Cow genome map

Conread name: Ss1.1-Spl1-SPL01A090064.5

Conread position: 3-238
Cow position: chr11:41226034-41226268 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 8, 33

Conread position: 4-237
Cow position: chr11:11396723-11396497 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 110, 27

Conread position: 10-249
Cow position: chr11:65753012-65753255 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 184
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 41, 24

Conread position: 13-232
Cow position: chr11:64035292-64035076 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 108, 18

Conread position: 14-240
Cow position: chr11:18139137-18139370 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 104, 17

Conread position: 15-188
Cow position: chr11:8557381-8557211 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 104, 19

Conread position: 16-188
Cow position: chr11:30474136-30473966 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 103, 18

Conread position: 16-231
Cow position: chr11:59969725-59969513 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 72, 18

Conread position: 16-238
Cow position: chr11:72344978-72345193 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 103, 20

Conread position: 17-248
Cow position: chr11:32770613-32770390 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 102, 14

Conread position: 19-180
Cow position: chr11:59989276-59989445 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 19-230
Cow position: chr11:48074250-48074040 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 92, 15

Conread position: 20-175
Cow position: chr11:30220454-30220300 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 99, 15

Conread position: 21-200
Cow position: chr11:66494648-66494471 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 55

Conread position: 32-235
Cow position: chr11:14191388-14191595 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 49, 18

Conread position: 32-237
Cow position: chr11:12336321-12336525 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 161
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 87, 18

Conread position: 32-238
Cow position: chr11:37318548-37318341 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 85, 18

Conread position: 32-249
Cow position: chr11:70694306-70694082 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 27

Conread position: 32-278
Cow position: chr11:6752969-6752727 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 171
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 87, 18

Conread position: 33-180
Cow position: chr11:75202389-75202536 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 88, 17

Conread position: 33-184
Cow position: chr11:33442508-33442360 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 88, 17

Conread position: 33-231
Cow position: chr11:45821091-45820890 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 86, 17

Conread position: 36-201
Cow position: chr11:83551715-83551549 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 135
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 85, 151

Conread position: 36-228
Cow position: chr11:12320634-12320830 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 151
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 12, 154

Conread position: 36-231
Cow position: chr11:32075750-32075557 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 138
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 83, 14

Conread position: 36-246
Cow position: chr11:65479545-65479753 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 80, 12

Conread position: 42-249
Cow position: chr11:35745706-35745499 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 13, 47

Conread position: 43-188
Cow position: chr11:25355833-25355982 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 76, 0

Conread position: 44-208
Cow position: chr11:40582518-40582679 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 12, 26

Conread position: 44-246
Cow position: chr11:37328350-37328148 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 77, 19

Conread position: 46-188
Cow position: chr11:2894863-2895009 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 46-210
Cow position: chr11:50040660-50040493 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 9, 135

Conread position: 46-229
Cow position: chr11:58354915-58354735 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 12, 69

Conread position: 46-231
Cow position: chr11:40512149-40512337 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 10, 109

Conread position: 46-231
Cow position: chr11:71161716-71161900 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 148

Conread position: 47-179
Cow position: chr11:47885048-47884912 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 47-274
Cow position: chr11:55183513-55183741 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 74, 142

Conread position: 50-194
Cow position: chr11:83086670-83086522 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 50-212
Cow position: chr11:63667164-63667001 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 71, 127

Conread position: 50-231
Cow position: chr11:3612552-3612381 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 50-231
Cow position: chr11:18179939-18180121 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 6, 138

Conread position: 55-237
Cow position: chr11:83266198-83266381 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 64, 125

Conread position: 56-236
Cow position: chr11:15636084-15636262 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 145, 0

Conread position: 58-217
Cow position: chr11:35616812-35616977 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 132

Conread position: 62-211
Cow position: chr11:19228342-19228191 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 26, 127

Conread position: 68-238
Cow position: chr11:36397318-36397148 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 50, 121

Conread position: 84-237
Cow position: chr11:7066364-7066520 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 102-249
Cow position: chr11:48059228-48059376 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 17, 69

Show alignments to all cow chromosomes.