Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01A090064.5 |
| Conread position: | 11-249 |
| Cow position: | chr13:60240178-60239937 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 107, 39 |
| Conread position: | 13-183 |
| Cow position: | chr13:42101694-42101864 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 106, 21 |
| Conread position: | 14-194 |
| Cow position: | chr13:43784113-43783932 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 104, 36 |
| Conread position: | 15-189 |
| Cow position: | chr13:50813637-50813464 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 104, 20 |
| Conread position: | 15-236 |
| Cow position: | chr13:52328734-52328951 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 106, 19 |
| Conread position: | 16-232 |
| Cow position: | chr13:30335453-30335665 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 103, 20 |
| Conread position: | 16-237 |
| Cow position: | chr13:52184265-52184045 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 16-238 |
| Cow position: | chr13:54409365-54409145 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 103, 15 |
| Conread position: | 32-168 |
| Cow position: | chr13:50784998-50784861 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-179 |
| Cow position: | chr13:5244815-5244963 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 86, 18 |
| Conread position: | 32-183 |
| Cow position: | chr13:15310595-15310446 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 32-183 |
| Cow position: | chr13:36820463-36820309 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-236 |
| Cow position: | chr13:10003182-10002980 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 72, 35 |
| Conread position: | 32-236 |
| Cow position: | chr13:50787144-50787346 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 88, 18 |
| Conread position: | 32-238 |
| Cow position: | chr13:22109318-22109117 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 87, 22 |
| Conread position: | 32-238 |
| Cow position: | chr13:22170019-22169818 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 87, 22 |
| Conread position: | 32-238 |
| Cow position: | chr13:49624999-49625199 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 89, 42 |
| Conread position: | 32-249 |
| Cow position: | chr13:17121368-17121589 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-249 |
| Cow position: | chr13:26005266-26005051 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 36-181 |
| Cow position: | chr13:26324738-26324886 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 83, 14 |
| Conread position: | 36-184 |
| Cow position: | chr13:31488901-31488751 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 83, 14 |
| Conread position: | 36-249 |
| Cow position: | chr13:52852117-52852331 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 85, 13 |
| Conread position: | 38-152 |
| Cow position: | chr13:8427506-8427624 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 39-174 |
| Cow position: | chr13:34189798-34189935 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 39-189 |
| Cow position: | chr13:54718706-54718554 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 41-273 |
| Cow position: | chr13:15348050-15347813 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 77, 47 |
| Conread position: | 46-184 |
| Cow position: | chr13:14863592-14863734 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 46-215 |
| Cow position: | chr13:722722-722893 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 165 |
| Conread position: | 46-231 |
| Cow position: | chr13:49454416-49454230 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 142 |
| Conread position: | 46-231 |
| Cow position: | chr13:54346037-54346221 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 73, 131 |
| Conread position: | 46-232 |
| Cow position: | chr13:30324853-30325042 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 9, 144 |
| Conread position: | 48-219 |
| Cow position: | chr13:19329279-19329105 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 71, 89 |
| Conread position: | 50-230 |
| Cow position: | chr13:52693376-52693558 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 71, 139 |
| Conread position: | 53-189 |
| Cow position: | chr13:27710937-27710798 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 54-233 |
| Cow position: | chr13:47665549-47665729 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 64, 80 |
| Conread position: | 62-229 |
| Cow position: | chr13:34872494-34872658 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 59, 10 |
Show alignments to all cow chromosomes.