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Cow genome map

           
Conread name:
           
Ss1.1-Spl1-SPL010021F06.5
        

               
Conread position:
               
53-637
               

               
Cow position:
               
chr29:35300087-35300683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
500, 576
               

               
Conread position:
               
296-650
               

               
Cow position:
               
chr29:12798532-12798882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 136
               

               
Conread position:
               
303-562
               

               
Cow position:
               
chr29:36356464-36356713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
45, 30
               

               
Conread position:
               
304-763
               

               
Cow position:
               
chr29:19398789-19399266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
28, 351
               

               
Conread position:
               
310-823
               

               
Cow position:
               
chr29:19338571-19339131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
311-802
               

               
Cow position:
               
chr29:26616126-26615605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 246
               

               
Conread position:
               
315-538
               

               
Cow position:
               
chr29:28506708-28506925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 55
               

               
Conread position:
               
315-549
               

               
Cow position:
               
chr29:8426990-8426759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
154, 23
               

               
Conread position:
               
315-549
               

               
Cow position:
               
chr29:34552066-34552306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
9, 219
               

               
Conread position:
               
315-549
               

               
Cow position:
               
chr29:38910390-38910149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
315-563
               

               
Cow position:
               
chr29:32942846-32943099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
9, 90
               

               
Conread position:
               
315-564
               

               
Cow position:
               
chr29:686577-686326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 149
               

               
Conread position:
               
315-688
               

               
Cow position:
               
chr29:35281117-35281495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 162
               

               
Conread position:
               
315-755
               

               
Cow position:
               
chr29:7560787-7560352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
9, 168
               

               
Conread position:
               
315-812
               

               
Cow position:
               
chr29:20429350-20428845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 107
               

               
Conread position:
               
315-883
               

               
Cow position:
               
chr29:3972932-3972350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
8, 84
               

               
Conread position:
               
316-758
               

               
Cow position:
               
chr29:35484863-35485313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 58
               

               
Conread position:
               
317-626
               

               
Cow position:
               
chr29:32808215-32808534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
317-750
               

               
Cow position:
               
chr29:18212356-18211939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 100
               

               
Conread position:
               
317-891
               

               
Cow position:
               
chr29:28195899-28195335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 109
               

               
Conread position:
               
317-891
               

               
Cow position:
               
chr29:42771282-42771851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 113
               

               
Conread position:
               
319-657
               

               
Cow position:
               
chr29:7041211-7040874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 72
               

               
Conread position:
               
320-568
               

               
Cow position:
               
chr29:12674763-12675015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
12, 181
               

               
Conread position:
               
324-528
               

               
Cow position:
               
chr29:10674641-10674846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
14, 149
               

               
Conread position:
               
324-549
               

               
Cow position:
               
chr29:34734549-34734332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
15, 91
               

               
Conread position:
               
324-562
               

               
Cow position:
               
chr29:41850190-41849947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
324-565
               

               
Cow position:
               
chr29:17543081-17543317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
324-717
               

               
Cow position:
               
chr29:44902075-44901677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 166
               

               
Conread position:
               
324-759
               

               
Cow position:
               
chr29:26263482-26263904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 128
               

               
Conread position:
               
324-859
               

               
Cow position:
               
chr29:45005989-45005459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 141
               

               
Conread position:
               
324-897
               

               
Cow position:
               
chr29:35291725-35292291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 211
               

               
Conread position:
               
325-896
               

               
Cow position:
               
chr29:9709334-9709895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 16
               

               
Conread position:
               
326-749
               

               
Cow position:
               
chr29:3704569-3704140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 47
               

               
Conread position:
               
329-678
               

               
Cow position:
               
chr29:45583173-45582826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
12, 121
               

               
Conread position:
               
329-897
               

               
Cow position:
               
chr29:15944203-15944766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 303
               

               
Conread position:
               
331-547
               

               
Cow position:
               
chr29:15289379-15289594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
5, 37
               

               
Conread position:
               
331-559
               

               
Cow position:
               
chr29:21592339-21592560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
11, 169
               

               
Conread position:
               
331-565
               

               
Cow position:
               
chr29:36242979-36243211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
331-664
               

               
Cow position:
               
chr29:26130427-26130762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 76
               

               
Conread position:
               
331-755
               

               
Cow position:
               
chr29:28990581-28991008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
8, 335
               

               
Conread position:
               
331-803
               

               
Cow position:
               
chr29:10652974-10653444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
9, 258
               

               
Conread position:
               
331-820
               

               
Cow position:
               
chr29:12309633-12310135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 128
               

               
Conread position:
               
331-897
               

               
Cow position:
               
chr29:465765-465189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 92
               

               
Conread position:
               
331-897
               

               
Cow position:
               
chr29:26017876-26017296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 157
               

               
Conread position:
               
331-898
               

               
Cow position:
               
chr29:19619402-19618817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 320
               

               
Conread position:
               
332-540
               

               
Cow position:
               
chr29:16501522-16501732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
332-549
               

               
Cow position:
               
chr29:20308107-20308326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
332-764
               

               
Cow position:
               
chr29:2589262-2588818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 138
               

               
Conread position:
               
332-771
               

               
Cow position:
               
chr29:9638675-9638241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 142
               

               
Conread position:
               
333-487
               

               
Cow position:
               
chr29:27694069-27693918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 51
               

               
Conread position:
               
333-660
               

               
Cow position:
               
chr29:3822503-3822814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
274, 35
               

               
Conread position:
               
334-447
               

               
Cow position:
               
chr29:34774224-34774110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
334-538
               

               
Cow position:
               
chr29:29302386-29302183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
7, 91
               

               
Conread position:
               
334-551
               

               
Cow position:
               
chr29:4620816-4621034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
334-551
               

               
Cow position:
               
chr29:23703202-23702986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
334-551
               

               
Cow position:
               
chr29:28047551-28047333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
135, 158
               

               
Conread position:
               
334-568
               

               
Cow position:
               
chr29:2534307-2534542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
334-568
               

               
Cow position:
               
chr29:15401117-15400882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
7, 158
               

               
Conread position:
               
334-568
               

               
Cow position:
               
chr29:18781505-18781735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
7, 134
               

               
Conread position:
               
334-568
               

               
Cow position:
               
chr29:23988439-23988682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
104, 54
               

               
Conread position:
               
334-659
               

               
Cow position:
               
chr29:11696179-11696502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 69
               

               
Conread position:
               
334-683
               

               
Cow position:
               
chr29:24345825-24345455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
7, 313
               

               
Conread position:
               
334-742
               

               
Cow position:
               
chr29:19792629-19792225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
9, 98
               

               
Conread position:
               
334-812
               

               
Cow position:
               
chr29:13127468-13127000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 13
               

               
Conread position:
               
334-879
               

               
Cow position:
               
chr29:36586219-36586755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 118
               

               
Conread position:
               
334-895
               

               
Cow position:
               
chr29:23874096-23874665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 74
               

               
Conread position:
               
334-897
               

               
Cow position:
               
chr29:43080968-43080404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
201, 98
               

               
Conread position:
               
334-900
               

               
Cow position:
               
chr29:732267-732816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 7
               

               
Conread position:
               
335-483
               

               
Cow position:
               
chr29:14372633-14372485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
335-548
               

               
Cow position:
               
chr29:27846146-27846353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
6, 90
               

               
Conread position:
               
335-550
               

               
Cow position:
               
chr29:34530076-34530296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
335-568
               

               
Cow position:
               
chr29:11636833-11636603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
335-603
               

               
Cow position:
               
chr29:40903077-40902804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 6
               

               
Conread position:
               
336-537
               

               
Cow position:
               
chr29:36209569-36209762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
5, 113
               

               
Conread position:
               
337-556
               

               
Cow position:
               
chr29:13017749-13017529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
6, 194
               

               
Conread position:
               
339-563
               

               
Cow position:
               
chr29:292365-292589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-568
               

               
Cow position:
               
chr29:4537711-4537941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
124, 160
               

               
Conread position:
               
339-642
               

               
Cow position:
               
chr29:27007764-27008071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
193, 102
               

               
Conread position:
               
339-663
               

               
Cow position:
               
chr29:19508592-19508928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
87, 42
               

               
Conread position:
               
339-698
               

               
Cow position:
               
chr29:8190834-8190459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
136, 232
               

               
Conread position:
               
339-726
               

               
Cow position:
               
chr29:7865917-7865519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
226, 5
               

               
Conread position:
               
339-751
               

               
Cow position:
               
chr29:27928019-27927599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
231, 312
               

               
Conread position:
               
339-755
               

               
Cow position:
               
chr29:17795065-17795493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
231, 338
               

               
Conread position:
               
339-762
               

               
Cow position:
               
chr29:18072583-18073010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
227, 81
               

               
Conread position:
               
339-882
               

               
Cow position:
               
chr29:28197363-28196831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 264
               

               
Conread position:
               
339-891
               

               
Cow position:
               
chr29:19428318-19428848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 74
               

               
Conread position:
               
339-897
               

               
Cow position:
               
chr29:6635749-6636282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 194
               

               
Conread position:
               
339-898
               

               
Cow position:
               
chr29:29056828-29057384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 153
               

               
Conread position:
               
340-451
               

               
Cow position:
               
chr29:37486037-37486148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-455
               

               
Cow position:
               
chr29:11563157-11563042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-462
               

               
Cow position:
               
chr29:4519613-4519735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-465
               

               
Cow position:
               
chr29:13586083-13586208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-465
               

               
Cow position:
               
chr29:32349663-32349538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-466
               

               
Cow position:
               
chr29:526958-526832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-466
               

               
Cow position:
               
chr29:13853711-13853837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-466
               

               
Cow position:
               
chr29:13903394-13903268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-466
               

               
Cow position:
               
chr29:18752112-18752238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-466
               

               
Cow position:
               
chr29:32378450-32378576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-466
               

               
Cow position:
               
chr29:39213971-39213845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-493
               

               
Cow position:
               
chr29:10154911-10155059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
340-493
               

               
Cow position:
               
chr29:43009466-43009311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
340-505
               

               
Cow position:
               
chr29:15257862-15258027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-505
               

               
Cow position:
               
chr29:40157623-40157788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-506
               

               
Cow position:
               
chr29:23240159-23240324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
340-507
               

               
Cow position:
               
chr29:6774192-6774025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 73
               

               
Conread position:
               
340-527
               

               
Cow position:
               
chr29:28665447-28665632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 81
               

               
Conread position:
               
340-528
               

               
Cow position:
               
chr29:33520344-33520156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-529
               

               
Cow position:
               
chr29:457400-457212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
340-531
               

               
Cow position:
               
chr29:40621286-40621094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
37, 84
               

               
Conread position:
               
340-532
               

               
Cow position:
               
chr29:15570413-15570605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
137, 128
               

               
Conread position:
               
340-532
               

               
Cow position:
               
chr29:16939653-16939845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-533
               

               
Cow position:
               
chr29:22122027-22122218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
340-534
               

               
Cow position:
               
chr29:39331930-39331740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
90, 103
               

               
Conread position:
               
340-538
               

               
Cow position:
               
chr29:24669593-24669791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
160, 14
               

               
Conread position:
               
340-539
               

               
Cow position:
               
chr29:43499821-43499622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-541
               

               
Cow position:
               
chr29:629280-629475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 16
               

               
Conread position:
               
340-541
               

               
Cow position:
               
chr29:31765919-31766120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-546
               

               
Cow position:
               
chr29:11334850-11334645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
199, 0
               

               
Conread position:
               
340-547
               

               
Cow position:
               
chr29:4084718-4084917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
340-548
               

               
Cow position:
               
chr29:903578-903786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-549
               

               
Cow position:
               
chr29:5636607-5636812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
340-549
               

               
Cow position:
               
chr29:8493138-8492934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
340-549
               

               
Cow position:
               
chr29:8588858-8588652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
340-549
               

               
Cow position:
               
chr29:16168391-16168182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
108, 137
               

               
Conread position:
               
340-549
               

               
Cow position:
               
chr29:39075557-39075348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-549
               

               
Cow position:
               
chr29:43327673-43327878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
340-549
               

               
Cow position:
               
chr29:43692603-43692811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
340-549
               

               
Cow position:
               
chr29:43729716-43729923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
340-550
               

               
Cow position:
               
chr29:8110212-8110011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
340-550
               

               
Cow position:
               
chr29:18724110-18723900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-551
               

               
Cow position:
               
chr29:727608-727816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
340-551
               

               
Cow position:
               
chr29:5786574-5786782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
340-551
               

               
Cow position:
               
chr29:9641800-9642023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
340-551
               

               
Cow position:
               
chr29:15116648-15116437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-551
               

               
Cow position:
               
chr29:15755288-15755077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-551
               

               
Cow position:
               
chr29:16067231-16067442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-551
               

               
Cow position:
               
chr29:16184900-16184691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
340-551
               

               
Cow position:
               
chr29:24982692-24982482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
340-551
               

               
Cow position:
               
chr29:26346283-26346495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
101, 18
               

               
Conread position:
               
340-551
               

               
Cow position:
               
chr29:26633645-26633434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
79, 71
               

               
Conread position:
               
340-551
               

               
Cow position:
               
chr29:32582040-32581825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
340-551
               

               
Cow position:
               
chr29:35264489-35264277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
340-553
               

               
Cow position:
               
chr29:21231203-21230988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
340-555
               

               
Cow position:
               
chr29:561478-561693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-557
               

               
Cow position:
               
chr29:10031774-10031557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-559
               

               
Cow position:
               
chr29:1612925-1612714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
340-559
               

               
Cow position:
               
chr29:15808621-15808841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
340-562
               

               
Cow position:
               
chr29:1688613-1688835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-562
               

               
Cow position:
               
chr29:15576412-15576190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-562
               

               
Cow position:
               
chr29:40618090-40617868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-563
               

               
Cow position:
               
chr29:6455524-6455747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-563
               

               
Cow position:
               
chr29:16065588-16065810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
340-564
               

               
Cow position:
               
chr29:32644561-32644790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
163, 72
               

               
Conread position:
               
340-564
               

               
Cow position:
               
chr29:40337886-40337661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
34, 183
               

               
Conread position:
               
340-565
               

               
Cow position:
               
chr29:21665621-21665837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
340-565
               

               
Cow position:
               
chr29:32308678-32308456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
119, 190
               

               
Conread position:
               
340-565
               

               
Cow position:
               
chr29:36193022-36192801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
340-566
               

               
Cow position:
               
chr29:2374357-2374132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
169, 162
               

               
Conread position:
               
340-566
               

               
Cow position:
               
chr29:14116690-14116911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
340-566
               

               
Cow position:
               
chr29:15936616-15936391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
181, 23
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:1911765-1911537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:2521226-2521456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:3330461-3330689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:4611239-4611467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:5935838-5936065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:6414160-6414388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:9861223-9860995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:10122459-10122231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:10200568-10200796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:11118833-11118605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:11703669-11703897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:11798807-11799033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:12571083-12571311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:12898437-12898665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:13040907-13040682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
91, 30
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:13623495-13623267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:13876542-13876314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:16110004-16110232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:16785556-16785784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:18011450-18011678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:18300364-18300592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:19925107-19924879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:21209812-21210040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:21619798-21619570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:22341391-22341619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:23980606-23980834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:24013380-24013608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:24305072-24304844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:24420495-24420274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:24616279-24616507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:24945339-24945111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:25824594-25824821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:26987210-26987438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:28579019-28579247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
11, 6
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:29066073-29066296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:29632291-29632063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:30433327-30433553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:32298603-32298831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:32516372-32516599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:32555868-32555643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:35455323-35455095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:35735741-35735513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:38672214-38671985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:39047979-39048207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:40330418-40330646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:40894587-40894804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:42253865-42253637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr29:42413813-42414041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
340-605
               

               
Cow position:
               
chr29:37618813-37619079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
204, 234
               

               
Conread position:
               
340-614
               

               
Cow position:
               
chr29:26289440-26289160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
193, 118
               

               
Conread position:
               
340-616
               

               
Cow position:
               
chr29:36633188-36632912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
212, 118
               

               
Conread position:
               
340-621
               

               
Cow position:
               
chr29:9332790-9333064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 212
               

               
Conread position:
               
340-636
               

               
Cow position:
               
chr29:43847-43538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
129, 146
               

               
Conread position:
               
340-646
               

               
Cow position:
               
chr29:22949017-22948715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
96, 124
               

               
Conread position:
               
340-650
               

               
Cow position:
               
chr29:27005531-27005832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
289, 117
               

               
Conread position:
               
340-653
               

               
Cow position:
               
chr29:2481686-2481373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
83, 134
               

               
Conread position:
               
340-653
               

               
Cow position:
               
chr29:5948141-5947828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 266
               

               
Conread position:
               
340-654
               

               
Cow position:
               
chr29:21528948-21529252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
170, 71
               

               
Conread position:
               
340-655
               

               
Cow position:
               
chr29:2483596-2483269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
213, 0
               

               
Conread position:
               
340-655
               

               
Cow position:
               
chr29:2484941-2485268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
213, 0
               

               
Conread position:
               
340-655
               

               
Cow position:
               
chr29:7666383-7666061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
207, 116
               

               
Conread position:
               
340-655
               

               
Cow position:
               
chr29:7953708-7954035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
213, 0
               

               
Conread position:
               
340-655
               

               
Cow position:
               
chr29:32329381-32329054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
213, 0
               

               
Conread position:
               
340-655
               

               
Cow position:
               
chr29:34293523-34293196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
81, 73
               

               
Conread position:
               
340-655
               

               
Cow position:
               
chr29:34865466-34865793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
213, 0
               

               
Conread position:
               
340-657
               

               
Cow position:
               
chr29:10267491-10267167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
212, 108
               

               
Conread position:
               
340-658
               

               
Cow position:
               
chr29:961569-961895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 23
               

               
Conread position:
               
340-659
               

               
Cow position:
               
chr29:40014054-40013729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
196, 113
               

               
Conread position:
               
340-660
               

               
Cow position:
               
chr29:3460467-3460795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
208, 308
               

               
Conread position:
               
340-661
               

               
Cow position:
               
chr29:9977415-9977082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
134, 128
               

               
Conread position:
               
340-661
               

               
Cow position:
               
chr29:30707902-30707580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 217
               

               
Conread position:
               
340-662
               

               
Cow position:
               
chr29:16175625-16175296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 155
               

               
Conread position:
               
340-662
               

               
Cow position:
               
chr29:17077884-17078220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
116, 49
               

               
Conread position:
               
340-662
               

               
Cow position:
               
chr29:18772959-18772618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
89, 300
               

               
Conread position:
               
340-662
               

               
Cow position:
               
chr29:23448955-23448611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
340-662
               

               
Cow position:
               
chr29:23763457-23763121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
213, 0
               

               
Conread position:
               
340-662
               

               
Cow position:
               
chr29:32317741-32318072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
213, 34
               

               
Conread position:
               
340-663
               

               
Cow position:
               
chr29:27702954-27703276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
128, 139
               

               
Conread position:
               
340-665
               

               
Cow position:
               
chr29:14569175-14569513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
81, 73
               

               
Conread position:
               
340-665
               

               
Cow position:
               
chr29:15965675-15965339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
230, 331
               

               
Conread position:
               
340-666
               

               
Cow position:
               
chr29:3282343-3282673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
205, 304
               

               
Conread position:
               
340-667
               

               
Cow position:
               
chr29:19386066-19386405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
203, 0
               

               
Conread position:
               
340-668
               

               
Cow position:
               
chr29:11321701-11321362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
213, 68
               

               
Conread position:
               
340-668
               

               
Cow position:
               
chr29:17041296-17041631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
230, 79
               

               
Conread position:
               
340-668
               

               
Cow position:
               
chr29:19524262-19523916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
205, 0
               

               
Conread position:
               
340-668
               

               
Cow position:
               
chr29:45650692-45650361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 43
               

               
Conread position:
               
340-669
               

               
Cow position:
               
chr29:2415161-2414832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 67
               

               
Conread position:
               
340-670
               

               
Cow position:
               
chr29:5238364-5238704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
211, 311
               

               
Conread position:
               
340-670
               

               
Cow position:
               
chr29:5241274-5241614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
211, 311
               

               
Conread position:
               
340-670
               

               
Cow position:
               
chr29:10451921-10451579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
211, 317
               

               
Conread position:
               
340-670
               

               
Cow position:
               
chr29:16097667-16097335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
211, 65
               

               
Conread position:
               
340-670
               

               
Cow position:
               
chr29:25775401-25775054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
75, 170
               

               
Conread position:
               
340-671
               

               
Cow position:
               
chr29:34780107-34779763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
213, 22
               

               
Conread position:
               
340-676
               

               
Cow position:
               
chr29:20255042-20255388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
131, 118
               

               
Conread position:
               
340-677
               

               
Cow position:
               
chr29:34793688-34793339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
211, 127
               

               
Conread position:
               
340-678
               

               
Cow position:
               
chr29:606769-606423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
213, 311
               

               
Conread position:
               
340-678
               

               
Cow position:
               
chr29:6261674-6261328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
126, 106
               

               
Conread position:
               
340-678
               

               
Cow position:
               
chr29:26160951-26160605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
187, 78
               

               
Conread position:
               
340-678
               

               
Cow position:
               
chr29:32353474-32353819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
213, 199
               

               
Conread position:
               
340-678
               

               
Cow position:
               
chr29:38410075-38410424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
230, 335
               

               
Conread position:
               
340-678
               

               
Cow position:
               
chr29:42807855-42808200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
208, 102
               

               
Conread position:
               
340-678
               

               
Cow position:
               
chr29:45208376-45208716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
211, 62
               

               
Conread position:
               
340-685
               

               
Cow position:
               
chr29:4649074-4648723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
230, 328
               

               
Conread position:
               
340-685
               

               
Cow position:
               
chr29:28689256-28689608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 310
               

               
Conread position:
               
340-689
               

               
Cow position:
               
chr29:5138879-5139241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
230, 116
               

               
Conread position:
               
340-689
               

               
Cow position:
               
chr29:15767747-15767390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
213, 311
               

               
Conread position:
               
340-689
               

               
Cow position:
               
chr29:18561151-18560796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
213, 267
               

               
Conread position:
               
340-689
               

               
Cow position:
               
chr29:20014409-20014052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
230, 311
               

               
Conread position:
               
340-689
               

               
Cow position:
               
chr29:26449985-26449622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
213, 0
               

               
Conread position:
               
340-689
               

               
Cow position:
               
chr29:32292470-32292827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
213, 311
               

               
Conread position:
               
340-703
               

               
Cow position:
               
chr29:23119731-23119357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 121
               

               
Conread position:
               
340-716
               

               
Cow position:
               
chr29:2401233-2401617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
213, 310
               

               
Conread position:
               
340-716
               

               
Cow position:
               
chr29:11684651-11685032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 266
               

               
Conread position:
               
340-716
               

               
Cow position:
               
chr29:15855438-15855819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
213, 126
               

               
Conread position:
               
340-719
               

               
Cow position:
               
chr29:42821432-42821816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
125, 53
               

               
Conread position:
               
340-720
               

               
Cow position:
               
chr29:11697094-11697482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
213, 311
               

               
Conread position:
               
340-720
               

               
Cow position:
               
chr29:20593610-20593997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
215, 143
               

               
Conread position:
               
340-720
               

               
Cow position:
               
chr29:31185254-31185641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
217, 60
               

               
Conread position:
               
340-725
               

               
Cow position:
               
chr29:6879053-6878662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
225, 91
               

               
Conread position:
               
340-725
               

               
Cow position:
               
chr29:16694070-16694452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
201, 59
               

               
Conread position:
               
340-725
               

               
Cow position:
               
chr29:24121213-24120821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
180, 176
               

               
Conread position:
               
340-726
               

               
Cow position:
               
chr29:20055290-20055684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
213, 311
               

               
Conread position:
               
340-726
               

               
Cow position:
               
chr29:37785540-37785137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 85
               

               
Conread position:
               
340-727
               

               
Cow position:
               
chr29:6775339-6774961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 44
               

               
Conread position:
               
340-728
               

               
Cow position:
               
chr29:734892-734504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 136
               

               
Conread position:
               
340-728
               

               
Cow position:
               
chr29:13590065-13589664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
211, 157
               

               
Conread position:
               
340-737
               

               
Cow position:
               
chr29:756757-756353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
213, 309
               

               
Conread position:
               
340-742
               

               
Cow position:
               
chr29:11136242-11135845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 118
               

               
Conread position:
               
340-751
               

               
Cow position:
               
chr29:1479329-1479747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
213, 311
               

               
Conread position:
               
340-751
               

               
Cow position:
               
chr29:17131971-17131559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
78, 140
               

               
Conread position:
               
340-751
               

               
Cow position:
               
chr29:24304220-24304639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
213, 311
               

               
Conread position:
               
340-751
               

               
Cow position:
               
chr29:36008040-36008457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
81, 73
               

               
Conread position:
               
340-752
               

               
Cow position:
               
chr29:24659454-24659037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
127, 80
               

               
Conread position:
               
340-753
               

               
Cow position:
               
chr29:29974691-29975100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 7
               

               
Conread position:
               
340-753
               

               
Cow position:
               
chr29:40498001-40497587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
211, 287
               

               
Conread position:
               
340-754
               

               
Cow position:
               
chr29:10643249-10642827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
211, 311
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:406618-406202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
211, 118
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:2103720-2104145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
230, 313
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:2188703-2188292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
87, 206
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:2694580-2695006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
211, 253
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:4524506-4524920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
203, 80
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:5550647-5551069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
180, 34
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:7427264-7426841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
213, 311
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:8623357-8622939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
212, 76
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:8935131-8935554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 151
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:9717298-9717721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
212, 118
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:14611124-14611546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
213, 307
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:16209503-16209080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
211, 311
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:16382500-16382920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
225, 128
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:20462971-20462549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 0
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:21475327-21475750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
230, 311
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:25926908-25926485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
181, 176
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:35077009-35077427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
180, 128
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:37268086-37267666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
129, 136
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:38349482-38349063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
205, 157
               

               
Conread position:
               
340-755
               

               
Cow position:
               
chr29:45624614-45624192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
209, 43
               

               
Conread position:
               
340-756
               

               
Cow position:
               
chr29:7811319-7810896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 77
               

               
Conread position:
               
340-760
               

               
Cow position:
               
chr29:6925664-6926074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 107
               

               
Conread position:
               
340-761
               

               
Cow position:
               
chr29:2402565-2402993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
232, 100
               

               
Conread position:
               
340-763
               

               
Cow position:
               
chr29:4201765-4202193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 316
               

               
Conread position:
               
340-764
               

               
Cow position:
               
chr29:35075577-35075144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
213, 309
               

               
Conread position:
               
340-768
               

               
Cow position:
               
chr29:13107984-13108413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
225, 117
               

               
Conread position:
               
340-768
               

               
Cow position:
               
chr29:45627209-45627640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
131, 73
               

               
Conread position:
               
340-769
               

               
Cow position:
               
chr29:649914-650356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
98, 349
               

               
Conread position:
               
340-769
               

               
Cow position:
               
chr29:13553791-13554214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
231, 86
               

               
Conread position:
               
340-769
               

               
Cow position:
               
chr29:17668152-17668565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
230, 86
               

               
Conread position:
               
340-771
               

               
Cow position:
               
chr29:28637415-28636988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
211, 80
               

               
Conread position:
               
340-773
               

               
Cow position:
               
chr29:38261612-38261170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
186, 313
               

               
Conread position:
               
340-774
               

               
Cow position:
               
chr29:10819836-10819398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
129, 78
               

               
Conread position:
               
340-775
               

               
Cow position:
               
chr29:12189491-12189050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
211, 127
               

               
Conread position:
               
340-785
               

               
Cow position:
               
chr29:15940992-15940536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 344
               

               
Conread position:
               
340-787
               

               
Cow position:
               
chr29:20213439-20213894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
211, 311
               

               
Conread position:
               
340-793
               

               
Cow position:
               
chr29:18963389-18963836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
226, 85
               

               
Conread position:
               
340-802
               

               
Cow position:
               
chr29:6217908-6217434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
49, 90
               

               
Conread position:
               
340-807
               

               
Cow position:
               
chr29:43495716-43496154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
163, 39
               

               
Conread position:
               
340-809
               

               
Cow position:
               
chr29:41811928-41811472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 73
               

               
Conread position:
               
340-812
               

               
Cow position:
               
chr29:4367383-4367846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
195, 73
               

               
Conread position:
               
340-812
               

               
Cow position:
               
chr29:11365903-11366354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
192, 81
               

               
Conread position:
               
340-812
               

               
Cow position:
               
chr29:36216765-36217233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 82
               

               
Conread position:
               
340-820
               

               
Cow position:
               
chr29:18085221-18085701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 228
               

               
Conread position:
               
340-822
               

               
Cow position:
               
chr29:87367-86881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 61
               

               
Conread position:
               
340-822
               

               
Cow position:
               
chr29:17408979-17409464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 89
               

               
Conread position:
               
340-825
               

               
Cow position:
               
chr29:10156643-10156174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 123
               

               
Conread position:
               
340-825
               

               
Cow position:
               
chr29:32290248-32290742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 325
               

               
Conread position:
               
340-826
               

               
Cow position:
               
chr29:15738698-15738207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 140
               

               
Conread position:
               
340-868
               

               
Cow position:
               
chr29:21933480-21932946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 64
               

               
Conread position:
               
340-873
               

               
Cow position:
               
chr29:38581615-38582150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 118
               

               
Conread position:
               
340-878
               

               
Cow position:
               
chr29:13639707-13639184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 106
               

               
Conread position:
               
340-880
               

               
Cow position:
               
chr29:20933352-20933902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 46
               

               
Conread position:
               
340-880
               

               
Cow position:
               
chr29:32963186-32963710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 335
               

               
Conread position:
               
340-882
               

               
Cow position:
               
chr29:5892496-5893035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 79
               

               
Conread position:
               
340-882
               

               
Cow position:
               
chr29:26778537-26779065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 80
               

               
Conread position:
               
340-882
               

               
Cow position:
               
chr29:43328284-43328821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 26
               

               
Conread position:
               
340-885
               

               
Cow position:
               
chr29:21443698-21443149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 335
               

               
Conread position:
               
340-886
               

               
Cow position:
               
chr29:4480528-4479974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 125
               

               
Conread position:
               
340-886
               

               
Cow position:
               
chr29:24952332-24952880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 123
               

               
Conread position:
               
340-889
               

               
Cow position:
               
chr29:34746008-34745465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 118
               

               
Conread position:
               
340-890
               

               
Cow position:
               
chr29:27833633-27834187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 304
               

               
Conread position:
               
340-891
               

               
Cow position:
               
chr29:1307217-1306665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 28
               

               
Conread position:
               
340-891
               

               
Cow position:
               
chr29:4875258-4874692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 449
               

               
Conread position:
               
340-891
               

               
Cow position:
               
chr29:19756094-19756635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 286
               

               
Conread position:
               
340-891
               

               
Cow position:
               
chr29:21197004-21196454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 118
               

               
Conread position:
               
340-891
               

               
Cow position:
               
chr29:35406139-35405592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 56
               

               
Conread position:
               
340-892
               

               
Cow position:
               
chr29:19125006-19125529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 127
               

               
Conread position:
               
340-894
               

               
Cow position:
               
chr29:31786324-31786875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 177
               

               
Conread position:
               
340-896
               

               
Cow position:
               
chr29:35501999-35501463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 80
               

               
Conread position:
               
340-897
               

               
Cow position:
               
chr29:32800061-32799499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 219
               

               
Conread position:
               
340-897
               

               
Cow position:
               
chr29:35459113-35458564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 69
               

               
Conread position:
               
340-898
               

               
Cow position:
               
chr29:36530510-36531071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 43
               

               
Conread position:
               
340-899
               

               
Cow position:
               
chr29:2744626-2744062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 436
               

               
Conread position:
               
340-899
               

               
Cow position:
               
chr29:19761921-19762469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 80
               

               
Conread position:
               
340-900
               

               
Cow position:
               
chr29:2837412-2836844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
211, 279
               

               
Conread position:
               
340-900
               

               
Cow position:
               
chr29:25695667-25695093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
211, 308
               

               
Conread position:
               
341-486
               

               
Cow position:
               
chr29:28503740-28503884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
341-539
               

               
Cow position:
               
chr29:25423472-25423669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
117, 72
               

               
Conread position:
               
341-545
               

               
Cow position:
               
chr29:26285381-26285183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
197, 69
               

               
Conread position:
               
341-548
               

               
Cow position:
               
chr29:38247098-38246892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
167, 117
               

               
Conread position:
               
341-549
               

               
Cow position:
               
chr29:13101788-13101983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
341-549
               

               
Cow position:
               
chr29:14888768-14888975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
341-549
               

               
Cow position:
               
chr29:24260190-24259986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
341-549
               

               
Cow position:
               
chr29:38229880-38230088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
341-550
               

               
Cow position:
               
chr29:19857338-19857551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
341-551
               

               
Cow position:
               
chr29:21227855-21228065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
341-553
               

               
Cow position:
               
chr29:28621623-28621421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
341-556
               

               
Cow position:
               
chr29:10145597-10145382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
341-562
               

               
Cow position:
               
chr29:44598176-44597955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
118, 158
               

               
Conread position:
               
341-565
               

               
Cow position:
               
chr29:37719559-37719777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
341-568
               

               
Cow position:
               
chr29:31093682-31093457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
341-605
               

               
Cow position:
               
chr29:29504704-29504440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
183, 117
               

               
Conread position:
               
341-628
               

               
Cow position:
               
chr29:26519812-26519519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
204, 35
               

               
Conread position:
               
341-637
               

               
Cow position:
               
chr29:30028784-30028476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 0
               

               
Conread position:
               
341-654
               

               
Cow position:
               
chr29:296180-295855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
80, 176
               

               
Conread position:
               
341-662
               

               
Cow position:
               
chr29:7750227-7749916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
341-668
               

               
Cow position:
               
chr29:1956439-1956113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
95, 34
               

               
Conread position:
               
341-670
               

               
Cow position:
               
chr29:528643-528304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 310
               

               
Conread position:
               
341-673
               

               
Cow position:
               
chr29:1933913-1933571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 311
               

               
Conread position:
               
341-720
               

               
Cow position:
               
chr29:2308927-2309307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 112
               

               
Conread position:
               
341-740
               

               
Cow position:
               
chr29:31926643-31926240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 156
               

               
Conread position:
               
341-753
               

               
Cow position:
               
chr29:133837-134238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
77, 229
               

               
Conread position:
               
341-768
               

               
Cow position:
               
chr29:16348089-16348521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
210, 79
               

               
Conread position:
               
341-771
               

               
Cow position:
               
chr29:24728421-24727980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
211, 289
               

               
Conread position:
               
341-803
               

               
Cow position:
               
chr29:6293817-6293369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 79
               

               
Conread position:
               
341-824
               

               
Cow position:
               
chr29:40096612-40097093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 118
               

               
Conread position:
               
341-891
               

               
Cow position:
               
chr29:24623889-24624440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
341-896
               

               
Cow position:
               
chr29:3584478-3583913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
210, 332
               

               
Conread position:
               
341-897
               

               
Cow position:
               
chr29:16609387-16609956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 61
               

               
Conread position:
               
341-897
               

               
Cow position:
               
chr29:20674161-20673603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 201
               

               
Conread position:
               
341-897
               

               
Cow position:
               
chr29:29589267-29588720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 79
               

               
Conread position:
               
342-506
               

               
Cow position:
               
chr29:5187137-5186975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
136, 70
               

               
Conread position:
               
342-525
               

               
Cow position:
               
chr29:27588339-27588516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
342-565
               

               
Cow position:
               
chr29:4221034-4221248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
342-568
               

               
Cow position:
               
chr29:12610977-12611203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
342-587
               

               
Cow position:
               
chr29:10225378-10225136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
211, 85
               

               
Conread position:
               
342-609
               

               
Cow position:
               
chr29:32732982-32733240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
203, 59
               

               
Conread position:
               
342-611
               

               
Cow position:
               
chr29:16082766-16083040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 132
               

               
Conread position:
               
342-644
               

               
Cow position:
               
chr29:26335730-26335419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
217, 196
               

               
Conread position:
               
342-655
               

               
Cow position:
               
chr29:39425133-39425458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
211, 0
               

               
Conread position:
               
342-668
               

               
Cow position:
               
chr29:38271888-38272227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
79, 71
               

               
Conread position:
               
342-678
               

               
Cow position:
               
chr29:32543998-32544344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
210, 309
               

               
Conread position:
               
342-755
               

               
Cow position:
               
chr29:28883728-28884145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 187
               

               
Conread position:
               
342-758
               

               
Cow position:
               
chr29:26994913-26995325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
228, 88
               

               
Conread position:
               
342-773
               

               
Cow position:
               
chr29:13128269-13127827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
223, 311
               

               
Conread position:
               
342-790
               

               
Cow position:
               
chr29:28868279-28868742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 295
               

               
Conread position:
               
342-802
               

               
Cow position:
               
chr29:17607064-17607527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 319
               

               
Conread position:
               
342-802
               

               
Cow position:
               
chr29:39567334-39567792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 118
               

               
Conread position:
               
342-889
               

               
Cow position:
               
chr29:40764023-40763500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 78
               

               
Conread position:
               
342-897
               

               
Cow position:
               
chr29:35434518-35435063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 260
               

               
Conread position:
               
342-900
               

               
Cow position:
               
chr29:23154874-23155442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 71
               

               
Conread position:
               
343-562
               

               
Cow position:
               
chr29:20244935-20245149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
343-689
               

               
Cow position:
               
chr29:4327144-4327490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
144, 115
               

               
Conread position:
               
343-807
               

               
Cow position:
               
chr29:9911811-9912291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 442
               

               
Conread position:
               
345-565
               

               
Cow position:
               
chr29:18338894-18338675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
346-541
               

               
Cow position:
               
chr29:2715789-2715988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
346-546
               

               
Cow position:
               
chr29:13403317-13403516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
174, 111
               

               
Conread position:
               
346-550
               

               
Cow position:
               
chr29:37470922-37470712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
346-560
               

               
Cow position:
               
chr29:32870889-32871102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
346-568
               

               
Cow position:
               
chr29:5977469-5977248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
346-663
               

               
Cow position:
               
chr29:29550975-29551293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
217, 72
               

               
Conread position:
               
346-772
               

               
Cow position:
               
chr29:40656340-40656780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
83, 303
               

               
Conread position:
               
346-891
               

               
Cow position:
               
chr29:1325093-1325644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 117
               

               
Conread position:
               
347-564
               

               
Cow position:
               
chr29:15041858-15042064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
347-565
               

               
Cow position:
               
chr29:23541609-23541391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
347-653
               

               
Cow position:
               
chr29:44233296-44232985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
197, 215
               

               
Conread position:
               
347-658
               

               
Cow position:
               
chr29:18748928-18748625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 70
               

               
Conread position:
               
347-688
               

               
Cow position:
               
chr29:8125940-8125591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 118
               

               
Conread position:
               
347-755
               

               
Cow position:
               
chr29:28113607-28113208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
198, 59
               

               
Conread position:
               
347-900
               

               
Cow position:
               
chr29:11398274-11397704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
89, 126
               

               
Conread position:
               
350-550
               

               
Cow position:
               
chr29:15828566-15828369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
350-551
               

               
Cow position:
               
chr29:21237116-21237316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
350-564
               

               
Cow position:
               
chr29:22339562-22339347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 78
               

               
Conread position:
               
350-568
               

               
Cow position:
               
chr29:21640067-21639849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
350-638
               

               
Cow position:
               
chr29:16612296-16612007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
217, 76
               

               
Conread position:
               
350-644
               

               
Cow position:
               
chr29:2136443-2136155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
135, 197
               

               
Conread position:
               
350-644
               

               
Cow position:
               
chr29:29477376-29477077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
180, 254
               

               
Conread position:
               
350-650
               

               
Cow position:
               
chr29:42406319-42406635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
201, 108
               

               
Conread position:
               
350-659
               

               
Cow position:
               
chr29:21535031-21534702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
76, 29
               

               
Conread position:
               
350-663
               

               
Cow position:
               
chr29:26223989-26224310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
36, 189
               

               
Conread position:
               
350-689
               

               
Cow position:
               
chr29:9078919-9078574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
44, 184
               

               
Conread position:
               
350-689
               

               
Cow position:
               
chr29:15251738-15252085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
72, 63
               

               
Conread position:
               
350-718
               

               
Cow position:
               
chr29:9686353-9685980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 177
               

               
Conread position:
               
350-720
               

               
Cow position:
               
chr29:5425969-5425591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
220, 314
               

               
Conread position:
               
350-720
               

               
Cow position:
               
chr29:16035509-16035129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
127, 303
               

               
Conread position:
               
350-725
               

               
Cow position:
               
chr29:25958044-25957661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
203, 301
               

               
Conread position:
               
350-749
               

               
Cow position:
               
chr29:42848886-42849283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
181, 64
               

               
Conread position:
               
350-755
               

               
Cow position:
               
chr29:6935371-6935784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
201, 301
               

               
Conread position:
               
350-755
               

               
Cow position:
               
chr29:19514450-19514046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
190, 262
               

               
Conread position:
               
350-808
               

               
Cow position:
               
chr29:22935940-22936386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
423, 36
               

               
Conread position:
               
350-812
               

               
Cow position:
               
chr29:22895385-22895847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
350-846
               

               
Cow position:
               
chr29:28775792-28775310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 46
               

               
Conread position:
               
350-882
               

               
Cow position:
               
chr29:40583453-40583974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 305
               

               
Conread position:
               
350-890
               

               
Cow position:
               
chr29:40117227-40117762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 63
               

               
Conread position:
               
350-891
               

               
Cow position:
               
chr29:17109628-17110151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 42
               

               
Conread position:
               
350-900
               

               
Cow position:
               
chr29:4120508-4121063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 70
               

               
Conread position:
               
351-522
               

               
Cow position:
               
chr29:26415758-26415929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
351-549
               

               
Cow position:
               
chr29:5897072-5896874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
120, 132
               

               
Conread position:
               
351-549
               

               
Cow position:
               
chr29:8968776-8968973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
351-823
               

               
Cow position:
               
chr29:26290924-26290458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
218, 62
               

               
Conread position:
               
352-518
               

               
Cow position:
               
chr29:31899362-31899199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
352-518
               

               
Cow position:
               
chr29:41347209-41347371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
29, 14
               

               
Conread position:
               
353-657
               

               
Cow position:
               
chr29:37292432-37292750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
71, 30
               

               
Conread position:
               
353-678
               

               
Cow position:
               
chr29:17773600-17773934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
68, 60
               

               
Conread position:
               
353-726
               

               
Cow position:
               
chr29:12005105-12004727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 105
               

               
Conread position:
               
353-891
               

               
Cow position:
               
chr29:1021928-1022491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
54, 339
               

               
Conread position:
               
353-897
               

               
Cow position:
               
chr29:35630754-35630206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 67
               

               
Conread position:
               
354-564
               

               
Cow position:
               
chr29:6014757-6014967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
75, 144
               

               
Conread position:
               
354-568
               

               
Cow position:
               
chr29:37310932-37311137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
354-568
               

               
Cow position:
               
chr29:37451964-37452175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
354-573
               

               
Cow position:
               
chr29:7697773-7697993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
213, 0
               

               
Conread position:
               
354-898
               

               
Cow position:
               
chr29:40892054-40891502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
79, 323
               

               
Conread position:
               
354-900
               

               
Cow position:
               
chr29:20626237-20626777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 117
               

               
Conread position:
               
356-568
               

               
Cow position:
               
chr29:1582963-1582753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
356-657
               

               
Cow position:
               
chr29:36037374-36037672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
178, 112
               

               
Conread position:
               
356-771
               

               
Cow position:
               
chr29:8415596-8416014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
92, 129
               

               
Conread position:
               
358-567
               

               
Cow position:
               
chr29:27000450-27000653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
358-802
               

               
Cow position:
               
chr29:19907022-19907466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
7, 60
               

               
Conread position:
               
358-896
               

               
Cow position:
               
chr29:10058863-10058340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 176
               

               
Conread position:
               
361-678
               

               
Cow position:
               
chr29:28696500-28696175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
187, 24
               

               
Conread position:
               
362-562
               

               
Cow position:
               
chr29:12901436-12901245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
362-568
               

               
Cow position:
               
chr29:29121565-29121367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
98, 53
               

               
Conread position:
               
363-551
               

               
Cow position:
               
chr29:32176430-32176613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
367-563
               

               
Cow position:
               
chr29:36541451-36541644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
367-564
               

               
Cow position:
               
chr29:20616608-20616411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
367-590
               

               
Cow position:
               
chr29:16057132-16056905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
51, 176
               

               
Conread position:
               
367-653
               

               
Cow position:
               
chr29:7408217-7407922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
368-568
               

               
Cow position:
               
chr29:13391195-13390995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
368-689
               

               
Cow position:
               
chr29:28273711-28273390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
177, 28
               

               
Conread position:
               
373-751
               

               
Cow position:
               
chr29:43195672-43196054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
168, 289
               

               
Conread position:
               
374-568
               

               
Cow position:
               
chr29:1445704-1445898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
374-568
               

               
Cow position:
               
chr29:3782804-3782610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
104, 94
               

               
Conread position:
               
374-657
               

               
Cow position:
               
chr29:8645399-8645681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
374-663
               

               
Cow position:
               
chr29:14037033-14036743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
39, 47
               

               
Conread position:
               
374-712
               

               
Cow position:
               
chr29:20178450-20178113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
61, 104
               

               
Conread position:
               
374-720
               

               
Cow position:
               
chr29:18603867-18603513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
179, 294
               

               
Conread position:
               
374-759
               

               
Cow position:
               
chr29:32521543-32521938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 95
               

               
Conread position:
               
374-771
               

               
Cow position:
               
chr29:14207342-14206939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 280
               

               
Conread position:
               
374-825
               

               
Cow position:
               
chr29:13372346-13372795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 50
               

               
Conread position:
               
374-898
               

               
Cow position:
               
chr29:16657371-16657896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 89
               

               
Conread position:
               
375-647
               

               
Cow position:
               
chr29:8164181-8163898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
88, 24
               

               
Conread position:
               
377-537
               

               
Cow position:
               
chr29:26559834-26559678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
377-673
               

               
Cow position:
               
chr29:8630391-8630089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
87, 268
               

               
Conread position:
               
377-706
               

               
Cow position:
               
chr29:4328117-4328433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
378-891
               

               
Cow position:
               
chr29:10838634-10839137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 275
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr29:29338131-29337947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
42, 90
               

               
Conread position:
               
380-568
               

               
Cow position:
               
chr29:21478628-21478440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
380-568
               

               
Cow position:
               
chr29:22021099-22020911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
380-655
               

               
Cow position:
               
chr29:2490579-2490866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
380-689
               

               
Cow position:
               
chr29:27976556-27976240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 56
               

               
Conread position:
               
381-757
               

               
Cow position:
               
chr29:2071881-2071505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 77
               

               
Conread position:
               
382-568
               

               
Cow position:
               
chr29:39446465-39446279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
382-705
               

               
Cow position:
               
chr29:44310340-44310013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
166, 48
               

               
Conread position:
               
382-731
               

               
Cow position:
               
chr29:43312107-43311753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
156, 81
               

               
Conread position:
               
382-897
               

               
Cow position:
               
chr29:4625305-4624793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 128
               

               
Conread position:
               
383-764
               

               
Cow position:
               
chr29:10456863-10456492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 83
               

               
Conread position:
               
384-549
               

               
Cow position:
               
chr29:14892267-14892102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
384-637
               

               
Cow position:
               
chr29:24650675-24650410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
385-568
               

               
Cow position:
               
chr29:16171006-16170822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
8, 108
               

               
Conread position:
               
385-662
               

               
Cow position:
               
chr29:7848417-7848706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
73, 107
               

               
Conread position:
               
388-545
               

               
Cow position:
               
chr29:20594732-20594888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
388-751
               

               
Cow position:
               
chr29:28128781-28128416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
153, 248
               

               
Conread position:
               
388-843
               

               
Cow position:
               
chr29:7965948-7966395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
205, 34
               

               
Conread position:
               
389-568
               

               
Cow position:
               
chr29:34610027-34609850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 48
               

               
Conread position:
               
389-661
               

               
Cow position:
               
chr29:24197933-24197670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 19
               

               
Conread position:
               
389-705
               

               
Cow position:
               
chr29:26734728-26735043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 193
               

               
Conread position:
               
389-882
               

               
Cow position:
               
chr29:2644613-2644132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
37, 82
               

               
Conread position:
               
390-565
               

               
Cow position:
               
chr29:38760455-38760290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
391-565
               

               
Cow position:
               
chr29:22720829-22720997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
392-533
               

               
Cow position:
               
chr29:40960220-40960081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
392-535
               

               
Cow position:
               
chr29:27825942-27826086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
26, 68
               

               
Conread position:
               
392-568
               

               
Cow position:
               
chr29:35403847-35403671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
395-772
               

               
Cow position:
               
chr29:42459846-42460220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
77, 68
               

               
Conread position:
               
397-664
               

               
Cow position:
               
chr29:21000345-21000622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
397-755
               

               
Cow position:
               
chr29:45589882-45589524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 75
               

               
Conread position:
               
397-769
               

               
Cow position:
               
chr29:17401-17034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 16
               

               
Conread position:
               
398-661
               

               
Cow position:
               
chr29:603606-603341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
38, 68
               

               
Conread position:
               
398-812
               

               
Cow position:
               
chr29:37961268-37960856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
119, 40
               

               
Conread position:
               
399-553
               

               
Cow position:
               
chr29:28397865-28397714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
399-568
               

               
Cow position:
               
chr29:15841404-15841573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
400-689
               

               
Cow position:
               
chr29:1709625-1709916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
88, 13
               

               
Conread position:
               
401-528
               

               
Cow position:
               
chr29:29171342-29171469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
401-813
               

               
Cow position:
               
chr29:43252980-43252551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 62
               

               
Conread position:
               
402-753
               

               
Cow position:
               
chr29:26771149-26771501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 56
               

               
Conread position:
               
402-824
               

               
Cow position:
               
chr29:6844921-6844499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 61
               

               
Conread position:
               
403-716
               

               
Cow position:
               
chr29:9917674-9917353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
150, 248
               

               
Conread position:
               
404-541
               

               
Cow position:
               
chr29:36329188-36329326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
99, 135
               

               
Conread position:
               
404-548
               

               
Cow position:
               
chr29:4087570-4087428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
407-533
               

               
Cow position:
               
chr29:33392284-33392411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
407-824
               

               
Cow position:
               
chr29:750185-749774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
128, 56
               

               
Conread position:
               
408-655
               

               
Cow position:
               
chr29:11114565-11114824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
409-559
               

               
Cow position:
               
chr29:24496277-24496428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
409-568
               

               
Cow position:
               
chr29:45588760-45588603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 116
               

               
Conread position:
               
410-564
               

               
Cow position:
               
chr29:10296724-10296574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
410-675
               

               
Cow position:
               
chr29:27726210-27726471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
169, 38
               

               
Conread position:
               
410-693
               

               
Cow position:
               
chr29:18364667-18364403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
148, 30
               

               
Conread position:
               
410-891
               

               
Cow position:
               
chr29:699893-699430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 40
               

               
Conread position:
               
412-587
               

               
Cow position:
               
chr29:5046555-5046378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
141, 12
               

               
Conread position:
               
412-614
               

               
Cow position:
               
chr29:17135569-17135773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
134, 38
               

               
Conread position:
               
412-891
               

               
Cow position:
               
chr29:18878783-18878284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 176
               

               
Conread position:
               
413-669
               

               
Cow position:
               
chr29:3502778-3503034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
28, 56
               

               
Conread position:
               
413-671
               

               
Cow position:
               
chr29:14097413-14097143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
413-689
               

               
Cow position:
               
chr29:24033515-24033797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
96, 238
               

               
Conread position:
               
413-705
               

               
Cow position:
               
chr29:479105-479398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
163, 243
               

               
Conread position:
               
413-762
               

               
Cow position:
               
chr29:40165962-40166315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 12
               

               
Conread position:
               
414-891
               

               
Cow position:
               
chr29:5062852-5063341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 49
               

               
Conread position:
               
414-896
               

               
Cow position:
               
chr29:42364294-42363816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 54
               

               
Conread position:
               
415-524
               

               
Cow position:
               
chr29:4002406-4002515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
416-662
               

               
Cow position:
               
chr29:19601614-19601379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
133, 10
               

               
Conread position:
               
418-568
               

               
Cow position:
               
chr29:23135171-23135017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 102
               

               
Conread position:
               
418-663
               

               
Cow position:
               
chr29:3395834-3396082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
418-686
               

               
Cow position:
               
chr29:35636148-35636427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
78, 111
               

               
Conread position:
               
418-880
               

               
Cow position:
               
chr29:39111584-39111137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 89
               

               
Conread position:
               
418-891
               

               
Cow position:
               
chr29:14501318-14501793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 49
               

               
Conread position:
               
418-891
               

               
Cow position:
               
chr29:27816097-27816534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
419-568
               

               
Cow position:
               
chr29:2263302-2263152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
16, 5
               

               
Conread position:
               
419-655
               

               
Cow position:
               
chr29:4065814-4066055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
19, 5
               

               
Conread position:
               
419-825
               

               
Cow position:
               
chr29:25333728-25333327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 44
               

               
Conread position:
               
419-829
               

               
Cow position:
               
chr29:24604423-24603999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
147, 45
               

               
Conread position:
               
420-549
               

               
Cow position:
               
chr29:7290622-7290748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
420-643
               

               
Cow position:
               
chr29:32809188-32809407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
107, 19
               

               
Conread position:
               
420-796
               

               
Cow position:
               
chr29:13634575-13634193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
5, 55
               

               
Conread position:
               
424-666
               

               
Cow position:
               
chr29:22957604-22957367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
103, 113
               

               
Conread position:
               
424-899
               

               
Cow position:
               
chr29:26673173-26672693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 40
               

               
Conread position:
               
425-523
               

               
Cow position:
               
chr29:1886946-1886847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
425-568
               

               
Cow position:
               
chr29:254812-254955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
136, 132
               

               
Conread position:
               
425-568
               

               
Cow position:
               
chr29:2626191-2626057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
425-616
               

               
Cow position:
               
chr29:30367292-30367108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
126, 74
               

               
Conread position:
               
425-619
               

               
Cow position:
               
chr29:13458795-13458991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
110, 7
               

               
Conread position:
               
425-728
               

               
Cow position:
               
chr29:42268422-42268734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
142, 251
               

               
Conread position:
               
425-759
               

               
Cow position:
               
chr29:9139139-9139489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
425-790
               

               
Cow position:
               
chr29:2984618-2984989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 43
               

               
Conread position:
               
425-879
               

               
Cow position:
               
chr29:477838-478296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
141, 24
               

               
Conread position:
               
426-568
               

               
Cow position:
               
chr29:26129231-26129371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
426-656
               

               
Cow position:
               
chr29:2885715-2885492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
117, 43
               

               
Conread position:
               
426-660
               

               
Cow position:
               
chr29:2522310-2522541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
121, 73
               

               
Conread position:
               
426-663
               

               
Cow position:
               
chr29:11634554-11634799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
79, 71
               

               
Conread position:
               
426-664
               

               
Cow position:
               
chr29:23743305-23743075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
219, 37
               

               
Conread position:
               
426-742
               

               
Cow position:
               
chr29:32655692-32655379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 27
               

               
Conread position:
               
426-762
               

               
Cow position:
               
chr29:5099030-5098695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
200, 126
               

               
Conread position:
               
426-802
               

               
Cow position:
               
chr29:18694989-18695362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
163, 112
               

               
Conread position:
               
426-804
               

               
Cow position:
               
chr29:9938335-9937970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
426-824
               

               
Cow position:
               
chr29:25088485-25088873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 173
               

               
Conread position:
               
426-889
               

               
Cow position:
               
chr29:7956254-7955792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 130
               

               
Conread position:
               
426-890
               

               
Cow position:
               
chr29:12784224-12783758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 233
               

               
Conread position:
               
426-891
               

               
Cow position:
               
chr29:21682777-21682312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
119, 41
               

               
Conread position:
               
426-897
               

               
Cow position:
               
chr29:16195584-16196060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
122, 111
               

               
Conread position:
               
426-900
               

               
Cow position:
               
chr29:2623748-2623273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 242
               

               
Conread position:
               
426-900
               

               
Cow position:
               
chr29:12679886-12680364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
426-900
               

               
Cow position:
               
chr29:27668910-27668444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
427-891
               

               
Cow position:
               
chr29:17463046-17462581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
38, 61
               

               
Conread position:
               
427-896
               

               
Cow position:
               
chr29:22069014-22068538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 93
               

               
Conread position:
               
428-541
               

               
Cow position:
               
chr29:43516947-43516834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
428-565
               

               
Cow position:
               
chr29:41076294-41076156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
428-632
               

               
Cow position:
               
chr29:4691952-4691733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
428-828
               

               
Cow position:
               
chr29:109444-109823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
380, 35
               

               
Conread position:
               
428-895
               

               
Cow position:
               
chr29:41530586-41531054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 17
               

               
Conread position:
               
430-563
               

               
Cow position:
               
chr29:26137522-26137654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
430-567
               

               
Cow position:
               
chr29:30227400-30227536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
67, 73
               

               
Conread position:
               
430-654
               

               
Cow position:
               
chr29:5919589-5919355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
430-739
               

               
Cow position:
               
chr29:41747180-41747496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
105, 19
               

               
Conread position:
               
430-808
               

               
Cow position:
               
chr29:13615907-13615540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
102, 54
               

               
Conread position:
               
430-880
               

               
Cow position:
               
chr29:4492301-4491866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
136, 86
               

               
Conread position:
               
430-900
               

               
Cow position:
               
chr29:22175429-22175896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 34
               

               
Conread position:
               
430-900
               

               
Cow position:
               
chr29:29769610-29769148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 92
               

               
Conread position:
               
431-812
               

               
Cow position:
               
chr29:12761704-12762075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
431-882
               

               
Cow position:
               
chr29:31928716-31929175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 54
               

               
Conread position:
               
432-728
               

               
Cow position:
               
chr29:35742903-35742616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
432-808
               

               
Cow position:
               
chr29:37599466-37599105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
109, 31
               

               
Conread position:
               
432-825
               

               
Cow position:
               
chr29:94807-94434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
100, 38
               

               
Conread position:
               
433-650
               

               
Cow position:
               
chr29:16756794-16757021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
128, 30
               

               
Conread position:
               
433-790
               

               
Cow position:
               
chr29:44236207-44236552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
194, 31
               

               
Conread position:
               
433-897
               

               
Cow position:
               
chr29:3237620-3237142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 125
               

               
Conread position:
               
433-899
               

               
Cow position:
               
chr29:27009157-27009628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
132, 176
               

               
Conread position:
               
433-900
               

               
Cow position:
               
chr29:22613174-22613627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 34
               

               
Conread position:
               
434-540
               

               
Cow position:
               
chr29:38731365-38731468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
434-568
               

               
Cow position:
               
chr29:6813183-6813315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
434-662
               

               
Cow position:
               
chr29:21236856-21237090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
99, 83
               

               
Conread position:
               
434-668
               

               
Cow position:
               
chr29:4804973-4805213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
111, 177
               

               
Conread position:
               
434-755
               

               
Cow position:
               
chr29:19389226-19389542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
101, 63
               

               
Conread position:
               
434-762
               

               
Cow position:
               
chr29:26318934-26319237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
105, 29
               

               
Conread position:
               
435-709
               

               
Cow position:
               
chr29:35738529-35738254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
135, 217
               

               
Conread position:
               
435-891
               

               
Cow position:
               
chr29:35677801-35677343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 13
               

               
Conread position:
               
436-822
               

               
Cow position:
               
chr29:26298724-26299097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
111, 57
               

               
Conread position:
               
436-825
               

               
Cow position:
               
chr29:4194379-4193996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
127, 71
               

               
Conread position:
               
436-891
               

               
Cow position:
               
chr29:34297823-34297373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 129
               

               
Conread position:
               
437-654
               

               
Cow position:
               
chr29:29312772-29312553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
98, 73
               

               
Conread position:
               
437-660
               

               
Cow position:
               
chr29:34736722-34736495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
105, 26
               

               
Conread position:
               
437-812
               

               
Cow position:
               
chr29:18021932-18021563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
95, 77
               

               
Conread position:
               
437-897
               

               
Cow position:
               
chr29:28674943-28674497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 130
               

               
Conread position:
               
438-824
               

               
Cow position:
               
chr29:8926715-8926326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 181
               

               
Conread position:
               
438-890
               

               
Cow position:
               
chr29:17222152-17222613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 226
               

               
Conread position:
               
438-896
               

               
Cow position:
               
chr29:22162509-22162062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 338
               

               
Conread position:
               
439-812
               

               
Cow position:
               
chr29:356071-356441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
93, 165
               

               
Conread position:
               
440-656
               

               
Cow position:
               
chr29:30545116-30544899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 64
               

               
Conread position:
               
440-725
               

               
Cow position:
               
chr29:31594369-31594093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
441-671
               

               
Cow position:
               
chr29:585029-585259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
91, 25
               

               
Conread position:
               
442-835
               

               
Cow position:
               
chr29:1556680-1557071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 158
               

               
Conread position:
               
442-896
               

               
Cow position:
               
chr29:35797641-35798108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
78, 74
               

               
Conread position:
               
442-900
               

               
Cow position:
               
chr29:13028205-13028657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 97
               

               
Conread position:
               
443-891
               

               
Cow position:
               
chr29:11562363-11562824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 185
               

               
Conread position:
               
444-897
               

               
Cow position:
               
chr29:23578025-23577579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
173, 7
               

               
Conread position:
               
444-897
               

               
Cow position:
               
chr29:25737667-25737215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 362
               

               
Conread position:
               
445-788
               

               
Cow position:
               
chr29:23984213-23983858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 220
               

               
Conread position:
               
445-802
               

               
Cow position:
               
chr29:20903537-20903179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 185
               

               
Conread position:
               
446-748
               

               
Cow position:
               
chr29:18735891-18735582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
107, 209
               

               
Conread position:
               
446-820
               

               
Cow position:
               
chr29:40852688-40853055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
137, 21
               

               
Conread position:
               
446-828
               

               
Cow position:
               
chr29:707193-706823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
104, 42
               

               
Conread position:
               
447-757
               

               
Cow position:
               
chr29:36183029-36183347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
100, 16
               

               
Conread position:
               
447-891
               

               
Cow position:
               
chr29:44378665-44378209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
448-791
               

               
Cow position:
               
chr29:10235361-10235034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
97, 56
               

               
Conread position:
               
451-653
               

               
Cow position:
               
chr29:32767764-32767557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
451-754
               

               
Cow position:
               
chr29:14615499-14615200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
81, 13
               

               
Conread position:
               
451-891
               

               
Cow position:
               
chr29:11915573-11916019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 282
               

               
Conread position:
               
452-812
               

               
Cow position:
               
chr29:16309508-16309862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
93, 70
               

               
Conread position:
               
452-898
               

               
Cow position:
               
chr29:25474665-25475138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
81, 233
               

               
Conread position:
               
453-737
               

               
Cow position:
               
chr29:24119978-24119694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
97, 213
               

               
Conread position:
               
453-900
               

               
Cow position:
               
chr29:27858550-27858994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
65, 178
               

               
Conread position:
               
455-812
               

               
Cow position:
               
chr29:26984989-26985347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
97, 39
               

               
Conread position:
               
455-824
               

               
Cow position:
               
chr29:39023577-39023205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
140, 346
               

               
Conread position:
               
456-883
               

               
Cow position:
               
chr29:1395368-1395762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
456-883
               

               
Cow position:
               
chr29:21706613-21706207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
304, 81
               

               
Conread position:
               
457-882
               

               
Cow position:
               
chr29:22714965-22714521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 209
               

               
Conread position:
               
457-891
               

               
Cow position:
               
chr29:24292638-24293068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
18, 44
               

               
Conread position:
               
457-896
               

               
Cow position:
               
chr29:4520098-4520536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 222
               

               
Conread position:
               
458-564
               

               
Cow position:
               
chr29:16735242-16735136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
458-793
               

               
Cow position:
               
chr29:24578640-24578965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 98
               

               
Conread position:
               
458-825
               

               
Cow position:
               
chr29:11704886-11705245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 76
               

               
Conread position:
               
458-896
               

               
Cow position:
               
chr29:19949073-19949507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 139
               

               
Conread position:
               
458-900
               

               
Cow position:
               
chr29:34773964-34773541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 58
               

               
Conread position:
               
459-756
               

               
Cow position:
               
chr29:24103784-24103476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 185
               

               
Conread position:
               
459-818
               

               
Cow position:
               
chr29:6286393-6286036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
83, 202
               

               
Conread position:
               
459-898
               

               
Cow position:
               
chr29:23697743-23698174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
82, 175
               

               
Conread position:
               
460-706
               

               
Cow position:
               
chr29:42886146-42886406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
460-880
               

               
Cow position:
               
chr29:34744851-34744444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
71, 159
               

               
Conread position:
               
460-897
               

               
Cow position:
               
chr29:23844597-23845045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
110, 196
               

               
Conread position:
               
461-874
               

               
Cow position:
               
chr29:19254056-19253648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
71, 201
               

               
Conread position:
               
464-719
               

               
Cow position:
               
chr29:39642946-39643204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
464-762
               

               
Cow position:
               
chr29:868542-868846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
89, 192
               

               
Conread position:
               
465-798
               

               
Cow position:
               
chr29:1229379-1229714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
102, 51
               

               
Conread position:
               
466-793
               

               
Cow position:
               
chr29:19821068-19821385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
70, 80
               

               
Conread position:
               
471-663
               

               
Cow position:
               
chr29:3711163-3711367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
472-644
               

               
Cow position:
               
chr29:2532839-2533016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
474-807
               

               
Cow position:
               
chr29:463874-463536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
66, 133
               

               
Conread position:
               
474-823
               

               
Cow position:
               
chr29:28166438-28166094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
474-896
               

               
Cow position:
               
chr29:28739408-28739830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
76, 161
               

               
Conread position:
               
477-771
               

               
Cow position:
               
chr29:35376469-35376763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 139
               

               
Conread position:
               
477-799
               

               
Cow position:
               
chr29:28446477-28446148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
89, 191
               

               
Conread position:
               
477-824
               

               
Cow position:
               
chr29:40299230-40298887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
76, 122
               

               
Conread position:
               
478-892
               

               
Cow position:
               
chr29:31489103-31489523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 48
               

               
Conread position:
               
479-731
               

               
Cow position:
               
chr29:14484761-14484497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
480-659
               

               
Cow position:
               
chr29:29262832-29263004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
171, 64
               

               
Conread position:
               
480-886
               

               
Cow position:
               
chr29:30440711-30441132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 46
               

               
Conread position:
               
481-778
               

               
Cow position:
               
chr29:44682304-44682016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
64, 30
               

               
Conread position:
               
481-891
               

               
Cow position:
               
chr29:22778395-22777983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
89, 186
               

               
Conread position:
               
482-891
               

               
Cow position:
               
chr29:38580763-38581190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
86, 199
               

               
Conread position:
               
482-900
               

               
Cow position:
               
chr29:6337450-6337859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
63, 179
               

               
Conread position:
               
483-820
               

               
Cow position:
               
chr29:26654252-26653916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
83, 145
               

               
Conread position:
               
489-893
               

               
Cow position:
               
chr29:22690014-22690427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
81, 177
               

               
Conread position:
               
491-771
               

               
Cow position:
               
chr29:14768314-14768038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
56, 150
               

               
Conread position:
               
491-874
               

               
Cow position:
               
chr29:17154572-17154943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
67, 39
               

               
Conread position:
               
492-758
               

               
Cow position:
               
chr29:43009287-43009017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
75, 56
               

               
Conread position:
               
492-886
               

               
Cow position:
               
chr29:26259273-26259669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
494-891
               

               
Cow position:
               
chr29:11433922-11434310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
40, 125
               

               
Conread position:
               
495-855
               

               
Cow position:
               
chr29:9718972-9718613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
72, 113
               

               
Conread position:
               
495-862
               

               
Cow position:
               
chr29:3100461-3100096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
75, 162
               

               
Conread position:
               
495-900
               

               
Cow position:
               
chr29:10818636-10818255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
72, 42
               

               
Conread position:
               
495-900
               

               
Cow position:
               
chr29:25091910-25092312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 12
               

               
Conread position:
               
497-807
               

               
Cow position:
               
chr29:11054051-11053745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
498-891
               

               
Cow position:
               
chr29:26275417-26275799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 131
               

               
Conread position:
               
502-769
               

               
Cow position:
               
chr29:30188533-30188274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 159
               

               
Conread position:
               
504-819
               

               
Cow position:
               
chr29:5186689-5186365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 90
               

               
Conread position:
               
504-895
               

               
Cow position:
               
chr29:44988972-44988592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 120
               

               
Conread position:
               
510-900
               

               
Cow position:
               
chr29:41113045-41112684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
89, 25
               

               
Conread position:
               
515-882
               

               
Cow position:
               
chr29:43099925-43099560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 89
               

               
Conread position:
               
519-820
               

               
Cow position:
               
chr29:40960015-40959721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
51, 8
               

               
Conread position:
               
523-828
               

               
Cow position:
               
chr29:31891698-31891397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 127
               

               
Conread position:
               
523-898
               

               
Cow position:
               
chr29:22029115-22028757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
524-884
               

               
Cow position:
               
chr29:18462718-18462363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
124, 91
               

               
Conread position:
               
525-890
               

               
Cow position:
               
chr29:31943690-31944066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 146
               

               
Conread position:
               
526-793
               

               
Cow position:
               
chr29:27826353-27826622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 96
               

               
Conread position:
               
526-822
               

               
Cow position:
               
chr29:24252066-24252362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
41, 102
               

               
Conread position:
               
527-825
               

               
Cow position:
               
chr29:23244051-23243746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 130
               

               
Conread position:
               
531-891
               

               
Cow position:
               
chr29:2055899-2056258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
14, 127
               

               
Conread position:
               
533-832
               

               
Cow position:
               
chr29:26416195-26416492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
54, 173
               

               
Conread position:
               
539-897
               

               
Cow position:
               
chr29:11666812-11667152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
19, 95
               

               
Conread position:
               
540-896
               

               
Cow position:
               
chr29:30227420-30227077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
553-891
               

               
Cow position:
               
chr29:35084357-35084025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
20, 89
               

               
Conread position:
               
560-897
               

               
Cow position:
               
chr29:7624049-7624369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
95, 47
               

               
Conread position:
               
565-748
               

               
Cow position:
               
chr29:17301407-17301591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 107
               

               
Conread position:
               
565-775
               

               
Cow position:
               
chr29:27329770-27329977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
565-802
               

               
Cow position:
               
chr29:29176737-29176506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
36, 30
               

               
Conread position:
               
565-809
               

               
Cow position:
               
chr29:4002774-4003008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
168, 32
               

               
Conread position:
               
565-823
               

               
Cow position:
               
chr29:29314777-29314518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
193, 90
               

               
Conread position:
               
565-825
               

               
Cow position:
               
chr29:27588801-27589055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
201, 50
               

               
Conread position:
               
565-880
               

               
Cow position:
               
chr29:34359102-34358792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 50
               

               
Conread position:
               
565-892
               

               
Cow position:
               
chr29:31674508-31674830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
86, 55
               

               
Conread position:
               
567-897
               

               
Cow position:
               
chr29:37618186-37618513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
96, 54
               

               
Conread position:
               
568-794
               

               
Cow position:
               
chr29:12626098-12625873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
568-879
               

               
Cow position:
               
chr29:27846350-27846670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
191, 54
               

               
Conread position:
               
568-891
               

               
Cow position:
               
chr29:28735162-28734849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
198, 48
               

               
Conread position:
               
568-892
               

               
Cow position:
               
chr29:5409259-5408943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
569-896
               

               
Cow position:
               
chr29:28814097-28813769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 97
               

               
Conread position:
               
575-895
               

               
Cow position:
               
chr29:11611727-11612050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
132, 77
               

               
Conread position:
               
576-890
               

               
Cow position:
               
chr29:5046541-5046850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
184, 79
               

               
Conread position:
               
577-884
               

               
Cow position:
               
chr29:21508460-21508156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
119, 95
               

               
Conread position:
               
577-891
               

               
Cow position:
               
chr29:1614815-1615125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
81, 103
               

               
Conread position:
               
578-754
               

               
Cow position:
               
chr29:29795494-29795319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
578-766
               

               
Cow position:
               
chr29:10018468-10018654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
578-818
               

               
Cow position:
               
chr29:21941490-21941730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
188, 73
               

               
Conread position:
               
578-882
               

               
Cow position:
               
chr29:40994999-40994690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
237, 74
               

               
Conread position:
               
578-887
               

               
Cow position:
               
chr29:24045884-24046192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
181, 87
               

               
Conread position:
               
578-891
               

               
Cow position:
               
chr29:20910803-20910492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 82
               

               
Conread position:
               
578-896
               

               
Cow position:
               
chr29:12025579-12025276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
578-897
               

               
Cow position:
               
chr29:29942839-29942521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
236, 81
               

               
Conread position:
               
578-900
               

               
Cow position:
               
chr29:1007707-1008028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
73, 118
               

               
Conread position:
               
580-803
               

               
Cow position:
               
chr29:6015015-6015238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
120, 85
               

               
Conread position:
               
580-812
               

               
Cow position:
               
chr29:8862585-8862360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
109, 75
               

               
Conread position:
               
580-871
               

               
Cow position:
               
chr29:17168298-17168583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
64, 85
               

               
Conread position:
               
580-891
               

               
Cow position:
               
chr29:5520612-5520286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
72, 219
               

               
Conread position:
               
580-891
               

               
Cow position:
               
chr29:17297027-17297336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 79
               

               
Conread position:
               
585-900
               

               
Cow position:
               
chr29:20243912-20243598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
6, 69
               

               
Conread position:
               
589-889
               

               
Cow position:
               
chr29:4418727-4419023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
171, 69
               

               
Conread position:
               
590-798
               

               
Cow position:
               
chr29:27873507-27873708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
593-823
               

               
Cow position:
               
chr29:2263091-2262863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
49, 64
               

               
Conread position:
               
597-890
               

               
Cow position:
               
chr29:23813126-23812851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
162, 19
               

               
Conread position:
               
598-772
               

               
Cow position:
               
chr29:20924814-20924988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 48
               

               
Conread position:
               
598-891
               

               
Cow position:
               
chr29:20167333-20167621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
168, 61
               

               
Conread position:
               
598-900
               

               
Cow position:
               
chr29:21665998-21666293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
599-883
               

               
Cow position:
               
chr29:15947083-15947359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
215, 31
               

               
Conread position:
               
601-897
               

               
Cow position:
               
chr29:32894182-32894462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
289, 43
               

               
Conread position:
               
602-900
               

               
Cow position:
               
chr29:20770258-20770550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 50
               

               
Conread position:
               
603-882
               

               
Cow position:
               
chr29:40873924-40874217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
156, 52
               

               
Conread position:
               
607-793
               

               
Cow position:
               
chr29:18012474-18012660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
607-900
               

               
Cow position:
               
chr29:22519210-22518913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
149, 56
               

               
Conread position:
               
609-891
               

               
Cow position:
               
chr29:36952378-36952114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
612-882
               

               
Cow position:
               
chr29:28840078-28840362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
192, 43
               

               
Conread position:
               
612-887
               

               
Cow position:
               
chr29:30548698-30548968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
267, 42
               

               
Conread position:
               
612-898
               

               
Cow position:
               
chr29:23220577-23220286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
165, 51
               

               
Conread position:
               
616-879
               

               
Cow position:
               
chr29:29324485-29324234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
189, 29
               

               
Conread position:
               
617-891
               

               
Cow position:
               
chr29:18450205-18449940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
149, 41
               

               
Conread position:
               
618-900
               

               
Cow position:
               
chr29:16290655-16290931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
141, 47
               

               
Conread position:
               
619-897
               

               
Cow position:
               
chr29:42630054-42630322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
198, 11
               

               
Conread position:
               
620-816
               

               
Cow position:
               
chr29:38978462-38978656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
177, 30
               

               
Conread position:
               
620-897
               

               
Cow position:
               
chr29:32656364-32656641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
146, 25
               

               
Conread position:
               
621-874
               

               
Cow position:
               
chr29:23825287-23825031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
20, 180
               

               
Conread position:
               
621-882
               

               
Cow position:
               
chr29:44139312-44139056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
621-898
               

               
Cow position:
               
chr29:38980137-38979876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
92, 30
               

               
Conread position:
               
628-758
               

               
Cow position:
               
chr29:31477176-31477046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
628-900
               

               
Cow position:
               
chr29:29923635-29923368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
270, 48
               

               
Conread position:
               
630-822
               

               
Cow position:
               
chr29:30708678-30708494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
630-832
               

               
Cow position:
               
chr29:31200198-31200398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
630-877
               

               
Cow position:
               
chr29:43544659-43544421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
630-886
               

               
Cow position:
               
chr29:30681769-30681510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
185, 35
               

               
Conread position:
               
631-896
               

               
Cow position:
               
chr29:22167138-22166885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
640-882
               

               
Cow position:
               
chr29:28066442-28066669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
642-898
               

               
Cow position:
               
chr29:44991471-44991218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
224, 13
               

               
Conread position:
               
643-796
               

               
Cow position:
               
chr29:30918504-30918654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
645-900
               

               
Cow position:
               
chr29:4070582-4070829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
238, 79
               

               
Conread position:
               
648-900
               

               
Cow position:
               
chr29:31651365-31651609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
17, 141
               

               
Conread position:
               
651-896
               

               
Cow position:
               
chr29:27911553-27911796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
116, 63
               

               
Conread position:
               
652-891
               

               
Cow position:
               
chr29:38858252-38858014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
114, 122
               

               
Conread position:
               
653-891
               

               
Cow position:
               
chr29:22735144-22734907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
11, 76
               

               
Conread position:
               
654-891
               

               
Cow position:
               
chr29:26540577-26540342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
140, 148
               

               
Conread position:
               
657-900
               

               
Cow position:
               
chr29:19909922-19910170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
103, 139
               

               
Conread position:
               
658-879
               

               
Cow position:
               
chr29:32197664-32197880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
659-880
               

               
Cow position:
               
chr29:17804502-17804717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 90
               

               
Conread position:
               
659-889
               

               
Cow position:
               
chr29:24188097-24187867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
129, 108
               

               
Conread position:
               
659-900
               

               
Cow position:
               
chr29:39038301-39038059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
224, 166
               

               
Conread position:
               
660-886
               

               
Cow position:
               
chr29:9310569-9310796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
77, 69
               

               
Conread position:
               
660-891
               

               
Cow position:
               
chr29:36357098-36357326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
19, 14
               

               
Conread position:
               
660-897
               

               
Cow position:
               
chr29:4423471-4423246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
19, 141
               

               
Conread position:
               
660-897
               

               
Cow position:
               
chr29:16278957-16279181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
196, 64
               

               
Conread position:
               
665-891
               

               
Cow position:
               
chr29:28420729-28420955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
23, 58
               

               
Conread position:
               
666-874
               

               
Cow position:
               
chr29:22723576-22723777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
667-815
               

               
Cow position:
               
chr29:742673-742530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
668-889
               

               
Cow position:
               
chr29:7290753-7290966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
212, 130
               

               
Conread position:
               
669-896
               

               
Cow position:
               
chr29:9378614-9378837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
10, 132
               

               
Conread position:
               
674-897
               

               
Cow position:
               
chr29:38754956-38754733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
64, 95
               

               
Conread position:
               
676-897
               

               
Cow position:
               
chr29:29308587-29308378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 125
               

               
Conread position:
               
677-897
               

               
Cow position:
               
chr29:16200492-16200271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
141, 123
               

               
Conread position:
               
678-891
               

               
Cow position:
               
chr29:19363698-19363906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
680-891
               

               
Cow position:
               
chr29:36781315-36781112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
681-882
               

               
Cow position:
               
chr29:22729558-22729754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
681-891
               

               
Cow position:
               
chr29:32656102-32655896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 95
               

               
Conread position:
               
687-891
               

               
Cow position:
               
chr29:15797948-15798149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
132, 111
               

               
Conread position:
               
687-897
               

               
Cow position:
               
chr29:936206-936407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
690-886
               

               
Cow position:
               
chr29:43088310-43088499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
695-886
               

               
Cow position:
               
chr29:26539239-26539424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
71, 78
               

               
Conread position:
               
695-889
               

               
Cow position:
               
chr29:25288919-25288724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
132, 56
               

               
Conread position:
               
698-882
               

               
Cow position:
               
chr29:8634661-8634841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
698-891
               

               
Cow position:
               
chr29:629545-629735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
698-891
               

               
Cow position:
               
chr29:5953852-5953658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 67
               

               
Conread position:
               
698-891
               

               
Cow position:
               
chr29:19187033-19187224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
698-896
               

               
Cow position:
               
chr29:501204-501406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
106, 152
               

               
Conread position:
               
698-897
               

               
Cow position:
               
chr29:8163822-8163623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
121, 102
               

               
Conread position:
               
700-891
               

               
Cow position:
               
chr29:9800659-9800857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
60, 52
               

               
Conread position:
               
700-896
               

               
Cow position:
               
chr29:14576868-14577060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 73
               

               
Conread position:
               
701-890
               

               
Cow position:
               
chr29:4441195-4441008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
16, 73
               

               
Conread position:
               
701-890
               

               
Cow position:
               
chr29:40351065-40350883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
182, 23
               

               
Conread position:
               
702-896
               

               
Cow position:
               
chr29:26602210-26602403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
64, 73
               

               
Conread position:
               
705-824
               

               
Cow position:
               
chr29:17022164-17022281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
705-896
               

               
Cow position:
               
chr29:32215723-32215906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
712-882
               

               
Cow position:
               
chr29:17282089-17282250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
714-900
               

               
Cow position:
               
chr29:16735247-16735435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
46, 59
               

               
Conread position:
               
716-898
               

               
Cow position:
               
chr29:7040848-7040663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
724-896
               

               
Cow position:
               
chr29:33143321-33143155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
729-897
               

               
Cow position:
               
chr29:2219425-2219593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
154, 69
               

               
Conread position:
               
734-891
               

               
Cow position:
               
chr29:40112425-40112577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
735-900
               

               
Cow position:
               
chr29:22776123-22776282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
738-879
               

               
Cow position:
               
chr29:7143342-7143485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               
Show alignments to all cow chromosomes.