Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Spl1-SPL010035E01.5
        

               Conread position:
               151-900
               

               Cow position:
               chr6:22628657-22627908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               750
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               452-900
               

               Cow position:
               chr6:10681964-10682413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               97
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               430, 0
               

               Conread position:
               604-874
               

               Cow position:
               chr6:50527037-50527297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               200
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               209, 16
               

               Conread position:
               610-874
               

               Cow position:
               chr6:9368704-9368426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               70, 27
               

               Conread position:
               611-871
               

               Cow position:
               chr6:6166785-6167038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               187
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               10, 32
               

               Conread position:
               611-900
               

               Cow position:
               chr6:39331003-39330712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 9
               

               Conread position:
               612-831
               

               Cow position:
               chr6:14758994-14758779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               169, 8
               

               Conread position:
               612-874
               

               Cow position:
               chr6:15991411-15991156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               9, 31
               

               Conread position:
               613-842
               

               Cow position:
               chr6:9036359-9036128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               27, 197
               

               Conread position:
               620-808
               

               Cow position:
               chr6:28977959-28977770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               157
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 21
               

               Conread position:
               620-856
               

               Cow position:
               chr6:37643957-37644192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               173
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               231, 0
               

               Conread position:
               620-900
               

               Cow position:
               chr6:1637419-1637137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               620-900
               

               Cow position:
               chr6:36531813-36532095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               620-900
               

               Cow position:
               chr6:66234877-66235158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 203
               

               Conread position:
               625-900
               

               Cow position:
               chr6:2012425-2012692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               626-856
               

               Cow position:
               chr6:24109091-24109321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               626-873
               

               Cow position:
               chr6:16276275-16276524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               134, 11
               

               Conread position:
               628-843
               

               Cow position:
               chr6:14707338-14707126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               152
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               41, 9
               

               Conread position:
               628-854
               

               Cow position:
               chr6:27342131-27342355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               8, 79
               

               Conread position:
               628-874
               

               Cow position:
               chr6:7175721-7175479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               115, 9
               

               Conread position:
               628-875
               

               Cow position:
               chr6:36852030-36852277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               90, 7
               

               Conread position:
               628-885
               

               Cow position:
               chr6:50801018-50800762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               628-891
               

               Cow position:
               chr6:26654668-26654923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               206, 7
               

               Conread position:
               628-892
               

               Cow position:
               chr6:56635911-56635654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               628-899
               

               Cow position:
               chr6:32420489-32420758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               628-900
               

               Cow position:
               chr6:3271937-3271661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               629-898
               

               Cow position:
               chr6:53811115-53811386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 78
               

               Conread position:
               630-897
               

               Cow position:
               chr6:6342835-6343089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               246, 5
               

               Conread position:
               633-872
               

               Cow position:
               chr6:59834631-59834870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               633-874
               

               Cow position:
               chr6:39848463-39848700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               187, 75
               

               Conread position:
               633-874
               

               Cow position:
               chr6:54357979-54357736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               181
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               21, 125
               

               Conread position:
               633-876
               

               Cow position:
               chr6:51393209-51393449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               633-900
               

               Cow position:
               chr6:2875483-2875216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               634-758
               

               Cow position:
               chr6:16702413-16702291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               105
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               634-766
               

               Cow position:
               chr6:38403770-38403638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               47, 7
               

               Conread position:
               634-823
               

               Cow position:
               chr6:6278334-6278523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               634-829
               

               Cow position:
               chr6:24545159-24545363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               157
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               634-837
               

               Cow position:
               chr6:9844238-9844439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               37, 63
               

               Conread position:
               634-847
               

               Cow position:
               chr6:47154942-47155145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               634-872
               

               Cow position:
               chr6:16418137-16417899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               634-874
               

               Cow position:
               chr6:19684413-19684173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               634-886
               

               Cow position:
               chr6:28080531-28080288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               189
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               634-893
               

               Cow position:
               chr6:57303144-57303398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               634-894
               

               Cow position:
               chr6:16298058-16298313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               634-896
               

               Cow position:
               chr6:40139741-40139480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 0
               

               Conread position:
               634-898
               

               Cow position:
               chr6:6613841-6614103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 140
               

               Conread position:
               634-898
               

               Cow position:
               chr6:50637810-50638074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 50
               

               Conread position:
               634-900
               

               Cow position:
               chr6:6768691-6768947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               197
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               181, 0
               

               Conread position:
               634-900
               

               Cow position:
               chr6:10266579-10266315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 132
               

               Conread position:
               634-900
               

               Cow position:
               chr6:16049741-16049476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               634-900
               

               Cow position:
               chr6:25774070-25773807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 0
               

               Conread position:
               634-900
               

               Cow position:
               chr6:28112284-28112018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               634-900
               

               Cow position:
               chr6:33451377-33451641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               634-900
               

               Cow position:
               chr6:47171598-47171863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               197
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               84, 209
               

               Conread position:
               634-900
               

               Cow position:
               chr6:49442520-49442776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               634-900
               

               Cow position:
               chr6:55170023-55170283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 196
               

               Conread position:
               635-871
               

               Cow position:
               chr6:29077135-29077367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               636-800
               

               Cow position:
               chr6:42988241-42988082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               636-826
               

               Cow position:
               chr6:56849069-56849254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               146
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               162, 0
               

               Conread position:
               636-885
               

               Cow position:
               chr6:24623589-24623341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               636-900
               

               Cow position:
               chr6:46283548-46283292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 5
               

               Conread position:
               637-809
               

               Cow position:
               chr6:38995168-38994995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               66, 141
               

               Conread position:
               637-843
               

               Cow position:
               chr6:1294083-1293883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               637-856
               

               Cow position:
               chr6:41466735-41466513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               637-871
               

               Cow position:
               chr6:1096178-1095940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               54, 21
               

               Conread position:
               637-874
               

               Cow position:
               chr6:8432447-8432683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 168
               

               Conread position:
               637-874
               

               Cow position:
               chr6:65935097-65934867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               66, 29
               

               Conread position:
               637-885
               

               Cow position:
               chr6:28164081-28164328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               174, 94
               

               Conread position:
               637-891
               

               Cow position:
               chr6:4022080-4022338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               25, 73
               

               Conread position:
               637-900
               

               Cow position:
               chr6:35873178-35872915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               637-900
               

               Cow position:
               chr6:46633668-46633933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 74
               

               Conread position:
               638-823
               

               Cow position:
               chr6:35825600-35825780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               638-885
               

               Cow position:
               chr6:33359213-33359449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               185, 9
               

               Conread position:
               638-886
               

               Cow position:
               chr6:17326869-17326628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               638-900
               

               Cow position:
               chr6:23568050-23567788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-747
               

               Cow position:
               chr6:14696984-14696876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               89
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-751
               

               Cow position:
               chr6:50571750-50571862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               95
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-761
               

               Cow position:
               chr6:51150501-51150623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               103
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-765
               

               Cow position:
               chr6:6100592-6100466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               102
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-768
               

               Cow position:
               chr6:17334318-17334447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-769
               

               Cow position:
               chr6:1771084-1770954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               104
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-773
               

               Cow position:
               chr6:25436207-25436073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               114
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-774
               

               Cow position:
               chr6:28979984-28979850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               639-774
               

               Cow position:
               chr6:55361016-55360881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-774
               

               Cow position:
               chr6:55361236-55361101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-778
               

               Cow position:
               chr6:33808875-33808736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-782
               

               Cow position:
               chr6:54978970-54978827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-784
               

               Cow position:
               chr6:54429246-54429388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               120
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               64, 50
               

               Conread position:
               639-788
               

               Cow position:
               chr6:32125502-32125656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               117
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               639-795
               

               Cow position:
               chr6:42897749-42897905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               126
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-796
               

               Cow position:
               chr6:8535240-8535083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-798
               

               Cow position:
               chr6:39912881-39913040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               134
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-799
               

               Cow position:
               chr6:1537521-1537683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               639-799
               

               Cow position:
               chr6:34843132-34842965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               639-801
               

               Cow position:
               chr6:68322687-68322532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               123
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               639-807
               

               Cow position:
               chr6:64304787-64304618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               639-808
               

               Cow position:
               chr6:6944418-6944250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               639-808
               

               Cow position:
               chr6:16191180-16191348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               639-809
               

               Cow position:
               chr6:46225406-46225236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               139
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-810
               

               Cow position:
               chr6:57552000-57551827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               136
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               639-813
               

               Cow position:
               chr6:58031326-58031498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               38, 117
               

               Conread position:
               639-816
               

               Cow position:
               chr6:7112155-7111979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               639-817
               

               Cow position:
               chr6:2110853-2110678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               149
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               639-817
               

               Cow position:
               chr6:39996034-39995854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               54, 45
               

               Conread position:
               639-817
               

               Cow position:
               chr6:40284405-40284225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               639-817
               

               Cow position:
               chr6:43346030-43345852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               68, 111
               

               Conread position:
               639-822
               

               Cow position:
               chr6:48579164-48578981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-822
               

               Cow position:
               chr6:57119874-57120056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               639-823
               

               Cow position:
               chr6:1245362-1245178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-823
               

               Cow position:
               chr6:47630739-47630923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               162, 26
               

               Conread position:
               639-824
               

               Cow position:
               chr6:31880230-31880045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-827
               

               Cow position:
               chr6:7755392-7755204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-827
               

               Cow position:
               chr6:24652731-24652912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               59, 52
               

               Conread position:
               639-833
               

               Cow position:
               chr6:30896363-30896553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               15, 97
               

               Conread position:
               639-834
               

               Cow position:
               chr6:4274604-4274794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               639-836
               

               Cow position:
               chr6:126576-126379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               162
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-836
               

               Cow position:
               chr6:35884366-35884562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               78, 161
               

               Conread position:
               639-837
               

               Cow position:
               chr6:34548582-34548779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               116, 24
               

               Conread position:
               639-837
               

               Cow position:
               chr6:37388125-37388323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               161
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-839
               

               Cow position:
               chr6:16620174-16620375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               147, 134
               

               Conread position:
               639-840
               

               Cow position:
               chr6:41437428-41437629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               160
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-840
               

               Cow position:
               chr6:43585666-43585858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               639-841
               

               Cow position:
               chr6:15923800-15923591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               639-842
               

               Cow position:
               chr6:44494765-44494968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               104, 175
               

               Conread position:
               639-842
               

               Cow position:
               chr6:61632184-61631989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               639-843
               

               Cow position:
               chr6:7995488-7995285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               159
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               639-843
               

               Cow position:
               chr6:13591871-13592076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               65, 151
               

               Conread position:
               639-844
               

               Cow position:
               chr6:11721657-11721452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               159
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-844
               

               Cow position:
               chr6:24988599-24988805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               162
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               639-844
               

               Cow position:
               chr6:41410160-41410365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               162
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-844
               

               Cow position:
               chr6:46763847-46763643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               158
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               180, 0
               

               Conread position:
               639-846
               

               Cow position:
               chr6:6119446-6119238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               162
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               639-847
               

               Cow position:
               chr6:40861796-40861592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               162
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               639-847
               

               Cow position:
               chr6:58950930-58950719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               148, 34
               

               Conread position:
               639-849
               

               Cow position:
               chr6:14199602-14199811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               167
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 62
               

               Conread position:
               639-849
               

               Cow position:
               chr6:33301227-33301437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               167
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 148
               

               Conread position:
               639-849
               

               Cow position:
               chr6:62333191-62332982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               170
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               189, 113
               

               Conread position:
               639-850
               

               Cow position:
               chr6:18874733-18874944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               165
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-850
               

               Cow position:
               chr6:50503138-50503342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               639-852
               

               Cow position:
               chr6:5946216-5946003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               167
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-853
               

               Cow position:
               chr6:39137050-39137264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               171
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-854
               

               Cow position:
               chr6:889114-889329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-854
               

               Cow position:
               chr6:65891519-65891310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               639-855
               

               Cow position:
               chr6:40319819-40320035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               164
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               79, 102
               

               Conread position:
               639-855
               

               Cow position:
               chr6:63177602-63177818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               138
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-855
               

               Cow position:
               chr6:68031005-68031221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               171
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-856
               

               Cow position:
               chr6:30470809-30470602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               639-856
               

               Cow position:
               chr6:54321150-54320935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               21, 91
               

               Conread position:
               639-856
               

               Cow position:
               chr6:64314623-64314407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               165
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               639-858
               

               Cow position:
               chr6:55903648-55903867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-859
               

               Cow position:
               chr6:45479529-45479309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-863
               

               Cow position:
               chr6:42617038-42617263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               133, 52
               

               Conread position:
               639-864
               

               Cow position:
               chr6:29503445-29503670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               172, 178
               

               Conread position:
               639-865
               

               Cow position:
               chr6:52248974-52248750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               639-866
               

               Cow position:
               chr6:40496985-40497207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               639-867
               

               Cow position:
               chr6:4681167-4681387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               207, 72
               

               Conread position:
               639-867
               

               Cow position:
               chr6:9839570-9839343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 0
               

               Conread position:
               639-867
               

               Cow position:
               chr6:19115336-19115563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               182, 42
               

               Conread position:
               639-867
               

               Cow position:
               chr6:40137846-40137618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-868
               

               Cow position:
               chr6:12406785-12407000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               189, 70
               

               Conread position:
               639-868
               

               Cow position:
               chr6:22804962-22804734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               639-868
               

               Cow position:
               chr6:35103981-35103756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               173
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               639-870
               

               Cow position:
               chr6:36258513-36258744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-870
               

               Cow position:
               chr6:57329837-57330068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-871
               

               Cow position:
               chr6:10536420-10536188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-871
               

               Cow position:
               chr6:12680577-12680810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               186, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:444369-444136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:2867901-2867668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:6557430-6557663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:8207785-8208018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:10013356-10013589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:12971955-12972188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:12997975-12998208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:14389167-14388934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:15783430-15783202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               176
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               205, 129
               

               Conread position:
               639-872
               

               Cow position:
               chr6:18912176-18911942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:19706988-19707221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:19712686-19712453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:20581220-20580987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:21163862-21164095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:25363110-25363343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:25375817-25376050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:27541120-27541353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:28101126-28100892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               200, 75
               

               Conread position:
               639-872
               

               Cow position:
               chr6:28294266-28294033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:28401204-28401435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:28675087-28675320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:30076712-30076482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               173
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:30704934-30705167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:30708638-30708405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:37217198-37217431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:37488097-37487874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               63, 157
               

               Conread position:
               639-872
               

               Cow position:
               chr6:38917481-38917247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:39080476-39080709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:39897504-39897271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:40278610-40278844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:41158762-41158529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:41495279-41495046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:41823278-41823045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:41834860-41835092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:45747449-45747215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:45937838-45938071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:45976058-45976291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:46607948-46607717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:51869496-51869729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:52481904-52482137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:53537635-53537868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:54900648-54900881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:54925258-54925027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               163
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               33, 76
               

               Conread position:
               639-872
               

               Cow position:
               chr6:55239249-55239482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:55289609-55289378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:55387010-55387239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:56557053-56556820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:56887971-56888204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:59051977-59052210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:62788568-62788793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               639-872
               

               Cow position:
               chr6:63714717-63714497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               639-873
               

               Cow position:
               chr6:1077696-1077468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               166, 62
               

               Conread position:
               639-873
               

               Cow position:
               chr6:48343404-48343635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 44
               

               Conread position:
               639-874
               

               Cow position:
               chr6:875935-875707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               177
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               155, 0
               

               Conread position:
               639-874
               

               Cow position:
               chr6:1104602-1104376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               182
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               170, 0
               

               Conread position:
               639-874
               

               Cow position:
               chr6:1263718-1263952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 0
               

               Conread position:
               639-874
               

               Cow position:
               chr6:1914052-1914274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               213, 14
               

               Conread position:
               639-874
               

               Cow position:
               chr6:3928693-3928916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               81, 121
               

               Conread position:
               639-874
               

               Cow position:
               chr6:5501384-5501152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               177
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               78, 26
               

               Conread position:
               639-874
               

               Cow position:
               chr6:6569243-6569478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-874
               

               Cow position:
               chr6:8145466-8145238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               639-874
               

               Cow position:
               chr6:12307108-12307328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               639-874
               

               Cow position:
               chr6:12387916-12387681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-874
               

               Cow position:
               chr6:12518638-12518872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               182
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               99, 90
               

               Conread position:
               639-874
               

               Cow position:
               chr6:12927127-12927360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 0
               

               Conread position:
               639-874
               

               Cow position:
               chr6:19328430-19328197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               34, 71
               

               Conread position:
               639-874
               

               Cow position:
               chr6:24125847-24125628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               181
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               142, 0
               

               Conread position:
               639-874
               

               Cow position:
               chr6:29085802-29086036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               168
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               34, 171
               

               Conread position:
               639-874
               

               Cow position:
               chr6:33466516-33466748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               639-874
               

               Cow position:
               chr6:33949605-33949372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               175
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               639-874
               

               Cow position:
               chr6:35614001-35613765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 23
               

               Conread position:
               639-874
               

               Cow position:
               chr6:40300452-40300223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               639-874
               

               Cow position:
               chr6:41816089-41815867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               639-874
               

               Cow position:
               chr6:53380680-53380910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               49, 21
               

               Conread position:
               639-874
               

               Cow position:
               chr6:55944883-55944650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               124, 60
               

               Conread position:
               639-878
               

               Cow position:
               chr6:40157977-40157738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 66
               

               Conread position:
               639-878
               

               Cow position:
               chr6:61055826-61055590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               120, 20
               

               Conread position:
               639-880
               

               Cow position:
               chr6:36830591-36830832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-883
               

               Cow position:
               chr6:529296-529053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 168
               

               Conread position:
               639-883
               

               Cow position:
               chr6:17344758-17344998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 52
               

               Conread position:
               639-884
               

               Cow position:
               chr6:828272-828030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               639-884
               

               Cow position:
               chr6:38595089-38594842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               208, 131
               

               Conread position:
               639-885
               

               Cow position:
               chr6:223940-223694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-885
               

               Cow position:
               chr6:1509979-1510226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               85, 50
               

               Conread position:
               639-885
               

               Cow position:
               chr6:6163664-6163900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               639-885
               

               Cow position:
               chr6:31688977-31688731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-885
               

               Cow position:
               chr6:38988265-38988020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 84
               

               Conread position:
               639-885
               

               Cow position:
               chr6:45279745-45279499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               188, 46
               

               Conread position:
               639-885
               

               Cow position:
               chr6:50625023-50625261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               110, 75
               

               Conread position:
               639-885
               

               Cow position:
               chr6:51191186-51191437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               174, 139
               

               Conread position:
               639-885
               

               Cow position:
               chr6:55456519-55456273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               20, 134
               

               Conread position:
               639-885
               

               Cow position:
               chr6:58073449-58073691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               180
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               639-885
               

               Cow position:
               chr6:60931493-60931248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               146, 10
               

               Conread position:
               639-885
               

               Cow position:
               chr6:63197760-63197519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               135, 61
               

               Conread position:
               639-885
               

               Cow position:
               chr6:65016482-65016234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 57
               

               Conread position:
               639-886
               

               Cow position:
               chr6:3375187-3374941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               181
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               69, 208
               

               Conread position:
               639-886
               

               Cow position:
               chr6:3545052-3545299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               47, 21
               

               Conread position:
               639-886
               

               Cow position:
               chr6:11466508-11466266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               184
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               639-886
               

               Cow position:
               chr6:15962384-15962142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               26, 71
               

               Conread position:
               639-886
               

               Cow position:
               chr6:27365725-27365973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               639-886
               

               Cow position:
               chr6:30893112-30892865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-886
               

               Cow position:
               chr6:57473805-57474052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               200, 69
               

               Conread position:
               639-886
               

               Cow position:
               chr6:61066487-61066737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               639-887
               

               Cow position:
               chr6:21584352-21584109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               639-889
               

               Cow position:
               chr6:8562136-8562375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               639-891
               

               Cow position:
               chr6:1274296-1274047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 44
               

               Conread position:
               639-891
               

               Cow position:
               chr6:2366725-2366484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               639-891
               

               Cow position:
               chr6:13405894-13406144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               187
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               187, 59
               

               Conread position:
               639-891
               

               Cow position:
               chr6:16625349-16625603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               186
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               639-891
               

               Cow position:
               chr6:22017618-22017370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               639-891
               

               Cow position:
               chr6:25783715-25783968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               185
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               140, 113
               

               Conread position:
               639-891
               

               Cow position:
               chr6:26636200-26636449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               122, 48
               

               Conread position:
               639-891
               

               Cow position:
               chr6:27870169-27870416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               32, 111
               

               Conread position:
               639-891
               

               Cow position:
               chr6:33984355-33984606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               158, 75
               

               Conread position:
               639-891
               

               Cow position:
               chr6:35434997-35435258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               200
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               166, 83
               

               Conread position:
               639-891
               

               Cow position:
               chr6:48807576-48807333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               119, 99
               

               Conread position:
               639-891
               

               Cow position:
               chr6:52401201-52401451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 0
               

               Conread position:
               639-891
               

               Cow position:
               chr6:55141275-55141024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               182, 0
               

               Conread position:
               639-892
               

               Cow position:
               chr6:10044765-10045018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-892
               

               Cow position:
               chr6:20747075-20747319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               228, 23
               

               Conread position:
               639-892
               

               Cow position:
               chr6:47381229-47381480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               231, 0
               

               Conread position:
               639-892
               

               Cow position:
               chr6:57680980-57680725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               65, 150
               

               Conread position:
               639-893
               

               Cow position:
               chr6:11169135-11169371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               639-893
               

               Cow position:
               chr6:50446494-50446243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               639-894
               

               Cow position:
               chr6:9751639-9751387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               194
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               127, 79
               

               Conread position:
               639-896
               

               Cow position:
               chr6:1834554-1834810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               639-896
               

               Cow position:
               chr6:11389055-11388798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-896
               

               Cow position:
               chr6:24075141-24074891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               639-896
               

               Cow position:
               chr6:29298776-29299032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               639-896
               

               Cow position:
               chr6:43621578-43621835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-897
               

               Cow position:
               chr6:4903237-4902980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               188
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               180, 112
               

               Conread position:
               639-897
               

               Cow position:
               chr6:11193021-11192783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               198
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               639-897
               

               Cow position:
               chr6:15181686-15181941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               71, 66
               

               Conread position:
               639-897
               

               Cow position:
               chr6:15986989-15987246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 0
               

               Conread position:
               639-897
               

               Cow position:
               chr6:21712265-21712523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-897
               

               Cow position:
               chr6:28136297-28136555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-897
               

               Cow position:
               chr6:42131417-42131160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               639-898
               

               Cow position:
               chr6:47998-47737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 123
               

               Conread position:
               639-898
               

               Cow position:
               chr6:4389271-4389529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 0
               

               Conread position:
               639-898
               

               Cow position:
               chr6:4468174-4468428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               639-898
               

               Cow position:
               chr6:6200888-6201146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 0
               

               Conread position:
               639-898
               

               Cow position:
               chr6:7191066-7190803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               639-898
               

               Cow position:
               chr6:13741107-13741366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-898
               

               Cow position:
               chr6:15182298-15182556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               639-898
               

               Cow position:
               chr6:19044748-19045007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 193
               

               Conread position:
               639-898
               

               Cow position:
               chr6:22332936-22332678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               639-898
               

               Cow position:
               chr6:32211213-32210958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               639-898
               

               Cow position:
               chr6:34075429-34075695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               639-898
               

               Cow position:
               chr6:39093175-39093430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 73
               

               Conread position:
               639-898
               

               Cow position:
               chr6:42420677-42420935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               188
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               251, 0
               

               Conread position:
               639-898
               

               Cow position:
               chr6:46666516-46666775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-898
               

               Cow position:
               chr6:47317306-47317562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               210, 75
               

               Conread position:
               639-898
               

               Cow position:
               chr6:47539934-47540193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 47
               

               Conread position:
               639-898
               

               Cow position:
               chr6:53461612-53461355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 0
               

               Conread position:
               639-898
               

               Cow position:
               chr6:54293544-54293803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-898
               

               Cow position:
               chr6:60441554-60441813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-898
               

               Cow position:
               chr6:65862096-65862354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 72
               

               Conread position:
               639-899
               

               Cow position:
               chr6:181992-181723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               639-899
               

               Cow position:
               chr6:208562-208821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               194
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               229, 113
               

               Conread position:
               639-899
               

               Cow position:
               chr6:4865124-4864869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               116, 36
               

               Conread position:
               639-899
               

               Cow position:
               chr6:6160141-6160395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               194
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               241, 66
               

               Conread position:
               639-899
               

               Cow position:
               chr6:9737705-9737445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-899
               

               Cow position:
               chr6:24631696-24631433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               639-899
               

               Cow position:
               chr6:28415289-28415029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               195, 9
               

               Conread position:
               639-899
               

               Cow position:
               chr6:32427682-32427921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               219, 66
               

               Conread position:
               639-899
               

               Cow position:
               chr6:39109812-39109557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               182, 66
               

               Conread position:
               639-899
               

               Cow position:
               chr6:40358319-40358058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 0
               

               Conread position:
               639-899
               

               Cow position:
               chr6:40813920-40814180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-899
               

               Cow position:
               chr6:41192906-41193166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-899
               

               Cow position:
               chr6:65866871-65866608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:76882-76622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:327804-327543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:366625-366886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:451705-451444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:479105-479366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:706557-706814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:1406593-1406333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:1797184-1797445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:1817455-1817195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:2074056-2074318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:2196243-2196504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:2390118-2389857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:2582173-2582436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               196
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               178, 65
               

               Conread position:
               639-900
               

               Cow position:
               chr6:2607016-2607284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:3095558-3095286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:3152771-3153032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:3445255-3444997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:3484861-3484586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:3885946-3885687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 26
               

               Conread position:
               639-900
               

               Cow position:
               chr6:6459669-6459929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:6471360-6471100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:6568675-6568414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:7137783-7137522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:7175101-7174829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               199
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               39, 220
               

               Conread position:
               639-900
               

               Cow position:
               chr6:7449054-7449315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:7467092-7466831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:7801951-7801693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:8205746-8206007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:8284215-8283957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:8753896-8753638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:9235071-9235332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:10332699-10332438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:11020217-11020478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:11288906-11288648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:11401879-11402140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:11442411-11442152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 197
               

               Conread position:
               639-900
               

               Cow position:
               chr6:11453308-11453047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:11638325-11638070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:11869376-11869117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:13307839-13307581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:13494534-13494273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:14929006-14929264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 59
               

               Conread position:
               639-900
               

               Cow position:
               chr6:15137614-15137357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:15275681-15275421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:16593507-16593764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:16765982-16765722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:17049936-17050190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:17111607-17111346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:17121948-17122209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:17556801-17557045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:17632211-17631950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:18803500-18803239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:19059833-19060093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:19103349-19103087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:19719126-19719390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 111
               

               Conread position:
               639-900
               

               Cow position:
               chr6:20215837-20215576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:20515134-20515395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:20552685-20552433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               196
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               37, 106
               

               Conread position:
               639-900
               

               Cow position:
               chr6:21312347-21312085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 200
               

               Conread position:
               639-900
               

               Cow position:
               chr6:21590136-21590401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:21832103-21831840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:22043451-22043190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:22225435-22225179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 27
               

               Conread position:
               639-900
               

               Cow position:
               chr6:22737147-22736886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:23879500-23879239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:24242845-24243106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 108
               

               Conread position:
               639-900
               

               Cow position:
               chr6:25358488-25358747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 9
               

               Conread position:
               639-900
               

               Cow position:
               chr6:25374549-25374288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:26324641-26324381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:26667466-26667204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:26771563-26771302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:26830086-26830347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:26914514-26914768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:27094028-27093767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:27173400-27173661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:27526446-27526185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:28000837-28000577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:28065549-28065807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:28160968-28161226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:28343061-28343321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:28482224-28482486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 199
               

               Conread position:
               639-900
               

               Cow position:
               chr6:28487102-28486841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:28701006-28700745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:29484533-29484782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:31519997-31520258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:31549019-31548759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:32664989-32665250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:33884525-33884263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:33921842-33921583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:34017165-34016903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:34030816-34031056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:34476197-34475938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               191, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:34494231-34494488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:34503965-34503705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:35181835-35181576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 147
               

               Conread position:
               639-900
               

               Cow position:
               chr6:36901569-36901830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:38872969-38872708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:39358924-39358665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 201
               

               Conread position:
               639-900
               

               Cow position:
               chr6:40251241-40250984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:40550147-40549881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:40760584-40760861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               208
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               69, 95
               

               Conread position:
               639-900
               

               Cow position:
               chr6:40975724-40975983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:41876641-41876381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:43039471-43039732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:43049571-43049831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:43087056-43086795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 216
               

               Conread position:
               639-900
               

               Cow position:
               chr6:43789809-43789550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 166
               

               Conread position:
               639-900
               

               Cow position:
               chr6:43921195-43921456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:44017269-44017003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 206
               

               Conread position:
               639-900
               

               Cow position:
               chr6:44131294-44131033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:44146392-44146131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:44598492-44598231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:45160975-45160715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:45666378-45666120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:45723566-45723304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:45901434-45901173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:46162104-46161854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               65, 186
               

               Conread position:
               639-900
               

               Cow position:
               chr6:46570537-46570796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:46584691-46584954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:46948374-46948632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:47039652-47039391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:47977490-47977750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:47988486-47988731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:49444674-49444938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 134
               

               Conread position:
               639-900
               

               Cow position:
               chr6:49794516-49794778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:50120374-50120116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:50983591-50983853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:51718115-51718375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:51877314-51877575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 96
               

               Conread position:
               639-900
               

               Cow position:
               chr6:52001787-52002040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:52557064-52556801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 103
               

               Conread position:
               639-900
               

               Cow position:
               chr6:53271213-53271474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:53345207-53345466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:53542924-53542649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               118, 66
               

               Conread position:
               639-900
               

               Cow position:
               chr6:53739853-53740111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:54218080-54218342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 66
               

               Conread position:
               639-900
               

               Cow position:
               chr6:54865784-54865525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:54887056-54886795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:55040808-55040547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:55538715-55538453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 66
               

               Conread position:
               639-900
               

               Cow position:
               chr6:56441521-56441260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:57308783-57309041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:57521734-57521995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:58390463-58390204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:59296198-59296454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:60379722-60379983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:60876854-60877115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:61051564-61051303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:61549168-61548907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:62665334-62665596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               239, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:62921816-62921572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:63040774-63040515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 81
               

               Conread position:
               639-900
               

               Cow position:
               chr6:63094216-63094477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:63252498-63252229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 161
               

               Conread position:
               639-900
               

               Cow position:
               chr6:65818673-65818411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:65844614-65844876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:65898603-65898351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:65909884-65910145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:65921196-65920939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:65930780-65931041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 69
               

               Conread position:
               639-900
               

               Cow position:
               chr6:67214154-67214412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:67553791-67554050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 0
               

               Conread position:
               639-900
               

               Cow position:
               chr6:67950340-67950599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 0
               

               Conread position:
               640-781
               

               Cow position:
               chr6:12352399-12352539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               106
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               68, 113
               

               Conread position:
               640-793
               

               Cow position:
               chr6:14897742-14897893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               640-813
               

               Cow position:
               chr6:56926602-56926775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               141
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               640-834
               

               Cow position:
               chr6:43797338-43797145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               65, 0
               
UCSC Genome Browser
               Conread position:
               640-842
               

               Cow position:
               chr6:24759249-24759047 (view  custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               160
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               31, 66
               
UCSC Genome Browser
               
               
               
Conread position: 640-843

               
               
               
Cow position: chr6:10253334-10253535 (view  custom track)

               
               
               
Alignm length: 205

               
               
               
Alignm identity: 151

               
               
               
Alignm E-value: 8e-34

               
               
               
Alignm gaps (pig, cow): 130, 22
UCSC Genome Browser
               
               
               
Conread position: 640-843

               
               
               
Cow position: chr6:65874757-65874554 (view  custom track)

               
               
               
Alignm length: 208

               
               
               
Alignm identity: 162

               
               
               
Alignm E-value: 5e-40

               
               
               
Alignm gaps (pig, cow): 116, 74

               
               
               Conread position:640-844
               
               
               Cow position:chr6:14851198-14850997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:640-872
               
               
               Cow position:chr6:38061172-38061404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:640-874
               
               
               Cow position:chr6:28476578-28476811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):118, 65

               
               
               Conread position:640-883
               
               
               Cow position:chr6:46292919-46292672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:640-898
               
               
               Cow position:chr6:10598545-10598797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:640-898
               
               
               Cow position:chr6:56501723-56501980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:640-899
               
               
               Cow position:chr6:20328914-20329176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 21

               
               
               Conread position:640-900
               
               
               Cow position:chr6:539695-539956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:640-900
               
               
               Cow position:chr6:1887238-1886977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 13

               
               
               Conread position:640-900
               
               
               Cow position:chr6:6182167-6181906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 0

               
               
               Conread position:640-900
               
               
               Cow position:chr6:8210171-8209915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 0

               
               
               Conread position:640-900
               
               
               Cow position:chr6:9733423-9733161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 18

               
               
               Conread position:640-900
               
               
               Cow position:chr6:42565098-42565356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 102

               
               
               Conread position:640-900
               
               
               Cow position:chr6:46391105-46391366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 0

               
               
               Conread position:641-809
               
               
               Cow position:chr6:54472091-54471920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:641-817
               
               
               Cow position:chr6:57283719-57283544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:641-837
               
               
               Cow position:chr6:58036844-58037037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:641-841
               
               
               Cow position:chr6:14690077-14690277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:641-848
               
               
               Cow position:chr6:65847812-65847604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 177

               
               
               Conread position:641-849
               
               
               Cow position:chr6:59596815-59597024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:641-862
               
               
               Cow position:chr6:47383146-47383367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:641-871
               
               
               Cow position:chr6:17932494-17932718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):178, 68

               
               
               Conread position:641-872
               
               
               Cow position:chr6:28184760-28184529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:641-874
               
               
               Cow position:chr6:28156713-28156479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:641-874
               
               
               Cow position:chr6:29430392-29430623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:641-874
               
               
               Cow position:chr6:51733642-51733875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:641-885
               
               
               Cow position:chr6:6340567-6340809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):67, 6

               
               
               Conread position:641-886
               
               
               Cow position:chr6:10176941-10176697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:641-896
               
               
               Cow position:chr6:44098243-44098498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):91, 169

               
               
               Conread position:641-897
               
               
               Cow position:chr6:3118828-3118572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 111

               
               
               Conread position:641-898
               
               
               Cow position:chr6:48567931-48567677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:641-899
               
               
               Cow position:chr6:9322556-9322809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):170, 22

               
               
               Conread position:641-899
               
               
               Cow position:chr6:12622890-12623140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:641-899
               
               
               Cow position:chr6:42267278-42267536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):235, 21

               
               
               Conread position:641-899
               
               
               Cow position:chr6:59507765-59508016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):235, 57

               
               
               Conread position:641-900
               
               
               Cow position:chr6:2089830-2090078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:641-900
               
               
               Cow position:chr6:16737434-16737691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 89

               
               
               Conread position:641-900
               
               
               Cow position:chr6:20451519-20451777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 115

               
               
               Conread position:641-900
               
               
               Cow position:chr6:25218341-25218599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:641-900
               
               
               Cow position:chr6:42481442-42481701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:641-900
               
               
               Cow position:chr6:49411265-49411009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:641-900
               
               
               Cow position:chr6:51674328-51674580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:641-900
               
               
               Cow position:chr6:60456238-60456501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 146

               
               
               Conread position:642-850
               
               
               Cow position:chr6:39091963-39092170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):199, 0

               
               
               Conread position:642-852
               
               
               Cow position:chr6:64253233-64253441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:642-854
               
               
               Cow position:chr6:39978801-39979011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:642-858
               
               
               Cow position:chr6:44869739-44869525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:642-868
               
               
               Cow position:chr6:15471252-15471026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):69, 180

               
               
               Conread position:642-872
               
               
               Cow position:chr6:14148139-14148375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 186

               
               
               Conread position:642-874
               
               
               Cow position:chr6:10106608-10106376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:642-874
               
               
               Cow position:chr6:10425831-10426065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:642-874
               
               
               Cow position:chr6:10570344-10570114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:642-874
               
               
               Cow position:chr6:56858821-56859039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:642-876
               
               
               Cow position:chr6:51879286-51879520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):125, 88

               
               
               Conread position:642-878
               
               
               Cow position:chr6:35703970-35703740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):38, 184

               
               
               Conread position:642-888
               
               
               Cow position:chr6:9469089-9469319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:642-888
               
               
               Cow position:chr6:48327770-48328013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:642-891
               
               
               Cow position:chr6:29084828-29084588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):230, 67

               
               
               Conread position:642-899
               
               
               Cow position:chr6:66550120-66550376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 178

               
               
               Conread position:642-900
               
               
               Cow position:chr6:1468373-1468118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):209, 78

               
               
               Conread position:642-900
               
               
               Cow position:chr6:12099982-12100258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:642-900
               
               
               Cow position:chr6:23695416-23695668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:642-900
               
               
               Cow position:chr6:42518381-42518640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:642-900
               
               
               Cow position:chr6:56842585-56842830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:643-834
               
               
               Cow position:chr6:42945229-42945415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:643-837
               
               
               Cow position:chr6:53672905-53673098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):185, 135

               
               
               Conread position:643-861
               
               
               Cow position:chr6:11160622-11160400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:643-873
               
               
               Cow position:chr6:50973739-50973511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:643-874
               
               
               Cow position:chr6:2088076-2088303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):179, 41

               
               
               Conread position:643-885
               
               
               Cow position:chr6:16596567-16596794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:643-891
               
               
               Cow position:chr6:62486934-62486691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:643-892
               
               
               Cow position:chr6:1734099-1733854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):240, 15

               
               
               Conread position:643-892
               
               
               Cow position:chr6:34236230-34235996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):242, 19

               
               
               Conread position:643-898
               
               
               Cow position:chr6:27887486-27887740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 23

               
               
               Conread position:643-899
               
               
               Cow position:chr6:14950097-14949841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:643-900
               
               
               Cow position:chr6:7104674-7104417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):7, 53

               
               
               Conread position:643-900
               
               
               Cow position:chr6:12662766-12662510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 71

               
               
               Conread position:643-900
               
               
               Cow position:chr6:25790171-25789917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 40

               
               
               Conread position:643-900
               
               
               Cow position:chr6:32121310-32121568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 122

               
               
               Conread position:644-798
               
               
               Cow position:chr6:7216349-7216501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:644-837
               
               
               Cow position:chr6:55345756-55345569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:644-900
               
               
               Cow position:chr6:49733350-49733606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):224, 17

               
               
               Conread position:644-900
               
               
               Cow position:chr6:50114262-50114516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:645-868
               
               
               Cow position:chr6:6079496-6079273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):29, 161

               
               
               Conread position:645-874
               
               
               Cow position:chr6:48473237-48473466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):166, 172

               
               
               Conread position:645-887
               
               
               Cow position:chr6:31979173-31978937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):28, 114

               
               
               Conread position:645-893
               
               
               Cow position:chr6:16410619-16410861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:645-900
               
               
               Cow position:chr6:14839600-14839356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:646-841
               
               
               Cow position:chr6:55688196-55688392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:646-871
               
               
               Cow position:chr6:9025464-9025686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):113, 89

               
               
               Conread position:646-885
               
               
               Cow position:chr6:14289949-14289719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 66

               
               
               Conread position:646-897
               
               
               Cow position:chr6:28322755-28322508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:646-899
               
               
               Cow position:chr6:16618579-16618838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):140, 36

               
               
               Conread position:647-812
               
               
               Cow position:chr6:34195380-34195545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:647-877
               
               
               Cow position:chr6:12739007-12739238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):90, 26

               
               
               Conread position:648-865
               
               
               Cow position:chr6:52900437-52900659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):57, 110

               
               
               Conread position:648-866
               
               
               Cow position:chr6:22011182-22010973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):171, 48

               
               
               Conread position:648-891
               
               
               Cow position:chr6:6721537-6721783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):68, 126

               
               
               Conread position:649-874
               
               
               Cow position:chr6:1090256-1090034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:649-900
               
               
               Cow position:chr6:726569-726322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:650-867
               
               
               Cow position:chr6:19443029-19443237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:650-885
               
               
               Cow position:chr6:10422564-10422798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):222, 146

               
               
               Conread position:651-828
               
               
               Cow position:chr6:16220615-16220438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:651-831
               
               
               Cow position:chr6:25408114-25407935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:651-874
               
               
               Cow position:chr6:45793227-45793445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:651-885
               
               
               Cow position:chr6:58880742-58880975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):190, 0

               
               
               Conread position:651-897
               
               
               Cow position:chr6:36918744-36918506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:651-898
               
               
               Cow position:chr6:26697488-26697246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 96

               
               
               Conread position:651-900
               
               
               Cow position:chr6:46465255-46465498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:651-900
               
               
               Cow position:chr6:47574356-47574599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:652-872
               
               
               Cow position:chr6:8442985-8442765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:652-892
               
               
               Cow position:chr6:25223848-25223614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:652-898
               
               
               Cow position:chr6:10236754-10236988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:652-900
               
               
               Cow position:chr6:58940798-58940552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:653-829
               
               
               Cow position:chr6:49692792-49692968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:653-872
               
               
               Cow position:chr6:33489661-33489442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:653-900
               
               
               Cow position:chr6:29239131-29239378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):96, 203

               
               
               Conread position:653-900
               
               
               Cow position:chr6:40031618-40031863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:654-883
               
               
               Cow position:chr6:6614875-6615100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:654-885
               
               
               Cow position:chr6:47025900-47026132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):109, 40

               
               
               Conread position:654-885
               
               
               Cow position:chr6:64426612-64426843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 61

               
               
               Conread position:654-900
               
               
               Cow position:chr6:16645450-16645691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:655-848
               
               
               Cow position:chr6:5276380-5276193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:655-900
               
               
               Cow position:chr6:89675-89435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:655-900
               
               
               Cow position:chr6:10695289-10695530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:655-900
               
               
               Cow position:chr6:66199219-66199460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:656-859
               
               
               Cow position:chr6:35416405-35416206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):170, 40

               
               
               Conread position:656-885
               
               
               Cow position:chr6:10487023-10487253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):78, 122

               
               
               Conread position:657-900
               
               
               Cow position:chr6:19515427-19515670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:657-900
               
               
               Cow position:chr6:55143691-55143454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):51, 89

               
               
               Conread position:659-849
               
               
               Cow position:chr6:8538515-8538702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:660-866
               
               
               Cow position:chr6:1498740-1498946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:660-898
               
               
               Cow position:chr6:53933417-53933180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 16

               
               
               Conread position:660-900
               
               
               Cow position:chr6:13488974-13489214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:660-900
               
               
               Cow position:chr6:55388317-55388557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:660-900
               
               
               Cow position:chr6:55762819-55763060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:661-822
               
               
               Cow position:chr6:64888534-64888694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:661-854
               
               
               Cow position:chr6:6061358-6061162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):53, 129

               
               
               Conread position:661-891
               
               
               Cow position:chr6:16675247-16675478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:661-898
               
               
               Cow position:chr6:34115455-34115684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:662-833
               
               
               Cow position:chr6:14826781-14826953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:662-900
               
               
               Cow position:chr6:39998896-39998661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:662-900
               
               
               Cow position:chr6:41232046-41232282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:663-872
               
               
               Cow position:chr6:40450085-40449875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:663-885
               
               
               Cow position:chr6:61162143-61162364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:663-886
               
               
               Cow position:chr6:54433582-54433365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:664-852
               
               
               Cow position:chr6:54491266-54491072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):14, 162

               
               
               Conread position:665-898
               
               
               Cow position:chr6:48872767-48872539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:666-874
               
               
               Cow position:chr6:18474471-18474263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:666-878
               
               
               Cow position:chr6:44623567-44623355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:667-802
               
               
               Cow position:chr6:19694400-19694535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:668-833
               
               
               Cow position:chr6:63032513-63032676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:669-898
               
               
               Cow position:chr6:67187135-67187365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:669-900
               
               
               Cow position:chr6:52697205-52697436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:670-788
               
               
               Cow position:chr6:119190-119308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:670-898
               
               
               Cow position:chr6:7009184-7009410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 125

               
               
               Conread position:670-900
               
               
               Cow position:chr6:31752496-31752722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:670-900
               
               
               Cow position:chr6:49579686-49579917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:671-874
               
               
               Cow position:chr6:35121813-35121610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):151, 52

               
               
               Conread position:671-891
               
               
               Cow position:chr6:58594672-58594456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):147, 50

               
               
               Conread position:671-898
               
               
               Cow position:chr6:64720738-64720965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:672-885
               
               
               Cow position:chr6:37611575-37611777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:672-885
               
               
               Cow position:chr6:39916412-39916624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:672-900
               
               
               Cow position:chr6:26412827-26413053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):174, 65

               
               
               Conread position:673-872
               
               
               Cow position:chr6:45765528-45765329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:673-885
               
               
               Cow position:chr6:46813732-46813937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 118

               
               
               Conread position:674-891
               
               
               Cow position:chr6:50685378-50685163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:674-900
               
               
               Cow position:chr6:9320874-9321100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:675-872
               
               
               Cow position:chr6:25178731-25178533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:675-876
               
               
               Cow position:chr6:23074555-23074756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 30

               
               
               Conread position:675-891
               
               
               Cow position:chr6:33852351-33852128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:676-898
               
               
               Cow position:chr6:28147702-28147924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:676-900
               
               
               Cow position:chr6:57383960-57384174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:677-842
               
               
               Cow position:chr6:39162332-39162495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:677-862
               
               
               Cow position:chr6:55593661-55593846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:679-899
               
               
               Cow position:chr6:68829892-68830112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:680-826
               
               
               Cow position:chr6:2545993-2546138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:680-900
               
               
               Cow position:chr6:12550718-12550938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:683-891
               
               
               Cow position:chr6:45065577-45065378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:683-898
               
               
               Cow position:chr6:561293-561084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:684-843
               
               
               Cow position:chr6:68377338-68377181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:684-872
               
               
               Cow position:chr6:2898366-2898554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:153
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:684-872
               
               
               Cow position:chr6:11032739-11032551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:150
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:684-872
               
               
               Cow position:chr6:20173986-20174174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:151
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:684-874
               
               
               Cow position:chr6:15046645-15046450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:684-874
               
               
               Cow position:chr6:32262534-32262351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:684-891
               
               
               Cow position:chr6:52120685-52120893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:684-891
               
               
               Cow position:chr6:55660277-55660079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:684-893
               
               
               Cow position:chr6:19570327-19570118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:684-897
               
               
               Cow position:chr6:38440417-38440630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):40, 86

               
               
               Conread position:684-898
               
               
               Cow position:chr6:19809136-19809347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:684-900
               
               
               Cow position:chr6:209322-209538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):201, 65

               
               
               Conread position:684-900
               
               
               Cow position:chr6:1279056-1278840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):134, 57

               
               
               Conread position:684-900
               
               
               Cow position:chr6:3574894-3575109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):134, 82

               
               
               Conread position:684-900
               
               
               Cow position:chr6:6068230-6068018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 26

               
               
               Conread position:684-900
               
               
               Cow position:chr6:6596033-6596259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:684-900
               
               
               Cow position:chr6:43394138-43394353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):192, 102

               
               
               Conread position:684-900
               
               
               Cow position:chr6:67403764-67403548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:685-871
               
               
               Cow position:chr6:28503792-28503978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:685-885
               
               
               Cow position:chr6:38900301-38900102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:685-897
               
               
               Cow position:chr6:47339908-47339695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:685-900
               
               
               Cow position:chr6:5302940-5302729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):133, 11

               
               
               Conread position:685-900
               
               
               Cow position:chr6:8636734-8636945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:685-900
               
               
               Cow position:chr6:14064202-14063988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:685-900
               
               
               Cow position:chr6:42931640-42931426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):27, 80

               
               
               Conread position:686-872
               
               
               Cow position:chr6:51544472-51544286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:687-814
               
               
               Cow position:chr6:67316984-67317111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:687-865
               
               
               Cow position:chr6:24583784-24583607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:687-872
               
               
               Cow position:chr6:27152282-27152467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:687-900
               
               
               Cow position:chr6:11185031-11185244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:687-900
               
               
               Cow position:chr6:55266155-55265955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:690-898
               
               
               Cow position:chr6:27240504-27240295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:692-827
               
               
               Cow position:chr6:57857484-57857622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:692-872
               
               
               Cow position:chr6:43955164-43955344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:692-898
               
               
               Cow position:chr6:17865002-17865208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):15, 136

               
               
               Conread position:693-899
               
               
               Cow position:chr6:27477466-27477671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:694-833
               
               
               Cow position:chr6:32135223-32135363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:695-897
               
               
               Cow position:chr6:10612322-10612524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:695-900
               
               
               Cow position:chr6:42742216-42742415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):104, 127

               
               
               Conread position:695-900
               
               
               Cow position:chr6:68048716-68048921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:696-872
               
               
               Cow position:chr6:51385871-51386044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:696-885
               
               
               Cow position:chr6:18987699-18987875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:696-891
               
               
               Cow position:chr6:30315661-30315465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:696-899
               
               
               Cow position:chr6:222972-222770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:696-900
               
               
               Cow position:chr6:3719451-3719654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:696-900
               
               
               Cow position:chr6:54648058-54647855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:697-841
               
               
               Cow position:chr6:11269462-11269322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:697-900
               
               
               Cow position:chr6:2894697-2894898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:162
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):152, 139

               
               
               Conread position:697-900
               
               
               Cow position:chr6:18448046-18447843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-900
               
               
               Cow position:chr6:8194762-8194960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:698-900
               
               
               Cow position:chr6:18969224-18969011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):81, 51

               
               
               Conread position:698-900
               
               
               Cow position:chr6:33460560-33460762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:699-898
               
               
               Cow position:chr6:9207862-9207660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:699-898
               
               
               Cow position:chr6:65904922-65905115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):85, 28

               
               
               Conread position:699-899
               
               
               Cow position:chr6:15938375-15938178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:161
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:700-874
               
               
               Cow position:chr6:24757878-24757704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:142
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:700-892
               
               
               Cow position:chr6:40323587-40323774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:700-900
               
               
               Cow position:chr6:22507223-22507416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:701-865
               
               
               Cow position:chr6:52189379-52189215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:702-872
               
               
               Cow position:chr6:25207058-25207228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:141
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:702-900
               
               
               Cow position:chr6:2185880-2185682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:702-900
               
               
               Cow position:chr6:18962047-18961850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:702-900
               
               
               Cow position:chr6:25822525-25822328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:703-890
               
               
               Cow position:chr6:58075695-58075882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:704-885
               
               
               Cow position:chr6:49391636-49391458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:704-898
               
               
               Cow position:chr6:606737-606930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:705-872
               
               
               Cow position:chr6:13597544-13597377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:137
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:705-893
               
               
               Cow position:chr6:39957837-39958022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):179, 76

               
               
               Conread position:705-898
               
               
               Cow position:chr6:32287095-32287288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):168, 149

               
               
               Conread position:705-898
               
               
               Cow position:chr6:49963538-49963346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:153
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):188, 0

               
               
               Conread position:705-898
               
               
               Cow position:chr6:66304363-66304171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:157
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:705-899
               
               
               Cow position:chr6:49707123-49706929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:705-900
               
               
               Cow position:chr6:41567309-41567504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:706-872
               
               
               Cow position:chr6:18418976-18418810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:139
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:706-884
               
               
               Cow position:chr6:27852230-27852053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:708-801
               
               
               Cow position:chr6:20245525-20245618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:79
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:708-872
               
               
               Cow position:chr6:40169551-40169386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:137
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:708-900
               
               
               Cow position:chr6:12389335-12389536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:709-871
               
               
               Cow position:chr6:7824092-7824253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:711-798
               
               
               Cow position:chr6:14415889-14415976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:78
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:711-828
               
               
               Cow position:chr6:21003868-21003986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:711-874
               
               
               Cow position:chr6:12629500-12629661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:711-885
               
               
               Cow position:chr6:7835511-7835685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):48, 54

               
               
               Conread position:711-892
               
               
               Cow position:chr6:59620126-59620302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:711-899
               
               
               Cow position:chr6:55842691-55842505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:711-900
               
               
               Cow position:chr6:55040909-55041098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:713-900
               
               
               Cow position:chr6:28172700-28172890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:714-866
               
               
               Cow position:chr6:60419063-60419214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:714-874
               
               
               Cow position:chr6:3052621-3052461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:714-874
               
               
               Cow position:chr6:5122871-5122713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:714-883
               
               
               Cow position:chr6:61268608-61268777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:139
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:714-885
               
               
               Cow position:chr6:61443626-61443455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:714-891
               
               
               Cow position:chr6:21541558-21541735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:714-898
               
               
               Cow position:chr6:42106558-42106377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:155
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):179, 19

               
               
               Conread position:714-899
               
               
               Cow position:chr6:24557077-24557266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:714-900
               
               
               Cow position:chr6:1891375-1891191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):156, 115

               
               
               Conread position:714-900
               
               
               Cow position:chr6:17414963-17414783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:153
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:715-874
               
               
               Cow position:chr6:3113429-3113270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):119, 143

               
               
               Conread position:715-886
               
               
               Cow position:chr6:31953194-31953025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):142, 5

               
               
               Conread position:716-891
               
               
               Cow position:chr6:41556959-41557139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 54

               
               
               Conread position:717-836
               
               
               Cow position:chr6:45952546-45952427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):101, 106

               
               
               Conread position:717-857
               
               
               Cow position:chr6:46667230-46667089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:717-865
               
               
               Cow position:chr6:41707099-41707247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:717-872
               
               
               Cow position:chr6:37736557-37736712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:131
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:717-898
               
               
               Cow position:chr6:28180476-28180296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):170, 117

               
               
               Conread position:717-900
               
               
               Cow position:chr6:16699749-16699941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 89

               
               
               Conread position:717-900
               
               
               Cow position:chr6:21857373-21857556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:717-900
               
               
               Cow position:chr6:39088259-39088442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:717-900
               
               
               Cow position:chr6:43999527-43999339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:717-900
               
               
               Cow position:chr6:60516216-60516398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):11, 166

               
               
               Conread position:718-837
               
               
               Cow position:chr6:30159053-30159172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):37, 70

               
               
               Conread position:718-900
               
               
               Cow position:chr6:6038619-6038434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):158, 22

               
               
               Conread position:719-885
               
               
               Cow position:chr6:13717303-13717467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:720-872
               
               
               Cow position:chr6:13531304-13531456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:131
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:720-872
               
               
               Cow position:chr6:45751573-45751725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:720-878
               
               
               Cow position:chr6:23113221-23113379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):88, 94

               
               
               Conread position:720-885
               
               
               Cow position:chr6:14696881-14696716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:720-891
               
               
               Cow position:chr6:6190917-6191087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:720-891
               
               
               Cow position:chr6:29833600-29833429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:720-899
               
               
               Cow position:chr6:28791318-28791503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:720-900
               
               
               Cow position:chr6:643103-642923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:721-900
               
               
               Cow position:chr6:21396578-21396398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:145
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:721-900
               
               
               Cow position:chr6:33509077-33509251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:722-872
               
               
               Cow position:chr6:24713732-24713582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:723-829
               
               
               Cow position:chr6:34405342-34405236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:723-872
               
               
               Cow position:chr6:34386773-34386922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:724-878
               
               
               Cow position:chr6:52240046-52239893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:726-855
               
               
               Cow position:chr6:20419965-20419836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:726-872
               
               
               Cow position:chr6:41470563-41470709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:726-874
               
               
               Cow position:chr6:22663218-22663070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:726-897
               
               
               Cow position:chr6:59277706-59277534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:727-900
               
               
               Cow position:chr6:56080270-56080097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:728-872
               
               
               Cow position:chr6:18503166-18503022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:729-883
               
               
               Cow position:chr6:23532098-23532250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):98, 18

               
               
               Conread position:729-897
               
               
               Cow position:chr6:44375389-44375556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:729-899
               
               
               Cow position:chr6:16103748-16103579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):95, 22

               
               
               Conread position:730-887
               
               
               Cow position:chr6:4824462-4824617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:730-899
               
               
               Cow position:chr6:51296700-51296531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:731-844
               
               
               Cow position:chr6:31738751-31738865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:731-893
               
               
               Cow position:chr6:60891149-60890987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):7, 149

               
               
               Conread position:731-900
               
               
               Cow position:chr6:52478942-52478772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:142
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):91, 146

               
               
               Conread position:732-900
               
               
               Cow position:chr6:66873833-66873998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:733-872
               
               
               Cow position:chr6:14198300-14198438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:735-840
               
               
               Cow position:chr6:20379897-20380002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:735-872
               
               
               Cow position:chr6:16518374-16518232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:735-886
               
               
               Cow position:chr6:60781953-60781802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):145, 58

               
               
               Conread position:735-896
               
               
               Cow position:chr6:16251696-16251856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:735-900
               
               
               Cow position:chr6:20410682-20410524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:735-900
               
               
               Cow position:chr6:33865587-33865420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):96, 87

               
               
               Conread position:735-900
               
               
               Cow position:chr6:38896367-38896202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):147, 156

               
               
               Conread position:736-873
               
               
               Cow position:chr6:42727013-42726876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:739-874
               
               
               Cow position:chr6:41677620-41677751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:740-884
               
               
               Cow position:chr6:10706398-10706256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:742-874
               
               
               Cow position:chr6:61605718-61605850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:742-900
               
               
               Cow position:chr6:15310351-15310193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:743-883
               
               
               Cow position:chr6:18142644-18142783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:743-900
               
               
               Cow position:chr6:5958498-5958345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:744-841
               
               
               Cow position:chr6:37597405-37597502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 70

               
               
               Conread position:744-872
               
               
               Cow position:chr6:59077048-59076920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:744-897
               
               
               Cow position:chr6:58370081-58370234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:744-900
               
               
               Cow position:chr6:19819108-19819264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:745-893
               
               
               Cow position:chr6:1784250-1784102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:746-885
               
               
               Cow position:chr6:65711343-65711482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:746-900
               
               
               Cow position:chr6:28558953-28559107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):72, 86

               
               
               Conread position:747-883
               
               
               Cow position:chr6:36471050-36470914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):78, 55

               
               
               Conread position:747-900
               
               
               Cow position:chr6:5851907-5851754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 109

               
               
               Conread position:747-900
               
               
               Cow position:chr6:45591812-45591965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:747-900
               
               
               Cow position:chr6:61136683-61136838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:747-900
               
               
               Cow position:chr6:62015163-62015316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:747-900
               
               
               Cow position:chr6:67544775-67544622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:748-876
               
               
               Cow position:chr6:45155641-45155769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:748-891
               
               
               Cow position:chr6:5866875-5866732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:748-898
               
               
               Cow position:chr6:36928167-36928321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:748-900
               
               
               Cow position:chr6:20268197-20268347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:749-900
               
               
               Cow position:chr6:20689803-20689652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:750-877
               
               
               Cow position:chr6:67969442-67969315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:750-898
               
               
               Cow position:chr6:47640980-47640834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:750-898
               
               
               Cow position:chr6:53178157-53178307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:752-892
               
               
               Cow position:chr6:46246573-46246433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:752-900
               
               
               Cow position:chr6:64431469-64431617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:756-872
               
               
               Cow position:chr6:18649237-18649122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:756-872
               
               
               Cow position:chr6:50755549-50755665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:756-885
               
               
               Cow position:chr6:44098614-44098743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:756-898
               
               
               Cow position:chr6:3979136-3978993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:756-900
               
               
               Cow position:chr6:58172612-58172756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):101, 23

               
               
               Conread position:758-898
               
               
               Cow position:chr6:51834931-51835071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):10, 34

               
               
               Conread position:758-900
               
               
               Cow position:chr6:36892390-36892532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:759-872
               
               
               Cow position:chr6:55361635-55361748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:759-872
               
               
               Cow position:chr6:55720847-55720960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:759-891
               
               
               Cow position:chr6:12648054-12648188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:759-898
               
               
               Cow position:chr6:32867676-32867538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:759-900
               
               
               Cow position:chr6:53918199-53918058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:759-900
               
               
               Cow position:chr6:65863003-65863144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:760-859
               
               
               Cow position:chr6:48946840-48946741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:82
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:760-878
               
               
               Cow position:chr6:5610127-5610009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:761-895
               
               
               Cow position:chr6:13688280-13688152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:761-898
               
               
               Cow position:chr6:22216050-22215912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:761-900
               
               
               Cow position:chr6:61575124-61575267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):117, 60

               
               
               Conread position:762-872
               
               
               Cow position:chr6:40511557-40511447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:762-874
               
               
               Cow position:chr6:1770661-1770550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:762-897
               
               
               Cow position:chr6:44216911-44217046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:762-900
               
               
               Cow position:chr6:9226200-9226338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:763-899
               
               
               Cow position:chr6:51467996-51468134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:764-899
               
               
               Cow position:chr6:11907643-11907778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:765-891
               
               
               Cow position:chr6:23987204-23987078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:766-885
               
               
               Cow position:chr6:56376854-56376734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:766-900
               
               
               Cow position:chr6:7253902-7253768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):118, 104

               
               
               Conread position:768-892
               
               
               Cow position:chr6:58439530-58439655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:768-900
               
               
               Cow position:chr6:36201392-36201524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:769-900
               
               
               Cow position:chr6:23248569-23248437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:770-897
               
               
               Cow position:chr6:32916377-32916252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:770-900
               
               
               Cow position:chr6:13366839-13366968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:771-900
               
               
               Cow position:chr6:143817-143689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:772-897
               
               
               Cow position:chr6:66453043-66453168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:772-898
               
               
               Cow position:chr6:10605226-10605352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:772-900
               
               
               Cow position:chr6:18955491-18955363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-891
               
               
               Cow position:chr6:36651967-36652085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-899
               
               
               Cow position:chr6:24030918-24031044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-900
               
               
               Cow position:chr6:7131304-7131177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:777-900
               
               
               Cow position:chr6:48169492-48169615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-899
               
               
               Cow position:chr6:5096000-5095881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-900
               
               
               Cow position:chr6:61842511-61842629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:789-899
               
               
               Cow position:chr6:8599347-8599457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0
Show alignments to all cow chromosomes.
Conread position:	151-900
Cow position:	chr6:22628657-22627908 (view UCSC Genome Browser custom track)
Alignm length:	750
Alignm identity:	193
Alignm E-value:	0
Alignm gaps (pig, cow):	0, 0
Conread position:	452-900
Cow position:	chr6:10681964-10682413 (view UCSC Genome Browser custom track)
Alignm length:	450
Alignm identity:	97
Alignm E-value:	3e-24
Alignm gaps (pig, cow):	430, 0
Conread position:	604-874
Cow position:	chr6:50527037-50527297 (view UCSC Genome Browser custom track)
Alignm length:	272
Alignm identity:	200
Alignm E-value:	7.00649e-43
Alignm gaps (pig, cow):	209, 16
Conread position:	610-874
Cow position:	chr6:9368704-9368426 (view UCSC Genome Browser custom track)
Alignm length:	280
Alignm identity:	188
Alignm E-value:	3e-24
Alignm gaps (pig, cow):	70, 27
Conread position:	611-871
Cow position:	chr6:6166785-6167038 (view UCSC Genome Browser custom track)
Alignm length:	263
Alignm identity:	187
Alignm E-value:	8e-34
Alignm gaps (pig, cow):	10, 32
Conread position:	611-900
Cow position:	chr6:39331003-39330712 (view UCSC Genome Browser custom track)
Alignm length:	293
Alignm identity:	222
Alignm E-value:	0
Alignm gaps (pig, cow):	29, 9
Conread position:	612-831
Cow position:	chr6:14758994-14758779 (view UCSC Genome Browser custom track)
Alignm length:	221
Alignm identity:	158
Alignm E-value:	5e-30
Alignm gaps (pig, cow):	169, 8
Conread position:	612-874
Cow position:	chr6:15991411-15991156 (view UCSC Genome Browser custom track)
Alignm length:	264
Alignm identity:	173
Alignm E-value:	6e-22
Alignm gaps (pig, cow):	9, 31
Conread position:	613-842
Cow position:	chr6:9036359-9036128 (view UCSC Genome Browser custom track)
Alignm length:	233
Alignm identity:	162
Alignm E-value:	2e-30
Alignm gaps (pig, cow):	27, 197
Conread position:	620-808
Cow position:	chr6:28977959-28977770 (view UCSC Genome Browser custom track)
Alignm length:	191
Alignm identity:	157
Alignm E-value:	0
Alignm gaps (pig, cow):	130, 21
Conread position:	620-856
Cow position:	chr6:37643957-37644192 (view UCSC Genome Browser custom track)
Alignm length:	237
Alignm identity:	173
Alignm E-value:	1.99993e-41
Alignm gaps (pig, cow):	231, 0
Conread position:	620-900
Cow position:	chr6:1637419-1637137 (view UCSC Genome Browser custom track)
Alignm length:	283
Alignm identity:	214
Alignm E-value:	0
Alignm gaps (pig, cow):	20, 0
Conread position:	625-900
Cow position:	chr6:2012425-2012692 (view UCSC Genome Browser custom track)
Alignm length:	276
Alignm identity:	226
Alignm E-value:	0
Alignm gaps (pig, cow):	15, 0
Conread position:	626-856
Cow position:	chr6:24109091-24109321 (view UCSC Genome Browser custom track)
Alignm length:	231
Alignm identity:	164
Alignm E-value:	1e-36
Alignm gaps (pig, cow):	0, 0
Conread position:	626-873
Cow position:	chr6:16276275-16276524 (view UCSC Genome Browser custom track)
Alignm length:	251
Alignm identity:	162
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	134, 11
Conread position:	628-843
Cow position:	chr6:14707338-14707126 (view UCSC Genome Browser custom track)
Alignm length:	219
Alignm identity:	152
Alignm E-value:	9e-25
Alignm gaps (pig, cow):	41, 9
Conread position:	628-854
Cow position:	chr6:27342131-27342355 (view UCSC Genome Browser custom track)
Alignm length:	230
Alignm identity:	161
Alignm E-value:	1e-27
Alignm gaps (pig, cow):	8, 79
Conread position:	628-874
Cow position:	chr6:7175721-7175479 (view UCSC Genome Browser custom track)
Alignm length:	249
Alignm identity:	185
Alignm E-value:	2e-40
Alignm gaps (pig, cow):	115, 9
Conread position:	628-875
Cow position:	chr6:36852030-36852277 (view UCSC Genome Browser custom track)
Alignm length:	251
Alignm identity:	173
Alignm E-value:	6e-31
Alignm gaps (pig, cow):	90, 7
Conread position:	628-885
Cow position:	chr6:50801018-50800762 (view UCSC Genome Browser custom track)
Alignm length:	258
Alignm identity:	198
Alignm E-value:	0
Alignm gaps (pig, cow):	9, 0