Cow genome map

Conread name: Ss1.1-Spl1-SPL010027A09.5

Conread position: 1-184
Cow position: chr26:25225546-25225729 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 33, 123

Conread position: 1-195
Cow position: chr26:1325930-1325750 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 1-196
Cow position: chr26:16435466-16435664 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 34, 126

Conread position: 1-199
Cow position: chr26:32830267-32830070 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 33, 109

Conread position: 1-204
Cow position: chr26:19459875-19459677 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 57, 30

Conread position: 1-209
Cow position: chr26:29663970-29664182 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 165
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 33, 0

Conread position: 1-210
Cow position: chr26:6714115-6714323 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 33, 121

Conread position: 1-212
Cow position: chr26:32563533-32563325 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 10, 104

Conread position: 1-214
Cow position: chr26:34060519-34060308 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 44, 120

Conread position: 1-216
Cow position: chr26:20260765-20260560 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 109, 61

Conread position: 2-164
Cow position: chr26:28202573-28202735 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 117
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 32, 121

Conread position: 2-200
Cow position: chr26:32815606-32815802 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 83

Conread position: 3-141
Cow position: chr26:16166510-16166648 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 120

Conread position: 3-145
Cow position: chr26:27482381-27482523 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 120

Conread position: 3-153
Cow position: chr26:21822866-21823010 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 3-164
Cow position: chr26:12028053-12028213 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 31, 56

Conread position: 3-170
Cow position: chr26:6823341-6823177 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 42, 8

Conread position: 3-171
Cow position: chr26:27768452-27768284 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 121

Conread position: 3-174
Cow position: chr26:9662047-9662214 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 118

Conread position: 3-175
Cow position: chr26:32353540-32353707 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 122
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 3-179
Cow position: chr26:5407164-5406988 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 31, 121

Conread position: 3-182
Cow position: chr26:16796031-16796200 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 3-185
Cow position: chr26:9501893-9501712 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 143
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 31, 120

Conread position: 3-186
Cow position: chr26:19671659-19671480 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 31, 76

Conread position: 3-192
Cow position: chr26:18381490-18381310 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 44, 0

Conread position: 3-195
Cow position: chr26:3706984-3706785 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 31, 106

Conread position: 3-196
Cow position: chr26:4854725-4854537 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 31, 0

Conread position: 3-198
Cow position: chr26:5168574-5168388 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 139
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 3-200
Cow position: chr26:33074315-33074508 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 31, 55

Conread position: 3-200
Cow position: chr26:33201889-33202082 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 134
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 3-200
Cow position: chr26:34026852-34027047 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 151
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 31, 120

Conread position: 3-201
Cow position: chr26:4807739-4807546 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 31, 120

Conread position: 3-201
Cow position: chr26:10764396-10764199 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 31, 67

Conread position: 3-201
Cow position: chr26:10965404-10965607 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 31, 126

Conread position: 3-201
Cow position: chr26:24240866-24240667 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 31, 120

Conread position: 3-201
Cow position: chr26:29889333-29889524 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 3-201
Cow position: chr26:32601537-32601338 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 51, 43

Conread position: 3-202
Cow position: chr26:10974310-10974117 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 60, 28

Conread position: 3-202
Cow position: chr26:23671600-23671402 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 27, 61

Conread position: 3-203
Cow position: chr26:8811312-8811112 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 31, 73

Conread position: 3-204
Cow position: chr26:11672482-11672281 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 31, 121

Conread position: 3-204
Cow position: chr26:35449240-35449047 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 3-206
Cow position: chr26:6794333-6794127 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 79, 124

Conread position: 3-206
Cow position: chr26:31633913-31633709 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 46, 120

Conread position: 3-208
Cow position: chr26:4585030-4585230 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 117, 0

Conread position: 3-211
Cow position: chr26:586691-586901 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 26, 74

Conread position: 3-211
Cow position: chr26:20291511-20291714 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 141
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 3-211
Cow position: chr26:23623862-23624067 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 31, 54

Conread position: 3-214
Cow position: chr26:9099352-9099558 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 198, 48

Conread position: 3-214
Cow position: chr26:22348829-22349039 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 197, 134

Conread position: 3-215
Cow position: chr26:33475881-33475664 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 31, 0

Conread position: 3-219
Cow position: chr26:33392583-33392366 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 22, 124

Conread position: 3-220
Cow position: chr26:33253135-33253350 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 166
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 192, 43

Conread position: 4-146
Cow position: chr26:26244988-26245128 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 46, 86

Conread position: 4-202
Cow position: chr26:31903350-31903153 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 59

Conread position: 4-211
Cow position: chr26:7642393-7642597 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 143
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 198, 22

Conread position: 4-213
Cow position: chr26:23141922-23142129 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 145
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 49, 23

Conread position: 4-215
Cow position: chr26:25526427-25526221 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 199, 26

Conread position: 4-216
Cow position: chr26:8478694-8478898 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 5-209
Cow position: chr26:13818603-13818400 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 190, 17

Conread position: 8-193
Cow position: chr26:17398756-17398571 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 26, 113

Conread position: 8-202
Cow position: chr26:16550168-16549971 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 190

Conread position: 8-203
Cow position: chr26:32834397-32834592 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 26, 117

Conread position: 8-238
Cow position: chr26:4363480-4363249 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 172
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 26, 61

Conread position: 14-200
Cow position: chr26:19774129-19774311 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 7, 0

Conread position: 23-218
Cow position: chr26:2739292-2739487 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 140, 98

Conread position: 25-206
Cow position: chr26:32836399-32836221 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 30, 0

Conread position: 26-193
Cow position: chr26:9839388-9839548 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 73

Conread position: 28-164
Cow position: chr26:32825843-32825976 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 28-197
Cow position: chr26:9104123-9104290 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 8, 35

Conread position: 28-197
Cow position: chr26:16594344-16594508 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 93, 0

Conread position: 28-215
Cow position: chr26:32776355-32776533 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 29-216
Cow position: chr26:6865182-6864996 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 26, 94

Conread position: 30-200
Cow position: chr26:677824-677992 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 58, 50

Conread position: 30-214
Cow position: chr26:13020989-13021171 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 169, 92

Conread position: 30-214
Cow position: chr26:34580960-34580777 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 93

Conread position: 32-202
Cow position: chr26:28374287-28374457 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 10, 88

Conread position: 33-199
Cow position: chr26:829958-829794 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 87, 0

Conread position: 33-211
Cow position: chr26:11538685-11538510 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 88, 0

Conread position: 42-206
Cow position: chr26:17057823-17057660 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 81, 0

Conread position: 42-211
Cow position: chr26:19636440-19636269 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 42-211
Cow position: chr26:34314834-34314668 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 44-214
Cow position: chr26:2703505-2703673 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 159, 84

Conread position: 45-211
Cow position: chr26:12237890-12238051 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 45-214
Cow position: chr26:33011528-33011693 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 9, 76

Conread position: 46-200
Cow position: chr26:8353109-8352957 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 46-200
Cow position: chr26:8699904-8700059 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 9, 78

Conread position: 46-203
Cow position: chr26:25074858-25074702 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 9, 77

Conread position: 46-212
Cow position: chr26:9604702-9604536 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 157, 74

Conread position: 46-214
Cow position: chr26:16922078-16921913 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 17, 72

Conread position: 46-214
Cow position: chr26:24453769-24453932 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 8, 77

Conread position: 47-187
Cow position: chr26:22304240-22304378 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 67, 60

Conread position: 52-174
Cow position: chr26:7183863-7183983 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 52-211
Cow position: chr26:6475294-6475450 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 10, 56

Conread position: 55-211
Cow position: chr26:29779053-29778899 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 129, 67

Conread position: 57-196
Cow position: chr26:7224212-7224350 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 59-194
Cow position: chr26:18876835-18876968 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 63, 0

Conread position: 60-218
Cow position: chr26:14578446-14578298 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 14

Conread position: 68-215
Cow position: chr26:17186920-17187059 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 53, 0

Show alignments to all cow chromosomes.