position:
               chr24:33944026-33944579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 176
               

               Conread position:
               350-891
               

               Cow position:
               chr24:2402744-2402202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 117
               

               Conread position:
               350-900
               

               Cow position:
               chr24:11886795-11887336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 99
               

               Conread position:
               351-568
               

               Cow position:
               chr24:20749211-20749428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               55, 78
               

               Conread position:
               351-637
               

               Cow position:
               chr24:42916894-42916607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               211, 111
               

               Conread position:
               351-693
               

               Cow position:
               chr24:11876518-11876868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 38
               

               Conread position:
               352-751
               

               Cow position:
               chr24:6921740-6922147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               263
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               218, 299
               

               Conread position:
               354-558
               

               Cow position:
               chr24:8184056-8184253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               147
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               354-565
               

               Cow position:
               chr24:33774552-33774349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               354-568
               

               Cow position:
               chr24:30262964-30263174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               178, 0
               

               Conread position:
               354-725
               

               Cow position:
               chr24:634627-634988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               255
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               186, 104
               

               Conread position:
               354-728
               

               Cow position:
               chr24:41206746-41206369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               187, 253
               

               Conread position:
               354-891
               

               Cow position:
               chr24:24491373-24490851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 64
               

               Conread position:
               355-541
               

               Cow position:
               chr24:185175-184990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               355-568
               

               Cow position:
               chr24:24862145-24862354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               356-768
               

               Cow position:
               chr24:19707209-19707622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               279
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               197, 57
               

               Conread position:
               356-771
               

               Cow position:
               chr24:9590376-9589951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               274
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               184, 68
               

               Conread position:
               357-661
               

               Cow position:
               chr24:17412383-17412693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               217
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               196, 49
               

               Conread position:
               357-720
               

               Cow position:
               chr24:3214397-3214762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               240
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               196, 49
               

               Conread position:
               357-826
               

               Cow position:
               chr24:29679671-29679199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 23
               

               Conread position:
               357-891
               

               Cow position:
               chr24:15057031-15057559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 104
               

               Conread position:
               358-546
               

               Cow position:
               chr24:5643941-5643751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               358-655
               

               Cow position:
               chr24:27688111-27687802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               195, 0
               

               Conread position:
               358-662
               

               Cow position:
               chr24:29027693-29027996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               190, 67
               

               Conread position:
               358-824
               

               Cow position:
               chr24:27290521-27290982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 62
               

               Conread position:
               358-897
               

               Cow position:
               chr24:42862298-42862808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               352
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               101, 48
               

               Conread position:
               361-565
               

               Cow position:
               chr24:28911326-28911523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               362-639
               

               Cow position:
               chr24:38374933-38375214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 63
               

               Conread position:
               362-715
               

               Cow position:
               chr24:27197325-27196964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               191, 289
               

               Conread position:
               363-568
               

               Cow position:
               chr24:4228266-4228471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               363-639
               

               Cow position:
               chr24:21252804-21252519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               204
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               206, 250
               

               Conread position:
               363-797
               

               Cow position:
               chr24:33724219-33723761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 330
               

               Conread position:
               363-875
               

               Cow position:
               chr24:27267284-27267772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 57
               

               Conread position:
               363-891
               

               Cow position:
               chr24:20225383-20225919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 278
               

               Conread position:
               363-900
               

               Cow position:
               chr24:34532769-34533321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               359
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               207, 281
               

               Conread position:
               364-606
               

               Cow position:
               chr24:36853866-36854104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               191, 0
               

               Conread position:
               367-643
               

               Cow position:
               chr24:7301108-7301394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               151, 36
               

               Conread position:
               374-545
               

               Cow position:
               chr24:44701062-44700891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               374-549
               

               Cow position:
               chr24:19444377-19444203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               374-551
               

               Cow position:
               chr24:9616316-9616139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               125
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               374-563
               

               Cow position:
               chr24:13195832-13196021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               374-568
               

               Cow position:
               chr24:2226443-2226249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               104, 94
               

               Conread position:
               374-568
               

               Cow position:
               chr24:24107532-24107338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               374-568
               

               Cow position:
               chr24:30892906-30892706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               46, 81
               

               Conread position:
               374-662
               

               Cow position:
               chr24:5435385-5435090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               17, 47
               

               Conread position:
               374-665
               

               Cow position:
               chr24:26385000-26384696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               95, 102
               

               Conread position:
               374-796
               

               Cow position:
               chr24:3430379-3430820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 159
               

               Conread position:
               374-828
               

               Cow position:
               chr24:5754498-5754948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 139
               

               Conread position:
               374-891
               

               Cow position:
               chr24:38347336-38347851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 283
               

               Conread position:
               376-676
               

               Cow position:
               chr24:31370089-31369787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               213
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               167, 271
               

               Conread position:
               377-511
               

               Cow position:
               chr24:16645946-16645812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               103
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               377-544
               

               Cow position:
               chr24:28662908-28662742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               124
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               115, 154
               

               Conread position:
               377-548
               

               Cow position:
               chr24:18847567-18847729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               377-568
               

               Cow position:
               chr24:28233050-28233239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               153
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               43, 61
               

               Conread position:
               377-661
               

               Cow position:
               chr24:39123523-39123814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               193
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               40, 115
               

               Conread position:
               377-661
               

               Cow position:
               chr24:40091908-40091621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               80, 30
               

               Conread position:
               377-891
               

               Cow position:
               chr24:34272462-34272994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 273
               

               Conread position:
               377-896
               

               Cow position:
               chr24:15692681-15693202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               538
               

               Alignm identity:
               346
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               101, 11
               

               Conread position:
               379-804
               

               Cow position:
               chr24:28319544-28319118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 232
               

               Conread position:
               380-651
               

               Cow position:
               chr24:28029055-28028766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               40, 105
               

               Conread position:
               380-657
               

               Cow position:
               chr24:24498509-24498224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               165, 0
               

               Conread position:
               380-726
               

               Cow position:
               chr24:35795620-35795266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               242
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               79, 271
               
UCSC Genome Browser
               Conread position:
               380-751
               

               Cow position:
               chr24:12957057-12956682 (view  custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               242
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               154, 271
               
UCSC Genome Browser
               
               
               
Conread position: 380-755

               
               
               
Cow position: chr24:17159417-17159792 (view  custom track)

               
               
               
Alignm length: 389

               
               
               
Alignm identity: 261

               
               
               
Alignm E-value: 2e-37

               
               
               
Alignm gaps (pig, cow): 185, 48
UCSC Genome Browser
               
               
               
Conread position: 380-880

               
               
               
Cow position: chr24:43028669-43028164 (view  custom track)

               
               
               
Alignm length: 515

               
               
               
Alignm identity: 363

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 50, 248

               
               
               Conread position:381-568
               
               
               Cow position:chr24:33338049-33337862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:381-621
               
               
               Cow position:chr24:41457874-41458105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 23

               
               
               Conread position:381-768
               
               
               Cow position:chr24:6110635-6110246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):171, 39

               
               
               Conread position:382-634
               
               
               Cow position:chr24:27465900-27465653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):75, 25

               
               
               Conread position:382-796
               
               
               Cow position:chr24:15508878-15508461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:385-568
               
               
               Cow position:chr24:27675115-27675298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:385-900
               
               
               Cow position:chr24:20988332-20987840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 118

               
               
               Conread position:385-900
               
               
               Cow position:chr24:40300824-40301347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:386-568
               
               
               Cow position:chr24:20894815-20894995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):83, 5

               
               
               Conread position:386-653
               
               
               Cow position:chr24:37876906-37877177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):114, 57

               
               
               Conread position:386-890
               
               
               Cow position:chr24:17311540-17311054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 217

               
               
               Conread position:387-706
               
               
               Cow position:chr24:34315029-34315349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):158, 37

               
               
               Conread position:389-638
               
               
               Cow position:chr24:18734688-18734423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:392-663
               
               
               Cow position:chr24:40908691-40908973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):178, 118

               
               
               Conread position:392-804
               
               
               Cow position:chr24:15246958-15246552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 28

               
               
               Conread position:392-882
               
               
               Cow position:chr24:36174108-36173613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 221

               
               
               Conread position:393-714
               
               
               Cow position:chr24:42007422-42007741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 70

               
               
               Conread position:393-895
               
               
               Cow position:chr24:26929273-26928761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 270

               
               
               Conread position:394-553
               
               
               Cow position:chr24:20173149-20172990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:397-555
               
               
               Cow position:chr24:25777568-25777408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:397-823
               
               
               Cow position:chr24:18970808-18970399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 31

               
               
               Conread position:397-880
               
               
               Cow position:chr24:9222696-9222216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 214

               
               
               Conread position:398-764
               
               
               Cow position:chr24:27341343-27340968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 276

               
               
               Conread position:398-863
               
               
               Cow position:chr24:29781843-29782311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 65

               
               
               Conread position:399-568
               
               
               Cow position:chr24:5998902-5998733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:400-755
               
               
               Cow position:chr24:39842166-39841807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):52, 81

               
               
               Conread position:400-880
               
               
               Cow position:chr24:20741005-20741505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 155

               
               
               Conread position:402-680
               
               
               Cow position:chr24:8770272-8770552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):133, 18

               
               
               Conread position:403-720
               
               
               Cow position:chr24:30177922-30178248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 115

               
               
               Conread position:403-900
               
               
               Cow position:chr24:15861911-15861406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 35

               
               
               Conread position:404-685
               
               
               Cow position:chr24:6914074-6913791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:407-568
               
               
               Cow position:chr24:14550192-14550355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 150

               
               
               Conread position:407-670
               
               
               Cow position:chr24:27274912-27275183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):133, 244

               
               
               Conread position:407-897
               
               
               Cow position:chr24:35332409-35332910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:325
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:408-764
               
               
               Cow position:chr24:44808936-44809301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):143, 28

               
               
               Conread position:409-819
               
               
               Cow position:chr24:43683765-43683359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 63

               
               
               Conread position:410-838
               
               
               Cow position:chr24:32124949-32124519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:412-897
               
               
               Cow position:chr24:42345313-42344817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:330
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):158, 31

               
               
               Conread position:413-630
               
               
               Cow position:chr24:28600914-28600695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 12

               
               
               Conread position:413-748
               
               
               Cow position:chr24:34274457-34274791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):147, 94

               
               
               Conread position:413-825
               
               
               Cow position:chr24:31159325-31159723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 7

               
               
               Conread position:414-547
               
               
               Cow position:chr24:34579182-34579315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:414-568
               
               
               Cow position:chr24:5106494-5106647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:414-708
               
               
               Cow position:chr24:6154521-6154805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):205, 116

               
               
               Conread position:416-761
               
               
               Cow position:chr24:45004654-45004995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 35

               
               
               Conread position:416-891
               
               
               Cow position:chr24:28699294-28699760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:326
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):185, 33

               
               
               Conread position:418-897
               
               
               Cow position:chr24:19535543-19535070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 58

               
               
               Conread position:419-793
               
               
               Cow position:chr24:34369305-34368927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:252
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):7, 55

               
               
               Conread position:419-900
               
               
               Cow position:chr24:17860548-17860076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 7

               
               
               Conread position:420-565
               
               
               Cow position:chr24:19519-19379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:420-565
               
               
               Cow position:chr24:15639198-15639053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):5, 48

               
               
               Conread position:420-565
               
               
               Cow position:chr24:19804390-19804535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:420-665
               
               
               Cow position:chr24:21093757-21093511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):83, 5

               
               
               Conread position:420-705
               
               
               Cow position:chr24:35405868-35405572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):93, 237

               
               
               Conread position:421-678
               
               
               Cow position:chr24:27558001-27557738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):50, 55

               
               
               Conread position:422-663
               
               
               Cow position:chr24:21768347-21768601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:423-772
               
               
               Cow position:chr24:7377390-7377039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):132, 223

               
               
               Conread position:424-815
               
               
               Cow position:chr24:43432509-43432888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:424-824
               
               
               Cow position:chr24:41067976-41068374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):94, 27

               
               
               Conread position:425-540
               
               
               Cow position:chr24:33052364-33052249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:425-689
               
               
               Cow position:chr24:22433338-22433614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 248

               
               
               Conread position:425-720
               
               
               Cow position:chr24:35795033-35794728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 202

               
               
               Conread position:425-772
               
               
               Cow position:chr24:18974909-18975269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):110, 50

               
               
               Conread position:425-803
               
               
               Cow position:chr24:7079499-7079873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):142, 30

               
               
               Conread position:425-820
               
               
               Cow position:chr24:18331444-18331825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 99

               
               
               Conread position:425-824
               
               
               Cow position:chr24:16556923-16556531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:426-565
               
               
               Cow position:chr24:7023103-7023242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:426-569
               
               
               Cow position:chr24:6677211-6677349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:426-623
               
               
               Cow position:chr24:39607845-39607647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):153, 108

               
               
               Conread position:426-657
               
               
               Cow position:chr24:33255943-33256169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):132, 12

               
               
               Conread position:426-663
               
               
               Cow position:chr24:40184332-40184578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:426-666
               
               
               Cow position:chr24:39258873-39259116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):69, 107

               
               
               Conread position:426-667
               
               
               Cow position:chr24:37074912-37074686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 94

               
               
               Conread position:426-670
               
               
               Cow position:chr24:23685354-23685108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):7, 108

               
               
               Conread position:426-703
               
               
               Cow position:chr24:27633122-27633400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):160, 108

               
               
               Conread position:426-762
               
               
               Cow position:chr24:30545146-30544817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 15

               
               
               Conread position:426-769
               
               
               Cow position:chr24:6508054-6507715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):144, 37

               
               
               Conread position:426-769
               
               
               Cow position:chr24:32759061-32758706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):56, 254

               
               
               Conread position:426-769
               
               
               Cow position:chr24:39350499-39350160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 91

               
               
               Conread position:426-801
               
               
               Cow position:chr24:8886623-8886998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):10, 98

               
               
               Conread position:426-804
               
               
               Cow position:chr24:1438558-1438180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:426-804
               
               
               Cow position:chr24:34396448-34396088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):122, 30

               
               
               Conread position:426-808
               
               
               Cow position:chr24:16268394-16268036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):98, 37

               
               
               Conread position:426-877
               
               
               Cow position:chr24:31816294-31816736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 173

               
               
               Conread position:426-880
               
               
               Cow position:chr24:27096395-27096855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:315
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):117, 17

               
               
               Conread position:426-882
               
               
               Cow position:chr24:35150239-35150699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 40

               
               
               Conread position:426-884
               
               
               Cow position:chr24:44702687-44703131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:307
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):100, 37

               
               
               Conread position:426-891
               
               
               Cow position:chr24:34742458-34742924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 27

               
               
               Conread position:426-893
               
               
               Cow position:chr24:23695186-23694734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 24

               
               
               Conread position:426-900
               
               
               Cow position:chr24:40592429-40592895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:331
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:427-564
               
               
               Cow position:chr24:28289720-28289586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 94

               
               
               Conread position:427-668
               
               
               Cow position:chr24:27941296-27941048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 10

               
               
               Conread position:428-599
               
               
               Cow position:chr24:8591049-8591220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):146, 36

               
               
               Conread position:428-614
               
               
               Cow position:chr24:2730859-2730665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:428-656
               
               
               Cow position:chr24:30900516-30900283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):90, 19

               
               
               Conread position:428-661
               
               
               Cow position:chr24:25991434-25991209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):117, 30

               
               
               Conread position:428-825
               
               
               Cow position:chr24:40206787-40207185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:282
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):224, 104

               
               
               Conread position:428-825
               
               
               Cow position:chr24:43200563-43200164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 175

               
               
               Conread position:428-897
               
               
               Cow position:chr24:34761607-34762077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:316
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 21

               
               
               Conread position:429-882
               
               
               Cow position:chr24:25111914-25112362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):112, 219

               
               
               Conread position:430-565
               
               
               Cow position:chr24:39955333-39955198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:430-671
               
               
               Cow position:chr24:43176211-43176445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):215, 52

               
               
               Conread position:430-891
               
               
               Cow position:chr24:28699770-28700218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:321
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):29, 38

               
               
               Conread position:430-898
               
               
               Cow position:chr24:27726291-27725827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 110

               
               
               Conread position:431-647
               
               
               Cow position:chr24:18324328-18324559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:431-880
               
               
               Cow position:chr24:35073806-35074246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:279
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):103, 232

               
               
               Conread position:432-900
               
               
               Cow position:chr24:30229181-30229659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 123

               
               
               Conread position:433-685
               
               
               Cow position:chr24:5151950-5152208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:433-723
               
               
               Cow position:chr24:17567106-17567393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):103, 89

               
               
               Conread position:433-787
               
               
               Cow position:chr24:18243749-18243393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):108, 82

               
               
               Conread position:433-879
               
               
               Cow position:chr24:17294471-17294032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 125

               
               
               Conread position:433-889
               
               
               Cow position:chr24:25885442-25884975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 102

               
               
               Conread position:433-894
               
               
               Cow position:chr24:43370963-43371421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 223

               
               
               Conread position:434-862
               
               
               Cow position:chr24:20942894-20943306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:297
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):121, 35

               
               
               Conread position:435-897
               
               
               Cow position:chr24:7913716-7914190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 222

               
               
               Conread position:436-568
               
               
               Cow position:chr24:20594349-20594217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:436-836
               
               
               Cow position:chr24:2108533-2108121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 225

               
               
               Conread position:436-897
               
               
               Cow position:chr24:1269523-1269958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:437-628
               
               
               Cow position:chr24:21522819-21523019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):114, 186

               
               
               Conread position:437-664
               
               
               Cow position:chr24:6900544-6900783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):95, 165

               
               
               Conread position:437-688
               
               
               Cow position:chr24:21860501-21860247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:438-679
               
               
               Cow position:chr24:25424784-25425028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):110, 167

               
               
               Conread position:438-817
               
               
               Cow position:chr24:27748375-27748743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:259
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):110, 30

               
               
               Conread position:438-824
               
               
               Cow position:chr24:40849885-40850262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):96, 30

               
               
               Conread position:440-706
               
               
               Cow position:chr24:27967803-27968077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):105, 161

               
               
               Conread position:440-757
               
               
               Cow position:chr24:36404424-36404098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 32

               
               
               Conread position:440-880
               
               
               Cow position:chr24:30314313-30313865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 212

               
               
               Conread position:441-825
               
               
               Cow position:chr24:19769222-19769603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 76

               
               
               Conread position:442-796
               
               
               Cow position:chr24:41755591-41755945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:252
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:443-653
               
               
               Cow position:chr24:35529649-35529864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):126, 88

               
               
               Conread position:443-655
               
               
               Cow position:chr24:42380976-42380766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):127, 39

               
               
               Conread position:443-709
               
               
               Cow position:chr24:17363919-17363652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):82, 24

               
               
               Conread position:443-824
               
               
               Cow position:chr24:18390562-18390192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):91, 28

               
               
               Conread position:444-753
               
               
               Cow position:chr24:23442854-23442541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):99, 63

               
               
               Conread position:444-889
               
               
               Cow position:chr24:24755182-24755602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:446-664
               
               
               Cow position:chr24:12992784-12993009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):124, 215

               
               
               Conread position:447-891
               
               
               Cow position:chr24:16994624-16995053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 25

               
               
               Conread position:448-891
               
               
               Cow position:chr24:41980931-41980485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:450-565
               
               
               Cow position:chr24:25950934-25950821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 90

               
               
               Conread position:451-824
               
               
               Cow position:chr24:28349318-28349686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):9, 143

               
               
               Conread position:453-830
               
               
               Cow position:chr24:29388982-29389352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):77, 107

               
               
               Conread position:454-797
               
               
               Cow position:chr24:39226735-39227078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 143

               
               
               Conread position:454-828
               
               
               Cow position:chr24:2970870-2970493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):64, 209

               
               
               Conread position:455-564
               
               
               Cow position:chr24:11263141-11263253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:455-644
               
               
               Cow position:chr24:31388271-31388466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 129

               
               
               Conread position:456-882
               
               
               Cow position:chr24:42825759-42825349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):111, 207

               
               
               Conread position:457-900
               
               
               Cow position:chr24:27608358-27607928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 144

               
               
               Conread position:458-900
               
               
               Cow position:chr24:27039779-27040234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 217

               
               
               Conread position:461-796
               
               
               Cow position:chr24:43927577-43927250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):80, 10

               
               
               Conread position:464-660
               
               
               Cow position:chr24:27207448-27207242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:464-812
               
               
               Cow position:chr24:23824670-23824324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):123, 88

               
               
               Conread position:464-897
               
               
               Cow position:chr24:18343795-18344248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:303
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):76, 330

               
               
               Conread position:471-747
               
               
               Cow position:chr24:6487674-6487950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):99, 42

               
               
               Conread position:471-794
               
               
               Cow position:chr24:2096135-2095801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:471-801
               
               
               Cow position:chr24:27824218-27824550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):98, 48

               
               
               Conread position:471-899
               
               
               Cow position:chr24:18474994-18474546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 27

               
               
               Conread position:473-899
               
               
               Cow position:chr24:10498966-10499401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 136

               
               
               Conread position:474-880
               
               
               Cow position:chr24:24457491-24457078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):17, 159

               
               
               Conread position:474-896
               
               
               Cow position:chr24:17943408-17942997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):109, 61

               
               
               Conread position:479-824
               
               
               Cow position:chr24:33222178-33221823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 190

               
               
               Conread position:479-896
               
               
               Cow position:chr24:17285236-17284803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:292
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):72, 153

               
               
               Conread position:481-688
               
               
               Cow position:chr24:18695385-18695594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):60, 177

               
               
               Conread position:481-891
               
               
               Cow position:chr24:19179681-19179261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:481-891
               
               
               Cow position:chr24:25194030-25194441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):90, 75

               
               
               Conread position:482-688
               
               
               Cow position:chr24:31382673-31382876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):182, 65

               
               
               Conread position:486-843
               
               
               Cow position:chr24:20250135-20249766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):84, 172

               
               
               Conread position:491-755
               
               
               Cow position:chr24:22263307-22263570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 153

               
               
               Conread position:492-878
               
               
               Cow position:chr24:22224952-22225353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:269
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):59, 166

               
               
               Conread position:494-772
               
               
               Cow position:chr24:3663941-3664236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 266

               
               
               Conread position:494-858
               
               
               Cow position:chr24:31359099-31359460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 120

               
               
               Conread position:495-653
               
               
               Cow position:chr24:29540133-29539964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:496-891
               
               
               Cow position:chr24:16509751-16510146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:271
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):39, 31

               
               
               Conread position:498-746
               
               
               Cow position:chr24:39833735-39833482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):69, 158

               
               
               Conread position:500-824
               
               
               Cow position:chr24:33465818-33465513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):48, 30

               
               
               Conread position:500-895
               
               
               Cow position:chr24:22079239-22079642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):67, 168

               
               
               Conread position:502-854
               
               
               Cow position:chr24:15373194-15373544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:502-900
               
               
               Cow position:chr24:5633252-5632844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):49, 165

               
               
               Conread position:502-900
               
               
               Cow position:chr24:16645537-16645133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):24, 78

               
               
               Conread position:505-891
               
               
               Cow position:chr24:20801556-20801170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):30, 69

               
               
               Conread position:509-864
               
               
               Cow position:chr24:28990357-28990710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 100

               
               
               Conread position:510-777
               
               
               Cow position:chr24:15707650-15707381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 154

               
               
               Conread position:510-877
               
               
               Cow position:chr24:7476557-7476189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:511-882
               
               
               Cow position:chr24:17833015-17832663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:512-897
               
               
               Cow position:chr24:39143399-39143794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 146

               
               
               Conread position:512-900
               
               
               Cow position:chr24:16089027-16089414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):67, 97

               
               
               Conread position:514-897
               
               
               Cow position:chr24:6132080-6131707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):37, 113

               
               
               Conread position:520-827
               
               
               Cow position:chr24:5683088-5683393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 5

               
               
               Conread position:524-794
               
               
               Cow position:chr24:30897735-30897457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 142

               
               
               Conread position:526-900
               
               
               Cow position:chr24:352800-352418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):40, 144

               
               
               Conread position:534-891
               
               
               Cow position:chr24:29606215-29605858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:535-891
               
               
               Cow position:chr24:21606847-21606501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 51

               
               
               Conread position:535-891
               
               
               Cow position:chr24:41405731-41406069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:542-897
               
               
               Cow position:chr24:38006874-38006529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):25, 39

               
               
               Conread position:549-834
               
               
               Cow position:chr24:24061974-24061691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 110

               
               
               Conread position:550-817
               
               
               Cow position:chr24:32070806-32071063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:550-893
               
               
               Cow position:chr24:32739431-32739086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:563-770
               
               
               Cow position:chr24:37945778-37945572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):159, 92

               
               
               Conread position:564-896
               
               
               Cow position:chr24:19800701-19801019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):84, 49

               
               
               Conread position:565-764
               
               
               Cow position:chr24:43967646-43967446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):190, 99

               
               
               Conread position:565-797
               
               
               Cow position:chr24:19736474-19736251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:565-825
               
               
               Cow position:chr24:23187062-23186806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):232, 29

               
               
               Conread position:565-893
               
               
               Cow position:chr24:27630258-27630576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):250, 90

               
               
               Conread position:565-893
               
               
               Cow position:chr24:41423464-41423772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):147, 80

               
               
               Conread position:565-898
               
               
               Cow position:chr24:18281780-18281453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):11, 87

               
               
               Conread position:565-900
               
               
               Cow position:chr24:18357198-18356872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):325, 28

               
               
               Conread position:567-824
               
               
               Cow position:chr24:8006168-8006415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:567-824
               
               
               Cow position:chr24:24662272-24662022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):114, 26

               
               
               Conread position:567-829
               
               
               Cow position:chr24:14171836-14171580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 151

               
               
               Conread position:568-891
               
               
               Cow position:chr24:27220231-27219913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):8, 85

               
               
               Conread position:568-897
               
               
               Cow position:chr24:12200554-12200226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):249, 209

               
               
               Conread position:568-900
               
               
               Cow position:chr24:28233907-28234226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 65

               
               
               Conread position:569-891
               
               
               Cow position:chr24:389960-390275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):80, 66

               
               
               Conread position:570-886
               
               
               Cow position:chr24:37037757-37038061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 232

               
               
               Conread position:570-897
               
               
               Cow position:chr24:10242921-10242602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):156, 55

               
               
               Conread position:575-897
               
               
               Cow position:chr24:18999919-19000225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):70, 14

               
               
               Conread position:577-882
               
               
               Cow position:chr24:43832388-43832688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 120

               
               
               Conread position:578-824
               
               
               Cow position:chr24:34008708-34008464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):83, 73

               
               
               Conread position:578-825
               
               
               Cow position:chr24:18017096-18017337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):182, 81

               
               
               Conread position:578-882
               
               
               Cow position:chr24:17752244-17751942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):80, 6

               
               
               Conread position:578-882
               
               
               Cow position:chr24:27713536-27713244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:578-897
               
               
               Cow position:chr24:29586863-29587182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):74, 45

               
               
               Conread position:579-841
               
               
               Cow position:chr24:26554729-26554469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):77, 51

               
               
               Conread position:579-868
               
               
               Cow position:chr24:20594407-20594700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):69, 201

               
               
               Conread position:579-882
               
               
               Cow position:chr24:36008355-36008652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):84, 66

               
               
               Conread position:579-897
               
               
               Cow position:chr24:36711070-36711377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):207, 66

               
               
               Conread position:580-816
               
               
               Cow position:chr24:14457853-14457623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:580-820
               
               
               Cow position:chr24:28289379-28289147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:580-897
               
               
               Cow position:chr24:23863764-23863444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):67, 234

               
               
               Conread position:581-878
               
               
               Cow position:chr24:26880637-26880917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):197, 55

               
               
               Conread position:583-880
               
               
               Cow position:chr24:29561701-29561415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:584-891
               
               
               Cow position:chr24:39523573-39523275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:585-824
               
               
               Cow position:chr24:39791414-39791649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:589-895
               
               
               Cow position:chr24:37267540-37267845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):225, 56

               
               
               Conread position:594-891
               
               
               Cow position:chr24:37975097-37974808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 36

               
               
               Conread position:595-891
               
               
               Cow position:chr24:43536838-43537135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):180, 18

               
               
               Conread position:599-897
               
               
               Cow position:chr24:3656477-3656182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):215, 23

               
               
               Conread position:599-900
               
               
               Cow position:chr24:14550682-14550975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):291, 7

               
               
               Conread position:606-900
               
               
               Cow position:chr24:230172-230464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 48

               
               
               Conread position:607-824
               
               
               Cow position:chr24:30308660-30308443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 194

               
               
               Conread position:607-878
               
               
               Cow position:chr24:28342247-28342524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):21, 164

               
               
               Conread position:607-891
               
               
               Cow position:chr24:28600543-28600263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):6, 202

               
               
               Conread position:613-898
               
               
               Cow position:chr24:39911134-39910848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):92, 174

               
               
               Conread position:616-876
               
               
               Cow position:chr24:15288726-15288987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):31, 186

               
               
               Conread position:616-891
               
               
               Cow position:chr24:18755662-18755935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):93, 20

               
               
               Conread position:616-893
               
               
               Cow position:chr24:28042878-28043169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):190, 279

               
               
               Conread position:616-897
               
               
               Cow position:chr24:20807441-20807704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):241, 36

               
               
               Conread position:616-898
               
               
               Cow position:chr24:37823434-37823706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:616-900
               
               
               Cow position:chr24:13948027-13948306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):203, 39

               
               
               Conread position:616-900
               
               
               Cow position:chr24:27958570-27958282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):91, 35

               
               
               Conread position:617-891
               
               
               Cow position:chr24:20364503-20364241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:619-897
               
               
               Cow position:chr24:27349271-27348995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:620-796
               
               
               Cow position:chr24:4710336-4710161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):140, 119

               
               
               Conread position:620-897
               
               
               Cow position:chr24:23575247-23574977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):201, 35

               
               
               Conread position:621-898
               
               
               Cow position:chr24:175586-175327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:621-900
               
               
               Cow position:chr24:22156054-22156334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 32

               
               
               Conread position:622-900
               
               
               Cow position:chr24:27284732-27285008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):182, 32

               
               
               Conread position:625-847
               
               
               Cow position:chr24:6912453-6912224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:632-895
               
               
               Cow position:chr24:19623780-19624044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:636-882
               
               
               Cow position:chr24:2992952-2992714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:639-877
               
               
               Cow position:chr24:41916183-41916418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 12

               
               
               Conread position:643-824
               
               
               Cow position:chr24:42639321-42639139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 86

               
               
               Conread position:643-897
               
               
               Cow position:chr24:8676756-8677007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):167, 17

               
               
               Conread position:650-882
               
               
               Cow position:chr24:5360657-5360877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:650-896
               
               
               Cow position:chr24:28510735-28510970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:652-900
               
               
               Cow position:chr24:2379891-2380143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):145, 161

               
               
               Conread position:655-889
               
               
               Cow position:chr24:28344326-28344552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):6, 105

               
               
               Conread position:655-890
               
               
               Cow position:chr24:26001329-26001562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):233, 128

               
               
               Conread position:655-891
               
               
               Cow position:chr24:42984334-42984570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):111, 14

               
               
               Conread position:656-900
               
               
               Cow position:chr24:18750647-18750895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:657-818
               
               
               Cow position:chr24:42981813-42981657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:660-900
               
               
               Cow position:chr24:22133118-22133350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):214, 138

               
               
               Conread position:661-891
               
               
               Cow position:chr24:29985037-29984815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 139

               
               
               Conread position:665-897
               
               
               Cow position:chr24:19186893-19187114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 47

               
               
               Conread position:665-900
               
               
               Cow position:chr24:37651677-37651905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):192, 133

               
               
               Conread position:668-900
               
               
               Cow position:chr24:21835004-21834779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:669-900
               
               
               Cow position:chr24:42687804-42688030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):214, 59

               
               
               Conread position:677-897
               
               
               Cow position:chr24:13587028-13586809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):65, 92

               
               
               Conread position:679-891
               
               
               Cow position:chr24:7757738-7757944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:681-882
               
               
               Cow position:chr24:25122312-25122503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:681-900
               
               
               Cow position:chr24:29539961-29539746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:682-898
               
               
               Cow position:chr24:36286538-36286751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):206, 118

               
               
               Conread position:685-900
               
               
               Cow position:chr24:3412655-3412862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:688-899
               
               
               Cow position:chr24:18302689-18302897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:691-896
               
               
               Cow position:chr24:6886989-6887187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):192, 37

               
               
               Conread position:692-891
               
               
               Cow position:chr24:36775798-36775596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):135, 37

               
               
               Conread position:692-897
               
               
               Cow position:chr24:18730323-18730529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):126, 90

               
               
               Conread position:694-893
               
               
               Cow position:chr24:43499639-43499835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:698-880
               
               
               Cow position:chr24:32891059-32890884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:698-890
               
               
               Cow position:chr24:18874836-18874646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):83, 69

               
               
               Conread position:698-891
               
               
               Cow position:chr24:27553080-27553275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):106, 63

               
               
               Conread position:698-891
               
               
               Cow position:chr24:33238280-33238079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:698-893
               
               
               Cow position:chr24:21524049-21524242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):68, 81

               
               
               Conread position:698-897
               
               
               Cow position:chr24:2261652-2261851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):62, 76

               
               
               Conread position:698-897
               
               
               Cow position:chr24:11028704-11028505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):119, 85

               
               
               Conread position:698-900
               
               
               Cow position:chr24:39304936-39304727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 69

               
               
               Conread position:700-896
               
               
               Cow position:chr24:27940634-27940449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):76, 38

               
               
               Conread position:701-878
               
               
               Cow position:chr24:161991-162168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):65, 72

               
               
               Conread position:701-891
               
               
               Cow position:chr24:16640897-16641088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:701-897
               
               
               Cow position:chr24:29677928-29677727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:703-890
               
               
               Cow position:chr24:26569447-26569633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 81

               
               
               Conread position:703-897
               
               
               Cow position:chr24:20323512-20323316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):112, 97

               
               
               Conread position:705-880
               
               
               Cow position:chr24:10219393-10219222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:705-900
               
               
               Cow position:chr24:25142601-25142802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):61, 69

               
               
               Conread position:706-900
               
               
               Cow position:chr24:20017435-20017241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 69

               
               
               Conread position:709-891
               
               
               Cow position:chr24:15557346-15557169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):57, 65

               
               
               Conread position:717-896
               
               
               Cow position:chr24:25947858-25947679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):43, 57

               
               
               Conread position:718-891
               
               
               Cow position:chr24:24091335-24091159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:724-896
               
               
               Cow position:chr24:22129627-22129465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:729-891
               
               
               Cow position:chr24:27413095-27412940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:732-900
               
               
               Cow position:chr24:6488227-6488387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:732-900
               
               
               Cow position:chr24:21656425-21656595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):39, 82
Show alignments to all cow chromosomes.
Conread position:	287-549
Cow position:	chr24:5130731-5130464 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	183
Alignm E-value:	4e-33
Alignm gaps (pig, cow):	45, 0
Conread position:	306-715
Cow position:	chr24:5849824-5849390 (view UCSC Genome Browser custom track)
Alignm length:	438
Alignm identity:	300
Alignm E-value:	1.96182e-44
Alignm gaps (pig, cow):	9, 126
Conread position:	310-573
Cow position:	chr24:16610861-16610597 (view UCSC Genome Browser custom track)
Alignm length:	269
Alignm identity:	190
Alignm E-value:	7e-37
Alignm gaps (pig, cow):	22, 140
Conread position:	315-460
Cow position:	chr24:8814418-8814271 (view UCSC Genome Browser custom track)
Alignm length:	151
Alignm identity:	118
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	9, 102
Conread position:	315-648
Cow position:	chr24:32668876-32669211 (view UCSC Genome Browser custom track)
Alignm length:	342
Alignm identity:	235
Alignm E-value:	8.99999e-40
Alignm gaps (pig, cow):	26, 8
Conread position:	315-650
Cow position:	chr24:40056124-40055789 (view UCSC Genome Browser custom track)
Alignm length:	348
Alignm identity:	248
Alignm E-value:	5.04467e-44
Alignm gaps (pig, cow):	9, 101
Conread position:	315-660
Cow position:	chr24:38593237-38593601 (view UCSC Genome Browser custom track)
Alignm length:	366
Alignm identity:	248
Alignm E-value:	2e-37
Alignm gaps (pig, cow):	16, 168
Conread position:	315-670
Cow position:	chr24:6413397-6413769 (view UCSC Genome Browser custom track)
Alignm length:	375
Alignm identity:	255
Alignm E-value:	3.00004e-41
Alignm gaps (pig, cow):	23, 345
Conread position:	315-881
Cow position:	chr24:40129703-40130301 (view UCSC Genome Browser custom track)
Alignm length:	606
Alignm identity:	420
Alignm E-value:	0
Alignm gaps (pig, cow):	9, 169
Conread position:	315-897
Cow position:	chr24:9070844-9070259 (view UCSC Genome Browser custom track)
Alignm length:	603
Alignm identity:	404
Alignm E-value:	0
Alignm gaps (pig, cow):	5, 297
Conread position:	322-775
Cow position:	chr24:32823194-32822709 (view UCSC Genome Browser custom track)
Alignm length:	491
Alignm identity:	322
Alignm E-value:	7e-37
Alignm gaps (pig, cow):	9, 80
Conread position:	322-820
Cow position:	chr24:31309025-31309498 (view UCSC Genome Browser custom track)
Alignm length:	504
Alignm identity:	353
Alignm E-value:	0
Alignm gaps (pig, cow):	10, 102
Conread position:	323-717
Cow position:	chr24:43635033-43635441 (view UCSC Genome Browser custom track)
Alignm length:	415
Alignm identity:	289
Alignm E-value:	0
Alignm gaps (pig, cow):	13, 148
Conread position:	324-465
Cow position:	chr24:28216450-28216594 (view UCSC Genome Browser custom track)
Alignm length:	145
Alignm identity:	114
Alignm E-value:	8e-28
Alignm gaps (pig, cow):	12, 0
Conread position:	324-468
Cow position:	chr24:16897237-16897090 (view UCSC Genome Browser custom track)
Alignm length:	149
Alignm identity:	112
Alignm E-value:	4e-22
Alignm gaps (pig, cow):	12, 138
Conread position:	324-505
Cow position:	chr24:37480699-37480511 (view UCSC Genome Browser custom track)
Alignm length:	189
Alignm identity:	135
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	19, 0
Conread position:	324-557
Cow position:	chr24:17365050-17364814 (view UCSC Genome Browser custom track)
Alignm length:	240
Alignm identity:	170
Alignm E-value:	1e-30
Alignm gaps (pig, cow):	12, 148
Conread position:	324-568
Cow position:	chr24:16625894-16625654 (view UCSC Genome Browser custom track)
Alignm length:	245
Alignm identity:	187
Alignm E-value:	0
Alignm gaps (pig, cow):	214, 0
Conread position:	324-752
Cow position:	chr24:32213066-32212628 (view UCSC Genome Browser custom track)
Alignm length:	447
Alignm identity:	299
Alignm E-value:	1.00053e-42
Alignm gaps (pig, cow):	12, 297
Conread position:	324-755
Cow position:	chr24:6035245-6034808 (view UCSC Genome Browser custom track)
Alignm length:	447
Alignm identity:	281
Alignm E-value:	1e-29
Alignm gaps (pig, cow):	17, 121