Cow genome map

Conread name: Ss1.1-Spl1-SPL01A090064.5

Conread position: 4-143
Cow position: chr1:82880838-82880978 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 115, 49

Conread position: 4-237
Cow position: chr1:82419514-82419743 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 18

Conread position: 9-165
Cow position: chr1:58050040-58050191 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 112, 11

Conread position: 10-249
Cow position: chr1:7435028-7434788 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 94, 21

Conread position: 13-175
Cow position: chr1:83789935-83790095 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 106, 21

Conread position: 13-188
Cow position: chr1:91840784-91840957 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 105, 18

Conread position: 15-165
Cow position: chr1:30087300-30087447 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 104, 19

Conread position: 15-238
Cow position: chr1:69239956-69240171 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 103, 22

Conread position: 16-168
Cow position: chr1:78060246-78060396 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 105, 18

Conread position: 16-187
Cow position: chr1:89093768-89093600 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 103, 18

Conread position: 16-219
Cow position: chr1:1778059-1778263 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 101, 82

Conread position: 16-219
Cow position: chr1:60452332-60452533 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 103, 18

Conread position: 16-232
Cow position: chr1:91977151-91977370 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 101, 15

Conread position: 16-568
Cow position: chr1:69346240-69345686 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 147
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 15, 56

Conread position: 20-163
Cow position: chr1:62197388-62197532 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 122
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 101, 33

Conread position: 22-153
Cow position: chr1:23713901-23714034 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 67, 14

Conread position: 22-188
Cow position: chr1:24229925-24229759 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 97, 13

Conread position: 28-231
Cow position: chr1:31114194-31114396 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 93, 22

Conread position: 32-152
Cow position: chr1:90862253-90862131 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 87, 18

Conread position: 32-165
Cow position: chr1:31342665-31342801 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 85, 23

Conread position: 32-172
Cow position: chr1:101657119-101657258 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 89, 69

Conread position: 32-176
Cow position: chr1:22590731-22590873 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 86, 14

Conread position: 32-183
Cow position: chr1:66990046-66990197 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 87, 18

Conread position: 32-189
Cow position: chr1:22605554-22605709 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 89, 37

Conread position: 32-208
Cow position: chr1:13797913-13797736 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 89, 22

Conread position: 32-214
Cow position: chr1:16984268-16984085 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 87, 18

Conread position: 32-214
Cow position: chr1:46241559-46241742 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 87, 18

Conread position: 32-215
Cow position: chr1:46283446-46283629 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 89, 18

Conread position: 32-231
Cow position: chr1:4269458-4269261 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 87, 18

Conread position: 32-231
Cow position: chr1:82420371-82420569 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 89, 23

Conread position: 32-231
Cow position: chr1:93579830-93580022 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 32-238
Cow position: chr1:22419069-22418864 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 157
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 24, 7

Conread position: 32-238
Cow position: chr1:75266875-75266665 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 29, 0

Conread position: 32-247
Cow position: chr1:39066953-39067162 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 18, 0

Conread position: 32-247
Cow position: chr1:93441048-93440826 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 54, 158

Conread position: 32-249
Cow position: chr1:22607627-22607846 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 82, 16

Conread position: 32-249
Cow position: chr1:82422792-82423008 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 171
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 74, 18

Conread position: 33-163
Cow position: chr1:72734206-72734076 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 81, 5

Conread position: 33-209
Cow position: chr1:6971791-6971967 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 86, 81

Conread position: 36-177
Cow position: chr1:28469916-28469774 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 118
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 81, 22

Conread position: 36-180
Cow position: chr1:70256737-70256590 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 83, 14

Conread position: 36-232
Cow position: chr1:9147699-9147502 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 152
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 83, 14

Conread position: 36-237
Cow position: chr1:42184890-42184692 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 82, 14

Conread position: 36-249
Cow position: chr1:91819413-91819627 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 83, 14

Conread position: 37-201
Cow position: chr1:10768652-10768487 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 84, 13

Conread position: 39-203
Cow position: chr1:22442487-22442656 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 17, 151

Conread position: 39-231
Cow position: chr1:8319237-8319047 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 80, 11

Conread position: 40-232
Cow position: chr1:67905448-67905637 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 148
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 79, 14

Conread position: 44-232
Cow position: chr1:60785961-60786151 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 14, 89

Conread position: 44-236
Cow position: chr1:30068928-30068733 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 78, 0

Conread position: 46-231
Cow position: chr1:47636242-47636055 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 132
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 10, 142

Conread position: 46-232
Cow position: chr1:81469036-81469220 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 147
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 10, 18

Conread position: 46-273
Cow position: chr1:96313227-96312999 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 144

Conread position: 47-226
Cow position: chr1:22659878-22659695 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 10, 86

Conread position: 50-213
Cow position: chr1:22607000-22607174 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 71, 158

Conread position: 50-249
Cow position: chr1:96142548-96142351 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 100, 51

Conread position: 55-188
Cow position: chr1:44128877-44129013 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 64, 0

Conread position: 117-228
Cow position: chr1:6059353-6059244 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 5, 100

Show alignments to all cow chromosomes.