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Cow genome map

           
Conread name:
           
Ss1.1-Spl1-SPL010027A09.5
        

               
Conread position:
               
1-166
               

               
Cow position:
               
chr6:26408295-26408460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 105
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr6:33150086-33150272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr6:10176092-10176286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr6:28483224-28483031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
126, 120
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr6:3952728-3952530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 120
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr6:21535247-21535047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
145, 118
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr6:53932638-53932841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
33, 69
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr6:57079633-57079431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
52, 123
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr6:38640441-38640240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr6:61681285-61681084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr6:1103533-1103734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr6:445535-445326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
32, 125
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr6:60740217-60740017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr6:15305778-15305573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 123
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr6:23353763-23353553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
34, 126
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr6:32126259-32126059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr6:62437624-62437410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
33, 122
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr6:37395196-37395405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
95, 30
               

               
Conread position:
               
2-197
               

               
Cow position:
               
chr6:31865301-31865112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 123
               

               
Conread position:
               
2-211
               

               
Cow position:
               
chr6:7189923-7190117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
71, 29
               

               
Conread position:
               
3-146
               

               
Cow position:
               
chr6:43906476-43906619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
31, 118
               

               
Conread position:
               
3-154
               

               
Cow position:
               
chr6:14263684-14263834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 63
               

               
Conread position:
               
3-154
               

               
Cow position:
               
chr6:18440270-18440421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
46, 120
               

               
Conread position:
               
3-155
               

               
Cow position:
               
chr6:58697424-58697576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
28, 121
               

               
Conread position:
               
3-156
               

               
Cow position:
               
chr6:35984929-35985082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 120
               

               
Conread position:
               
3-156
               

               
Cow position:
               
chr6:57467804-57467651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 120
               

               
Conread position:
               
3-156
               

               
Cow position:
               
chr6:61644651-61644802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 121
               

               
Conread position:
               
3-158
               

               
Cow position:
               
chr6:54840295-54840452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
31, 124
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chr6:48449023-48448876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
46, 75
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr6:15974318-15974473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr6:62724763-62724602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
50, 115
               

               
Conread position:
               
3-167
               

               
Cow position:
               
chr6:44543942-44544102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
35, 60
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr6:15058580-15058417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr6:24491239-24491069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
102, 48
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr6:30895785-30895952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
52, 119
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr6:21184018-21184190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 44
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr6:22876723-22876898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
31, 117
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr6:34569621-34569440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
23, 83
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chr6:36225315-36225139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 61
               

               
Conread position:
               
3-188
               

               
Cow position:
               
chr6:15937647-15937832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 121
               

               
Conread position:
               
3-188
               

               
Cow position:
               
chr6:50771155-50771336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
31, 120
               

               
Conread position:
               
3-191
               

               
Cow position:
               
chr6:6060366-6060552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
58, 5
               

               
Conread position:
               
3-191
               

               
Cow position:
               
chr6:62079125-62078943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
3-192
               

               
Cow position:
               
chr6:19045833-19045641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 124
               

               
Conread position:
               
3-195
               

               
Cow position:
               
chr6:14914029-14914219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 14
               

               
Conread position:
               
3-195
               

               
Cow position:
               
chr6:66947618-66947802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chr6:28559745-28559542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chr6:67187886-67187698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
149, 28
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chr6:67574595-67574402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 119
               

               
Conread position:
               
3-197
               

               
Cow position:
               
chr6:65534963-65535157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 121
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr6:9832407-9832219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr6:47305547-47305354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chr6:5095334-5095533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 120
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chr6:13565292-13565100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chr6:19293003-19292810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 59
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chr6:64432138-64431949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
135, 46
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chr6:10039931-10039733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
31, 120
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chr6:17816786-17816985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
31, 119
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chr6:24110489-24110293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 120
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chr6:35181049-35181245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
27, 106
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chr6:35990034-35990225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
138, 33
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr6:10488075-10488260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr6:12091781-12091983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
44, 125
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr6:19446458-19446263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
52, 118
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr6:19996820-19996626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
55, 67
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr6:37692955-37692761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr6:41375975-41375782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr6:50504661-50504466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr6:69153617-69153423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 120
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr6:35842865-35842668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr6:46558259-46558066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr6:48379406-48379605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 121
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr6:51529980-51530181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
31, 120
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr6:55417328-55417520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
108, 28
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr6:42483620-42483423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 72
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr6:54127616-54127805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr6:18447310-18447508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 120
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr6:46173053-46173251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
38, 60
               

               
Conread position:
               
3-206
               

               
Cow position:
               
chr6:6201638-6201429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
31, 127
               

               
Conread position:
               
3-206
               

               
Cow position:
               
chr6:15446988-15447193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
31, 123
               

               
Conread position:
               
3-206
               

               
Cow position:
               
chr6:23401790-23401987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
3-206
               

               
Cow position:
               
chr6:41014769-41014975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
31, 123
               

               
Conread position:
               
3-206
               

               
Cow position:
               
chr6:44867341-44867537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
3-209
               

               
Cow position:
               
chr6:24536321-24536530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 124
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr6:4468971-4468769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
31, 72
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr6:8125534-8125326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
30, 120
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr6:9718712-9718912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
178, 41
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr6:10105775-10105980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
199, 48
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr6:12965062-12964852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
31, 123
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr6:13367487-13367285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
191, 29
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr6:15243044-15242834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
31, 118
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr6:17313943-17313735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 105
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr6:27888552-27888351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
198, 46
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr6:54365124-54365328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 73
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr6:63251716-63251923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
31, 99
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr6:66434159-66433948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 123
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr6:47356031-47355822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
22, 66
               

               
Conread position:
               
3-214
               

               
Cow position:
               
chr6:43134735-43134941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
3-214
               

               
Cow position:
               
chr6:55296887-55297098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
27, 121
               

               
Conread position:
               
3-214
               

               
Cow position:
               
chr6:56986443-56986651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 115
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr6:19696014-19695807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 120
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr6:37149390-37149186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr6:21467060-21467268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
31, 118
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chr6:55548329-55548541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
4-184
               

               
Cow position:
               
chr6:50883474-50883651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
139, 41
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr6:42567700-42567508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 117
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr6:47245986-47245797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
76, 114
               

               
Conread position:
               
4-198
               

               
Cow position:
               
chr6:21475931-21475740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
4-199
               

               
Cow position:
               
chr6:2585145-2584954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
4-202
               

               
Cow position:
               
chr6:16380751-16380553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 118
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr6:48988638-48988437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 121
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr6:67728582-67728375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
49, 120
               

               
Conread position:
               
4-215
               

               
Cow position:
               
chr6:38207281-38207494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
30, 70
               

               
Conread position:
               
5-119
               

               
Cow position:
               
chr6:16016238-16016123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
29, 66
               

               
Conread position:
               
5-192
               

               
Cow position:
               
chr6:7801192-7801373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 117
               

               
Conread position:
               
5-199
               

               
Cow position:
               
chr6:21514403-21514597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
5-199
               

               
Cow position:
               
chr6:44078718-44078530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chr6:21587231-21587420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
5-202
               

               
Cow position:
               
chr6:5330617-5330421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
5-204
               

               
Cow position:
               
chr6:36189903-36189705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 119
               

               
Conread position:
               
5-206
               

               
Cow position:
               
chr6:62670074-62669870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 122
               

               
Conread position:
               
5-211
               

               
Cow position:
               
chr6:35318930-35319135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
192, 115
               

               
Conread position:
               
8-144
               

               
Cow position:
               
chr6:14150177-14150313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 115
               

               
Conread position:
               
8-176
               

               
Cow position:
               
chr6:8468864-8468700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
8-177
               

               
Cow position:
               
chr6:15587392-15587561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 115
               

               
Conread position:
               
8-186
               

               
Cow position:
               
chr6:66259937-66259754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
26, 121
               

               
Conread position:
               
8-199
               

               
Cow position:
               
chr6:2153396-2153587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
26, 116
               

               
Conread position:
               
8-200
               

               
Cow position:
               
chr6:58304616-58304425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
26, 55
               

               
Conread position:
               
8-202
               

               
Cow position:
               
chr6:16287863-16288049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
8-202
               

               
Cow position:
               
chr6:49096250-49096442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
8-203
               

               
Cow position:
               
chr6:17997117-17997311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
25, 113
               

               
Conread position:
               
8-203
               

               
Cow position:
               
chr6:59301583-59301775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
29, 118
               

               
Conread position:
               
8-205
               

               
Cow position:
               
chr6:6067504-6067696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
8-208
               

               
Cow position:
               
chr6:61631405-61631605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
8-209
               

               
Cow position:
               
chr6:8688650-8688845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
8-211
               

               
Cow position:
               
chr6:47783067-47782860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
26, 117
               

               
Conread position:
               
8-211
               

               
Cow position:
               
chr6:57089404-57089198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
139, 113
               

               
Conread position:
               
8-214
               

               
Cow position:
               
chr6:60118342-60118146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
194, 23
               

               
Conread position:
               
8-214
               

               
Cow position:
               
chr6:67282091-67281891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
194, 23
               

               
Conread position:
               
8-219
               

               
Cow position:
               
chr6:67451168-67451377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
25, 113
               

               
Conread position:
               
8-221
               

               
Cow position:
               
chr6:47959009-47958804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
200, 52
               

               
Conread position:
               
10-221
               

               
Cow position:
               
chr6:55502971-55502757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
24, 118
               

               
Conread position:
               
13-162
               

               
Cow position:
               
chr6:58076591-58076442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 110
               

               
Conread position:
               
13-188
               

               
Cow position:
               
chr6:21066688-21066861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
142, 9
               

               
Conread position:
               
13-201
               

               
Cow position:
               
chr6:21590900-21590717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
14-215
               

               
Cow position:
               
chr6:47799487-47799289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
16-211
               

               
Cow position:
               
chr6:23696191-23696001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 37
               

               
Conread position:
               
17-213
               

               
Cow position:
               
chr6:35171798-35171603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
74, 92
               

               
Conread position:
               
21-201
               

               
Cow position:
               
chr6:5302235-5302409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
21-208
               

               
Cow position:
               
chr6:15243441-15243256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
167, 25
               

               
Conread position:
               
26-198
               

               
Cow position:
               
chr6:8731597-8731421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
27, 71
               

               
Conread position:
               
27-164
               

               
Cow position:
               
chr6:62478688-62478823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
28-163
               

               
Cow position:
               
chr6:35654369-35654502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
28-178
               

               
Cow position:
               
chr6:19508005-19508154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 96
               

               
Conread position:
               
28-199
               

               
Cow position:
               
chr6:6343610-6343438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
95, 33
               

               
Conread position:
               
28-200
               

               
Cow position:
               
chr6:60451607-60451438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
28-208
               

               
Cow position:
               
chr6:35993764-35993587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
28-211
               

               
Cow position:
               
chr6:19131611-19131431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
28-214
               

               
Cow position:
               
chr6:20606136-20605958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
28-214
               

               
Cow position:
               
chr6:37783582-37783398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
15, 93
               

               
Conread position:
               
28-214
               

               
Cow position:
               
chr6:63066009-63065822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
60, 34
               

               
Conread position:
               
29-161
               

               
Cow position:
               
chr6:35702166-35702295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
29-174
               

               
Cow position:
               
chr6:29852886-29853028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
29-215
               

               
Cow position:
               
chr6:55535572-55535753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 75
               

               
Conread position:
               
29-217
               

               
Cow position:
               
chr6:21235223-21235037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
116, 90
               

               
Conread position:
               
30-184
               

               
Cow position:
               
chr6:19519552-19519402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
30-187
               

               
Cow position:
               
chr6:5400581-5400736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
32, 88
               

               
Conread position:
               
30-200
               

               
Cow position:
               
chr6:67456897-67456729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
30-201
               

               
Cow position:
               
chr6:37199359-37199517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
30-211
               

               
Cow position:
               
chr6:58227559-58227372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
32-196
               

               
Cow position:
               
chr6:40774155-40774317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
41, 47
               

               
Conread position:
               
32-204
               

               
Cow position:
               
chr6:4691799-4691968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
32-208
               

               
Cow position:
               
chr6:18048843-18049022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
23, 94
               

               
Conread position:
               
33-200
               

               
Cow position:
               
chr6:54864484-54864644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 83
               

               
Conread position:
               
33-201
               

               
Cow position:
               
chr6:3592573-3592412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
143, 88
               

               
Conread position:
               
39-211
               

               
Cow position:
               
chr6:582103-582272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
42-188
               

               
Cow position:
               
chr6:16316483-16316336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
42-198
               

               
Cow position:
               
chr6:67323476-67323322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
42-203
               

               
Cow position:
               
chr6:61142394-61142555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
42-215
               

               
Cow position:
               
chr6:40032357-40032186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
158, 79
               

               
Conread position:
               
42-215
               

               
Cow position:
               
chr6:54867684-54867512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
165, 79
               

               
Conread position:
               
44-214
               

               
Cow position:
               
chr6:47575069-47574903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
46-173
               

               
Cow position:
               
chr6:53513859-53513984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
111, 75
               

               
Conread position:
               
46-177
               

               
Cow position:
               
chr6:16352191-16352320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
46-199
               

               
Cow position:
               
chr6:7568286-7568135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
124, 16
               

               
Conread position:
               
46-204
               

               
Cow position:
               
chr6:60057496-60057649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
154, 28
               

               
Conread position:
               
46-204
               

               
Cow position:
               
chr6:67805852-67806009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
156, 75
               

               
Conread position:
               
46-205
               

               
Cow position:
               
chr6:38771443-38771291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
46-211
               

               
Cow position:
               
chr6:1475509-1475346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
9, 77
               

               
Conread position:
               
46-214
               

               
Cow position:
               
chr6:18144360-18144188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
104, 75
               

               
Conread position:
               
46-215
               

               
Cow position:
               
chr6:35103165-35103335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
155, 76
               

               
Conread position:
               
46-215
               

               
Cow position:
               
chr6:47339193-47339361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
155, 75
               

               
Conread position:
               
47-199
               

               
Cow position:
               
chr6:60667571-60667425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
47-201
               

               
Cow position:
               
chr6:8787875-8788027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
47-217
               

               
Cow position:
               
chr6:39093911-39093743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
118, 26
               

               
Conread position:
               
48-191
               

               
Cow position:
               
chr6:67214910-67214769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
49-200
               

               
Cow position:
               
chr6:17794604-17794753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
49-210
               

               
Cow position:
               
chr6:35436155-35435995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
13, 74
               

               
Conread position:
               
50-206
               

               
Cow position:
               
chr6:19681366-19681520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
51-202
               

               
Cow position:
               
chr6:54573418-54573268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
11, 73
               

               
Conread position:
               
52-207
               

               
Cow position:
               
chr6:20196146-20196296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
148, 70
               

               
Conread position:
               
53-206
               

               
Cow position:
               
chr6:42565843-42565692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
140, 24
               

               
Conread position:
               
56-203
               

               
Cow position:
               
chr6:9008459-9008604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
57-211
               

               
Cow position:
               
chr6:41655890-41656042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
59-201
               

               
Cow position:
               
chr6:37463172-37463032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
63-211
               

               
Cow position:
               
chr6:17548828-17548974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
65-215
               

               
Cow position:
               
chr6:17527445-17527592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
68-214
               

               
Cow position:
               
chr6:48469141-48468996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
137, 54
               
Show alignments to all cow chromosomes.