Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01A090064.5 |
| Conread position: | 3-247 |
| Cow position: | chr15:39568940-39568683 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 190 |
| Conread position: | 5-237 |
| Cow position: | chr15:30945269-30945498 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 7-238 |
| Cow position: | chr15:34436321-34436556 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 87, 43 |
| Conread position: | 9-238 |
| Cow position: | chr15:29273866-29274092 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 108, 12 |
| Conread position: | 10-238 |
| Cow position: | chr15:23339282-23339502 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 83, 21 |
| Conread position: | 13-200 |
| Cow position: | chr15:14219079-14219263 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 105, 18 |
| Conread position: | 13-213 |
| Cow position: | chr15:26133752-26133557 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 106, 21 |
| Conread position: | 15-250 |
| Cow position: | chr15:6653845-6654074 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 106, 16 |
| Conread position: | 16-162 |
| Cow position: | chr15:42257219-42257076 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 18 |
| Conread position: | 16-219 |
| Cow position: | chr15:14494436-14494644 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 105, 18 |
| Conread position: | 16-240 |
| Cow position: | chr15:52822774-52822997 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 182 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 97, 15 |
| Conread position: | 16-274 |
| Cow position: | chr15:42288813-42289068 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 105, 15 |
| Conread position: | 22-180 |
| Cow position: | chr15:233181-233345 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 32-170 |
| Cow position: | chr15:16444692-16444552 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-177 |
| Cow position: | chr15:22486385-22486238 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 75 |
| Conread position: | 32-188 |
| Cow position: | chr15:9182912-9183062 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 145, 18 |
| Conread position: | 32-228 |
| Cow position: | chr15:9369979-9369786 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-236 |
| Cow position: | chr15:43655022-43655223 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 33-249 |
| Cow position: | chr15:22093161-22092949 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 85, 17 |
| Conread position: | 33-249 |
| Cow position: | chr15:30559883-30559666 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 86, 17 |
| Conread position: | 36-231 |
| Cow position: | chr15:29596579-29596774 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 85, 14 |
| Conread position: | 39-211 |
| Cow position: | chr15:14088749-14088577 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 145 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 46-188 |
| Cow position: | chr15:26304545-26304689 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 10, 134 |
| Conread position: | 46-201 |
| Cow position: | chr15:22931104-22931262 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 46-238 |
| Cow position: | chr15:44902551-44902355 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 10, 145 |
| Conread position: | 50-230 |
| Cow position: | chr15:5000841-5001023 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 67, 136 |
| Conread position: | 50-305 |
| Cow position: | chr15:11730238-11730500 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 68, 122 |
| Conread position: | 54-231 |
| Cow position: | chr15:18638928-18638748 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 67, 118 |
| Conread position: | 60-249 |
| Cow position: | chr15:26624704-26624898 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 53, 100 |
| Conread position: | 69-246 |
| Cow position: | chr15:46340557-46340377 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 52, 98 |
Show alignments to all cow chromosomes.